BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G70270.1

Length=461
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg476150 jgi|Araly1|476150|fgenesh2_kg.2__1280__AT1G70270.1         507    4e-143


> Ahg476150 jgi|Araly1|476150|fgenesh2_kg.2__1280__AT1G70270.1
Length=431

 Score =  507 bits (274),  Expect = 4e-143
 Identities = 364/405 (90%), Gaps = 15/405 (4%)
 Strand=Plus/Plus

Query  1    AAAGTGTTGTCACTCAACAAAAAGGCAATGGAGGAGTCGAAGAAATACAAAAGTATGGTG  60
            |||||||||||||||||||||||| |||||||||| ||||||||||||   || | ||||
Sbjct  1    AAAGTGTTGTCACTCAACAAAAAGACAATGGAGGACTCGAAGAAATACTTGAGGACGGTG  60

Query  61   AAGCAGACGATGAATAAGAAGAAGAAAAACAACAACAAGAA-GGGTCACGGATCTGGATC  119
            ||||||||||||||||||||||||| |||||||||||| || |  ||| || ||||||||
Sbjct  61   AAGCAGACGATGAATAAGAAGAAGAGAAACAACAACAA-AACGAATCATGGGTCTGGATC  119

Query  120  ACGATCCGGGTTACTCCAAATGAAGGTGAGGAGGCTCCAAATACTGATACCGGGCGGGCA  179
            ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct  120  ACGATCCGGGTTACTACAAATGAAGGTGAGGAAGCTCCAAATACTGATACCGGGCGGGCA  179

Query  180  GACATGCAACCACCCGGATCTGCTTTTATCAAAGACCGTTGATTATATTGTGCATTTGAA  239
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  180  GAGATGCAACCACCCGGATCTGCTTTTATCAAAGACCGTTGATTATATTGTGCATTTGAA  239

Query  240  GTTGAAGCTTAGGTTCCTTAAAGCAATCTCCGAAATGTACTCTCTTTGAAAATCGTAAGA  299
            ||||||||||||||||||||||||| || |||| |||||||||||||||| |||||||||
Sbjct  240  GTTGAAGCTTAGGTTCCTTAAAGCACTCGCCGATATGTACTCTCTTTGAAGATCGTAAGA  299

Query  300  TTTGTAAAACTATTCTTCTTCTTGTCT-TCGGTACTATATAGCTATGGTGTCGAAGTTTA  358
            || |||    | | |||||| |  ||  ||||||||||||||||||||||||||||||||
Sbjct  300  TTCGTA----T-T-CTTCTTGTCATCGATCGGTACTATATAGCTATGGTGTCGAAGTTTA  353

Query  359  GTTTTCCGTAT-TATCGAT--TAT--CATTTGTAGTTTGCTTTAT  398
             |||||| ||| |||||||  |||  | |||||||||||||||||
Sbjct  354  ATTTTCC-TATATATCGATAATATATCGTTTGTAGTTTGCTTTAT  397



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16673992393


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5