BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70250.1
Length=2410
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476148 jgi|Araly1|476148|fgenesh2_kg.2__1278__AT1G70250.1 2098 0.0
Ahg493041 jgi|Araly1|493041|fgenesh2_kg.7__2474__AT4G18250.1 922 0.0
Ahg346167 jgi|Araly1|346167|fgenesh1_pg.C_scaffold_4002509 383 4e-105
> Ahg476148 jgi|Araly1|476148|fgenesh2_kg.2__1278__AT1G70250.1
Length=2416
Score = 2098 bits (1136), Expect = 0.0
Identities = 1465/1618 (91%), Gaps = 45/1618 (3%)
Strand=Plus/Plus
Query 435 CAATGTCAAGGAGCTTTACGATAGAAAACAAATGCCAATACACCATATGGCCTGCAACCT 494
|||||||||||||||||| |||||||||||||||| |||||| ||| |||||||||||||
Sbjct 498 CAATGTCAAGGAGCTTTAAGATAGAAAACAAATGCGAATACATCATCTGGCCTGCAACCT 557
Query 495 ACGGCTATAGGAGATCACTAGAAACAACCGGTTTTGTTCTTGAGAAAGGAGAGACGCGTA 554
||||||| | ||||||||| |||||||||||||||||||| ||||||||||||||||| |
Sbjct 558 ACGGCTACAAGAGATCACTGGAAACAACCGGTTTTGTTCTCGAGAAAGGAGAGACGCGGA 617
Query 555 CCATCAAAGCGCCGTCATCATGGATAGGTCGTTTCTGGGGTAGGAC-ACTCTGCTCCACC 613
||||||||||||| ||||||||| ||||||||| ||||||||||| | ||||||||||
Sbjct 618 CCATCAAAGCGCCACCATCATGGACAGGTCGTTTTTGGGGTAGGACGA-TCTGCTCCACT 676
Query 614 AACTCAACAGGGGGTTTCTCATGTGCCACGGGAGACTGCACCTCCGGAAAAATCAAGTGC 673
||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 677 AACTCAACAGGGGCTTTCTCATGTGCCACGGGAGACTGCGCCTCCGGAAAAATCAAATGC 736
Query 674 CTCGGTATCCCCATAGATCCAACAACAGTGGTCGAGTTTAACCTCGCTTCTTACGGTGTC 733
||||||| |||||||||||||||||| |||| ||| |||||||||||||||||| | ||
Sbjct 737 CTCGGTAACCCCATAGATCCAACAACTGTGGCCGACTTTAACCTCGCTTCTTAC-G-GT- 793
Query 734 GACTATTATGTCGTCAACGTCTTCAATGGTTACAACCTCCCTTTGCTTGTGACCCCCGAG 793
||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||
Sbjct 794 GACTATTATGTCGTCAACGTCATCGATGGTTACAACCTCCCTTTGCTTGTGACCCCTGAG 853
Query 794 AACAAAAACTGCAGAAGCATTGAATGCGTTATTGACATGAACGAGACATGTCCCTCGGAG 853
| ||||||||||||||||| || ||||||| |||||||||||||||| ||||||||||||
Sbjct 854 ATCAAAAACTGCAGAAGCACTGGATGCGTTGTTGACATGAACGAGACGTGTCCCTCGGAG 913
Query 854 CTAATGGTGAACAGTAGTGGCCTTGGATCGCACCATCCAATAGCCTGCATGACCACTTGT 913
|||||||||||||| | | | | |||||||||||||||||||||||||| |||
Sbjct 914 CTAATGGTGAACAG-A-T---C-----T--CACCATCCAATAGCCTGCATGACCACCTGT 961
Query 914 CAGAGATACCAGTTGCCAGAGCTTTGCTGTATCGGACTCTCTTCTGGGGTGGTCGTACCA 973
||||||||||||||||| |||||||||||| ||||||||| ||||| ||||||||||||
Sbjct 962 CAGAGATACCAGTTGCCCGAGCTTTGCTGTGCCGGACTCTCCTCTGGAGTGGTCGTACCA 1021
Query 974 CCGGGAATATGCAAGCGGACGATCTACTCGCGGACATTCAATAACGTGTGCCCAAGCGCT 1033
||||||||||||||||||||||| ||||||||||| ||||| ||| |||||||||||||
Sbjct 1022 CCGGGAATATGCAAGCGGACGATTTACTCGCGGACTTTCAACCACGCGTGCCCAAGCGCT 1081
Query 1034 TATAGTTACGCCTACGACGTTGATAACAGCAGTTTCACTTGTCCAAACTTCTCCAACTTT 1093
||||| ||| ||||||| |||||||||||| ||||||||||||| ||||||||||||||
Sbjct 1082 TATAGCTACATCTACGACTTTGATAACAGCACTTTCACTTGTCCATACTTCTCCAACTTT 1141
Query 1094 GTCATCACGTTTTGTCCGTCTAGCTCAACGGTCCCAGAGGCAGGAAACATCAATAGCTCA 1153
|||||||||||||| |||||||| || || || | || ||||||||| |||||||
Sbjct 1142 GTCATCACGTTTTGCCCGTCTAG-TC-AC---AACAAAACCA-GAAACATCATTAGCTCA 1195
Query 1154 ACGGTCCC-A--G-AGG-CA-G--GAA---ACAT----C---AAAACTGGAACAGAAGCA 1195
|||||||| | | ||| | | ||| | | | |||| | || ||||||||
Sbjct 1196 ACGGTCCCAAGGGCAGGAAATGTTGAAGGTTCTTCCCCCAAGAAAATTCGAGCAGAAGCA 1255
Query 1196 AAAGGAAATATTCCATTGAGGTTAAAACTCATACTTGGAGTTTCATCAGTATTGGCTACA 1255
||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 1256 AAAGGAAATTTTCCATTGAAGTTAAAACTCATACTTGGAGTTTCATCAGTTTTGGCTACA 1315
Query 1256 ATGATCATTATTGTGATTGTGGGAAAG-GTTAGAGCAAATAATATGAGAAAGAGTGATTT 1314
|||||||||||||||||||| || ||| ||||||||||| |||| ||||||||||||||
Sbjct 1316 ATGATCATTATTGTGATTGT-GGTAAGCGTTAGAGCAAAGAATACGAGAAAGAGTGATTG 1374
Query 1315 GAATGAGAAGAACATGGAAGCAGTGGTAATGTTGAAACGATTT-AGTTATGTACAAGTCA 1373
|||||||||||||||||||||||| |||||| |||| || ||| ||||||||||||||||
Sbjct 1375 GAATGAGAAGAACATGGAAGCAGTTGTAATGATGAAGCG-TTTCAGTTATGTACAAGTCA 1433
Query 1374 AGAAGATGACAAAATCATTTGAGAATGTTCTTGGGAAAGGGGGATTTGGAACTGTCTATA 1433
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 1434 AGAAGATGACAAACTCATTTGCGAATGTTCTTGGGAAAGGGGGATTTGGAACTGTATATA 1493
Query 1434 AAGGGAAGTTACCTGATGGCAGCCGAGATGTTGCAGTGAAGATCTTGAAGGAGTCAAACG 1493
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 AAGGGAAGTTACCCGATGGCAGCCGAGATGTTGCAGTGAAGATCTTGAAGGAGTCAAACG 1553
Query 1494 AGGATGGAGAAGACTTCATCAATGAAATAGCTAGCATGAGTAGGACATCTCATGCTAATA 1553
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 GGGATGGGGAAGACTTCATCAATGAAATAGCTAGCATGAGTAGGACATCTCATGCTAATA 1613
Query 1554 TCGTTTCTCTACTTGGATTCTGTTATGAAGGGAGGAAGAAAGCTATAATTTACGAGTTGA 1613
| |||||||| ||||||||||||||||||||||| |||||||||||||| || ||||| |
Sbjct 1614 TAGTTTCTCTGCTTGGATTCTGTTATGAAGGGAGAAAGAAAGCTATAATATATGAGTTCA 1673
Query 1614 TGCCGAATGGATCCCTCGACAAGTTCATCTCCAAGAATATGTCGGCGAAGATGGAATGGA 1673
|||||||||||||||| |||||||||||||| |||| |||||||| |||||||||||||
Sbjct 1674 TGCCGAATGGATCCCTTGACAAGTTCATCTCTGAGAAGATGTCGGCAAAGATGGAATGGA 1733
Query 1674 AAACGTTATACAACATTGCGGTAGGTGTGTCTCATGGCCTAGAATACTTGCATAGCCATT 1733
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1734 AAACGTTATACAACATTGCGGTAGGTGTGTCTCATGGCCTAGAATATTTGCATAGCCATT 1793
Query 1734 GTGTATCAAGGATTGTACATTTCGATATAAAGCCACAGAACATACTCATAGATGGAGACT 1793
||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
Sbjct 1794 GTGTATCAAGGATTGTACATTTCGATATAAAGCCACAAAACATACTCATGGATGGAGATT 1853
Query 1794 TATGCCCTAAGATTTCGGATTTCGGTCTTGCTAAGCTTTGCAAAAATAATGAAAGCATCA 1853
| |||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||
Sbjct 1854 TTTGCCCTAAGATTTCGGATTTTGGTCTTGCTAAACTATGCAAAAATAATGAAAGCATCA 1913
Query 1854 TTTCAATGCTACATGCAAGAGGCACCATAGGGTACATTGCTCCAGAAGTGTTCTCCCAGA 1913
| ||||||||||||||||||||||| || ||||||||||| ||||||||||| |||||||
Sbjct 1914 TGTCAATGCTACATGCAAGAGGCACGATCGGGTACATTGCCCCAGAAGTGTTTTCCCAGA 1973
Query 1914 ATTTTGGAGGAGTTTCTCATAAGTCTGATGTGTATAGTTATGGAATGGTGGTTCTTGAGA 1973
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1974 GTTTTGGAGGAGTTTCTCATAAGTCGGATGTGTATAGTTATGGAATGGTGGTTCTTGAGA 2033
Query 1974 TGATTGGAGCAAGGAACATAGGAAGAGCTCAAAATGCTGGATCCAGTAATACTTCAAT 2031
|||||||||||||||| |||| ||| ||||||||| |||||||| ||| ||||||||
Sbjct 2034 TGATTGGAGCAAGGAATATAGAAAGGGCTCAAAATTTTGGATCCAATAACACTTCAAT 2091
Score = 497 bits (269), Expect = 1e-139
Identities = 310/329 (94%), Gaps = 5/329 (2%)
Strand=Plus/Plus
Query 2083 TTTTTTGGCAGATCAAATAACCGAAGAAGAAGATGAGAAGATAGTAAAGAAAATGGTATT 2142
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 2092 TTTTTTGGCAGATCAAATTACCGAAGAAGAAGGTGAGAAGATAGTAAAGAAAATGGTATT 2151
Query 2143 GGTGGGTCTGTGGTGTATTCAGACCAATCCATATGATCGTCCACCAATGAGCAAAGTTGT 2202
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 2152 GGTGGGTCTGTGGTGTATTCAGACCAATCCATATGATCGTCCGCCAATGAGAAAAGTTGT 2211
Query 2203 TGAAATGTTAGAGGGAAGTCTAGAGGCTCTCCAGATTCCACCTAAGCCTCTTTTATGTTT 2262
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2212 TGAAATGTTAGAGGGAAGTCTAGAGGCTCTCCAGATTCCACCTAAACCTCTTTTATGTTT 2271
Query 2263 ACCCGCAA-TAACAGCTCCAATAACAGTTGATGAAGACATTCAAGAGACTTCAAGCTTCT 2321
||||| | ||||| ||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 2272 ACCCG-AGGTAACAATTCCAATAACTGTTGATGA---CATTCAAGAGACTTAAAGCTTCT 2327
Query 2322 TGAAACCAAGTCAAGATACTTCATATTATTCCGAACAAATAGTTCAAGATATTGTAGAAG 2381
|||||||||||||||| |||||||||||||| |||||| | |||||||||||||||||||
Sbjct 2328 TGAAACCAAGTCAAGACACTTCATATTATTCTGAACAAGTTGTTCAAGATATTGTAGAAG 2387
Query 2382 AGAATCAAGATAGCTCAAGATCTTCCTAA 2410
|||||||||||||||||||||||||||||
Sbjct 2388 AGAATCAAGATAGCTCAAGATCTTCCTAA 2416
Score = 440 bits (238), Expect = 2e-122
Identities = 343/391 (88%), Gaps = 18/391 (5%)
Strand=Plus/Plus
Query 1 AGAAAGAAAAATGACAACGGCGATGATGA---T-AT-TC-GC---GGTTTTGGTTACAGT 51
|||||||| |||||||||||||||||||| | || | || |||||||||||| ||
Sbjct 1 AGAAAGAAGAATGACAACGGCGATGATGATCTTCATGGCGGCGATGGTTTTGGTTACGGT 60
Query 52 GGTGGAGGTGGAAGCACAGACTGAGTGCGTGAGCAAGATAGTTCCCTGCTTCAGGTTCTT 111
| || |||||||||||||| |||||| |||||||||||||| ||||||||||||||| |
Sbjct 61 GCCGGCGGTGGAAGCACAGAGTGAGTGTGTGAGCAAGATAGTCCCCTGCTTCAGGTTCAT 120
Query 112 GAACACGACAACAAAGCCGTCGACGGATTGTTGCAACTCGATCAAGGAAGCGATGGAGAA 171
| |||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 121 GGACACGAAAACAAAGCCGTCGAGGGATTGTTGCAACTCGATCAAGGAAGCGGTGGAGAA 180
Query 172 AGATTTTAGCTGTCTCTGCACCATCTACAACACTCCTGGTTTACTCGCTCAGTTCAACAT 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGATTTTAGCTGTCTCTGCACCATCTACAACACTCCTGGTTTACTCGCTCAGTTCAACAT 240
Query 232 CACTACAGATCAAGCTCTCGGTCTCAACCTTCGATGTGGAGTCAACACTGATCTATCCGC 291
|||||| |||||||||||| ||||||| | ||||||||| |||||||||||||| |||||
Sbjct 241 CACTACTGATCAAGCTCTCAGTCTCAATCGTCGATGTGGCGTCAACACTGATCTCTCCGC 300
Query 292 TTGTTCCGGTTCTGGTGCTCCACCACCACCACCTGATCTATTTCCTCCACCTTCAGCTCA 351
||||||||||||||| ||||||||||||||| ||| | |||||||||| || |
Sbjct 301 TTGTTCCGGTTCTGGAACTCCACCACCACCAC---ATC-----C-TCCACCTTCACCTGA 351
Query 352 AATGCTCCCTCCACCTCCAGCTTCGTCACCT 382
||| | |||||||||||||||| |||||
Sbjct 352 AATTATATTTCCACCTCCAGCTTCGACACCT 382
> Ahg493041 jgi|Araly1|493041|fgenesh2_kg.7__2474__AT4G18250.1
Length=2559
Score = 922 bits (499), Expect = 0.0
Identities = 883/1064 (83%), Gaps = 43/1064 (4%)
Strand=Plus/Plus
Query 1216 GTTAAAACTCATACTTGGAGTTTCATCAG-TATTGGCTACAATGATCA---TTATTGTGA 1271
|||||||| ||||||||||| ||| ||| | || ||| |||||| || ||||||
Sbjct 1371 GTTAAAACCCATACTTGGAGGCTCAGCAGCT-TTAGCTGTGTTGATCATTCTTGTTGTGA 1429
Query 1272 TTGTGGGA-AAGGTTAGAGCAAATAAT---ATGAGAAAGAGTGATTTGAATGA-GAAGAA 1326
||| || | | || |||||||| ||| | ||||||||||| ||||| || | ||||
Sbjct 1430 TTGCGGCAGTA-GTGAGAGCAAAGAATGCGAAAAGAAAGAGTGAATTGAACGACG-AGAA 1487
Query 1327 CATGGAAGCAGTGGTAATGTTGAAACGATT-TAGTTATGTACAAGTCAAGAAGATGACAA 1385
||| ||||| || || ||||| ||||| || ||||| || | ||||||||||||||||||
Sbjct 1488 CATTGAAGCGGTTGTGATGTTAAAACG-TTATAGTTTTGAAAAAGTCAAGAAGATGACAA 1546
Query 1386 AATCATTTGAGAATGTTCTTGGGAAAGGGGGATTTGGAACTGTCTATAAAGGGAAGTTAC 1445
| || ||||| ||||| | |||||||| ||||||||||||||||||||||| || |||
Sbjct 1547 ACTCGTTTGATCATGTTATAGGGAAAGGAGGATTTGGAACTGTCTATAAAGGAAAACTAC 1606
Query 1446 CTGATG---GCAGCCGAGATGTTGCAGTGAAGATCTTGAAGGAGTCAAACGAGG-ATGGA 1501
| |||| || |||||||| ||||| ||||||||||||| |||||||| | || |||||
Sbjct 1607 CGGATGCTAGCGGCCGAGATATTGCACTGAAGATCTTGAAAGAGTCAAA-GGGGAATGGA 1665
Query 1502 GAAGACTTCATCAATGAAATAGCTAGCATGAGTAGGA-CATCTCATGCTAATATCGTTTC 1560
||||| |||||||||||| ||| ||||||||||| || | ||||||| ||||||||||||
Sbjct 1666 GAAGAGTTCATCAATGAACTAGTTAGCATGAGTA-GAGCTTCTCATGTTAATATCGTTTC 1724
Query 1561 TCTACTTGGATTCTGTTATGAAGGGAGGAAGAAAGCTATAATTTACGAGTTGATGCCGAA 1620
||| ||||||| |||||||||||||| ||| |||||| || |||||||| ||||||||
Sbjct 1725 TCTGTTTGGATTTTGTTATGAAGGGAGCCAGAGAGCTATTATCTACGAGTTCATGCCGAA 1784
Query 1621 TGGATCCCTCGACAAGTTCATCTCCAAGAATATGTCGGCGAAGATGGAATGGAAAACGTT 1680
||||| || |||||||| || ||| |||||||||| ||||||| || |||||||||||
Sbjct 1785 CGGATCGCTTGACAAGTTTATATCCGAGAATATGTCTACGAAGATAGACTGGAAAACGTT 1844
Query 1681 ATACAACATTGCGGTAGGTG-TGTCTCATGGCCTAGAATACTTGCATAGCCA-TTGTGTA 1738
|||||||||||| ||||||| || ||| || |||| |||||||| | | |||||||
Sbjct 1845 ATACAACATTGCCGTAGGTGTTG-CTCGCGGGTTAGAGTACTTGCACA-ATAGTTGTGTA 1902
Query 1739 T-CAAGGATTGTACATTTCGATATAAAGCCACAGAACATACTCATAGATGGAGACTTATG 1797
| ||| |||||| ||||||||||||||||||||||| ||||||||||| | |||||| ||
Sbjct 1903 TCCAA-GATTGTGCATTTCGATATAAAGCCACAGAATATACTCATAGACGAAGACTTTTG 1961
Query 1798 CCCTAAGATTTCGGATTTCGGTCTTGCTAAGCTT-TGCAAAAATAATGAAAGCATCATTT 1856
||| ||||||||||||||||||||||||||| || |||||||| || ||||| ||||| |
Sbjct 1962 CCCGAAGATTTCGGATTTCGGTCTTGCTAAG-TTGTGCAAAAAGAAAGAAAGTATCATAT 2020
Query 1857 CAATGCTACATGCAAGAGGCACCA-TAGGGTACATTGCTCCAGAAGTGTTCTCCCAGAAT 1915
||||| || | || ||||| | || |||| ||||||||||| ||| |||| ||| ||||
Sbjct 2021 CAATGTTAGACGCGAGAGGGA-CAGTAGGCTACATTGCTCCTGAAATGTTTTCCAAGAAC 2079
Query 1916 TTTGGAGGAGTTTCTCATAAGTCTGATGTGTATAGTTATGGAATGGTGGTTCTTGAGATG 1975
| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2080 TATGGAGGAGTTTCGCATAAGTCGGATGTGTATAGTTATGGAATGGTGGTTCTTGAGATG 2139
Query 1976 ATTGGAGCAAGGAACATAGGAAGA-GCTCAAAA-TGCTG-GATCCAGTAATACTTCAATG 2032
|| || || | ||| | || |||| | | |||| | || || ||| ||| | |||||||
Sbjct 2140 ATCGGGGCGACGAAAAGAG-AAGAAGTT-AAAACTTCTACGA-CCAATAAAAGTTCAATG 2196
Query 2033 TACTTTCCAGATTGGATTTATAAAGATCTTGAGAAAGGA--GAAATCATGAGTTTTTTGG 2090
||||||||||||||| | ||| | |||||||||| ||| |||| |||||| | || |
Sbjct 2197 TACTTTCCAGATTGGGTCTATGAGGATCTTGAGA--GGAAAGAAACCATGAGACTATTAG 2254
Query 2091 CAGATCAAATAACCGAAGAAGAAGATGAGAAGATAGTAAAGAAAATGGTATTGGTGGGTC 2150
|||||| | || |||||||||||| ||||||||||| ||||||||| ||| || |||
Sbjct 2255 AAGATCATAGAATCGAAGAAGAAGAAGAGAAGATAGTGAAGAAAATGACATTAGTAGGTT 2314
Query 2151 TGTGGTGTATTCAGACCAATCCATATG-ATCGTCCACCAATGAGCAAAGTTGTTGAAATG 2209
|||||||||| ||||||||||||| || |||||||||||||||| |||||||||||||||
Sbjct 2315 TGTGGTGTATACAGACCAATCCAT-TGGATCGTCCACCAATGAGAAAAGTTGTTGAAATG 2373
Query 2210 TTAGAGGGAAGTCTAGAGGCTCTCCAGATTCCACCTAAGCCTCT 2253
||||||||||||||||| ||||| ||| | ||||||||||||||
Sbjct 2374 TTAGAGGGAAGTCTAGAAGCTCTACAGGTCCCACCTAAGCCTCT 2417
> Ahg346167 jgi|Araly1|346167|fgenesh1_pg.C_scaffold_4002509
Length=816
Score = 383 bits (207), Expect = 4e-105
Identities = 559/722 (77%), Gaps = 52/722 (7%)
Strand=Plus/Plus
Query 439 GTCAAGGAGCTTTACGATAGAAAACAAATGCCAATACACCATATGGCCTGCAACCTACGG 498
||| |||| |||||||||||| ||||||||| ||||||| |||||||||||| |||||
Sbjct 63 GTCGAGGAACTTTACGATAGAGAACAAATGCGAATACACTATATGGCCTGCATCCTACAC 122
Query 499 CTA-TAGGAGATCACTAGAAACAACCGGTTT-TGTTCTTGAGAAAGGAGAGACGCGTACC 556
||| ||| |||| || ||||||| || ||| | ||| || |||||| |||||||||||
Sbjct 123 CTACCAGG-GATCGCTCGAAACAAACGCTTTCCG-TCTGGACAAAGGACAGACGCGTACC 180
Query 557 ATCAAAGCGCCGTCATCATGGATAGGTCGTTTCTGGGGTAGGACACTCTGCTCCACCAAC 616
|| ||||| |||| || |||||||||| |||||||||||||| | ||| | ||||||
Sbjct 181 GTCCAAGCGACGTCGTCGTGGATAGGTCAATTCTGGGGTAGGACGTTGTGCACGACCAAC 240
Query 617 TCAACAGGGGGTTTCTCATGTGCCACGGGAGACTGCACCTCCGGAAAAATCAAGTGCCTC 676
||| |||||||||||||||| ||| |||||||| | |||||| || | |||| |||
Sbjct 241 TCATCAGGGGGTTTCTCATGCATCACTGGAGACTGTAACTCCGGCGAACTTGAGTG-CTC 299
Query 677 GGTATC-C-CCATAGA-TC--C-A--A---CAACAGTGGTCGAGTTTAA---C-CT-CG- 719
| ||| | || | | | | | |||| | | ||||||||| | || ||
Sbjct 300 TG-ATCGCGTTGTAAACACGACAATTATGGCAACTTTAGCCGAGTTTAATCTCGCTGCGA 358
Query 720 CTTCT---TACGGTGTCGACTATTATGTCGTCAACGTCTTCAATGGTTACAACCTCCCTT 776
|| || | ||||| |||||||| | ||||| |||| |||||||||||||||||||||
Sbjct 359 CTCCTGAGGATGGTGTAGACTATTACGACGTCAGCGTCATCAATGGTTACAACCTCCCTT 418
Query 777 TGCTTGTGACCCCCGAGAACAAAAACTGCAGAA-GCATTGAATGCGTTATTGACATGAAC 835
||||||| |||||||||||| |||| ||| ||| |||| | |||| || ||||| |||||
Sbjct 419 TGCTTGTAACCCCCGAGAACGAAAAGTGC-GAAAGCATCGGATGCATTGTTGACTTGAAC 477
Query 836 GAG-ACATGTCCCTCGGAGCTAATGGT-GAACAGTAGTGGC-CTTGGATCGCACCATCCA 892
|| || ||||| |||||||| | ||| || || ||| | | | |||||| || |||||
Sbjct 478 -AGGACGTGTCCATCGGAGCTGA-GGTTGAGCAATAGCGACACC-GGATCGAACGATCCA 534
Query 893 ATAGCCTGCATGACCACTTGTCAG-AGATACCA-GTTGCCAGAGCTTTGCTGTATCGGAC 950
| ||||||| |||| | |||||| | | || | || | ||||| |||||||| | |||
Sbjct 535 TTTGCCTGCAGGACCTCGTGTCAGCAAA-AC-ATGTCGGCAGAGATTTGCTGTGTTGGAA 592
Query 951 TCT-C-TT-CTGGGG----TGGTCGTACCACCGGGAATA-TGCAAGCGGACGA-TCTACT 1001
|| | || | | || || ||||| ||||| || | ||||||||||||| | ||||
Sbjct 593 ACTACGTTGCAGAGGACAATG-TCGTAGGACCGG-AAGAATGCAAGCGGACGAAT-TACT 649
Query 1002 CGCGGACATTCAATAACGTGTGCCCAAGCGCTTATAGTTACGCCTACGACGTTGATAACA 1061
||| ||| ||||| |||||||||||| |||||||||| |||||||||||| | ||| |
Sbjct 650 CGCAGACTTTCAACAACGTGTGCCCACGCGCTTATAGCTACGCCTACGACACTAATAGTA 709
Query 1062 GCAGTTTCACTTGTCCAA-ACTTCTCCAACTTTGTCATCACGTTTTGTCCGTCTAGCTCA 1120
||| |||||| |||| | ||| |||||||||||||||||||||||| ||||||||| ||
Sbjct 710 GCACTTTCACATGTC-AGTACTCCTCCAACTTTGTCATCACGTTTTGCCCGTCTAGCACA 768
Query 1121 AC 1122
||
Sbjct 769 AC 770
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90807144080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5