BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70280.2
Length=1958
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476152 jgi|Araly1|476152|fgenesh2_kg.2__1282__AT1G70280.2 2699 0.0
Ahg472649 jgi|Araly1|472649|fgenesh2_kg.1__2603__AT1G23880.1 830 0.0
> Ahg476152 jgi|Araly1|476152|fgenesh2_kg.2__1282__AT1G70280.2
Length=1872
Score = 2699 bits (1461), Expect = 0.0
Identities = 1754/1886 (93%), Gaps = 58/1886 (3%)
Strand=Plus/Plus
Query 1 ACTGAGACACTGTCTTCACTCTTTTTTGCTTATCAAC-AAACTCTGCACAAATCTTAACC 59
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 1 ACTGAGACACTGTCTTCACTCTTTTTTGCTTATCAACAAAACTCTGCACAAATC-TAACC 59
Query 60 TCTCTGTTTCTTCTCTTTAATTCTCTCTTTCATCGAAAGAAACCTCAAATTTCAAATCTT 119
|||||| || || || || ||||||| |||||||||||||||||||||||
Sbjct 60 TCTCTG----TT-TC-------CT-TC-TTCATCG--AGAAACCTCAAATTTCAAATCTT 103
Query 120 CGCATTGTCCGCCATTCTTA-TACTTCCCCTAGAGAAGCTTCTTAGGGTTCTTAGTTTCT 178
|||||||||||||||||||| | ||||||| |||||||||||||| | | ||| |
Sbjct 104 CGCATTGTCCGCCATTCTTACT-CTTCCCCCAGAGAAGCTTCTTA-----C-T--TTT-T 153
Query 179 TCCTCTGCCGCGTCTTCTCAAGTTTAAAACTTGTCTCTTCTTCTTCAAATCCAATCAATG 238
||||||| | || | ||| ||||||||| |||||||||||||| ||||| ||||||||
Sbjct 154 TCCTCTG-C-CG-C-TCTAAAGTTTAAATCTTGTCTCTTCTTC--AAAATCGAATCAATG 207
Query 239 GGTAGAGATTTTCTAGTTCTAAGTATTCTCATTCTACTTCTCTCTGGGATTGTATCTTCA 298
|||||||||||||| ||||| ||||||||||||||||| ||||||||| |||| ||||||
Sbjct 208 GGTAGAGATTTTCTTGTTCTGAGTATTCTCATTCTACTCCTCTCTGGGTTTGTTTCTTCA 267
Query 299 GCTCCTTCAGCTAATTCTCCTGCAAAGATTCTTAATGGGTTTATCTCAAATCATGGCTCT 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 GCTCCTTCAGCTAATTCTCCTGCAAAGATTCTTAATGGGTTTATCTCAAATCATGGCTCT 327
Query 359 TCACTAATGAAATGGTTATGGTCACTCAAAACCACAACCAAAACAACTATTGCAACGAGA 418
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 328 TCTCTAATGAAATGGTTATGGTCACTCAAAACCACAACCAAAACAACTATTGCAACGAGA 387
Query 419 TCGATGGTGAAATTCGAAAATGGGTATAGTGTAGAGACTGTGTTTGATGGAAGTAAACTT 478
|||||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||||
Sbjct 388 TCGATGGTGAAATTTGAAAATGGGTATAGTGTAGAGACAGTGTTCGATGGAAGCAAACTT 447
Query 479 GGTATTGAACCGTATTCTATTGAAGTCTTACCAAACGGAGAGTTACTTATTCTTGATTCT 538
||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||
Sbjct 448 GGTATTGAACCGTATTCGATTGAAGTCTTACCAAACGGCGAGCTACTTATTCTTGATTCT 507
Query 539 GAGAACAGTAACATCTACAAGATCTCATCTTCTCTTTCATTATATAGCAGGCCAAGACTG 598
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 508 GAGAACAGTAACATCTACAAGATCTCATCTTCTCTTTCATTATATAGCAGGCCGAGACTG 567
Query 599 GTTACTGGCTCCCCTGAAGGATATCCAGGTCATGTTGACGGGAGATTACGTGATGCGAAG 658
||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 568 GTTACTGGCTCTCCTGAAGGATATCCGGGTCATGTGGACGGGAGATTACGTGATGCGAAG 627
Query 659 CTGAACCATCCTAAGGGGCTTACGGTTGATGACAGAGGAAATATATATGTGGCTGATACT 718
||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 628 CTGAATCATCCTAAAGGGCTTACGGTTGATGACAGAGGAAACATATATGTGGCTGACACT 687
Query 719 GTGAATAATGCTATCCGGAAGATAAGTGAAGGAGGAGTTACAACTATTGCCGGGGGCAAA 778
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 688 GTGAATAATGCTATCCGGAAGATAAGTGAAGGAGGAGTTACAACAATTGCTGGGGGCAAA 747
Query 779 ACGGTTCGAAATGGAGGGCATGTGGATGGACCAAGTGAAGATGCAAAGTTTTCAAATGAT 838
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 748 ACGGTTCGAAATGGAGGGCATGTGGATGGACCAAGTGAAGATGCAAAGTTTTCCAATGAT 807
Query 839 TTTGATGTTGTTTATGTTGGAAGTAGTTGTTCTCTGCTTGTTATTGACCGTGGAAACAAA 898
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||
Sbjct 808 TTTGATGTTGTTTATGTTGGAAGTAGTTGTTCTCTTCTTGTTATTGACCGAGGAAATAAA 867
Query 899 GCTATCAGAGAGATTCAACTCCATTTCGATGACTGTGCTTATCAGTATGGAAGCGGGTTT 958
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 868 GCCATCAGAGAGATTCAACTCCATTTCGATGACTGTGCTTATCAGTATGGAAGCGGGTTT 927
Query 959 CCTCTTGGGATTGCTGTTCTTGTTGCTGCAGGTTTCTTTGGTTATATGCTAGCTCTGTTG 1018
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 928 CCTCTTGGGATTGCGGTTCTTGTTGCTGCAGGTTTCTTTGGTTATATGCTAGCTCTGTTG 987
Query 1019 CAACGAAGAGTCGGCTCTATCGTGTCTTCTCATAATGATCAAGAAATGTTCGAAGCTGAT 1078
|||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 988 CAACGAAGAGTCGGTTCTATCGTTTCTTCTCATAATGATCAAGAAATGTACGAAGCTGAT 1047
Query 1079 CCTGATCAAAAGCCTATGAAA-CATTCCAGACCATCTCTGATTCCGGCTGGAGACGAGCA 1137
|||||||||||| |||||||| || || ||||||||||| ||||| | ||||| |||||
Sbjct 1048 CCTGATCAAAAGTCTATGAAACCA-TCTAGACCATCTCTTATTCCAACCGGAGATGAGCA 1106
Query 1138 GCTAGAGAAACAAGAGGAAACATTTGTGGTATCGCTGGGAAAACTCGTTTCAAATGCTTG 1197
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1107 GCAAGAGAAACAAGAGGAAACCTTTGTGGTATCGCTGGGAAAACTCGTTTCAAATGCTTG 1166
Query 1198 GGAGTCAGTTATGGAGATCCTTAGAAAAAAGCAGACAGGCACCAGCTTTCAGCAGTACCA 1257
||| || |||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1167 GGATTCCGTTATGGAGATCCTCCGAAAAAAGCAGACAGGCACCAGCTATCAGCAGTACCA 1226
Query 1258 TGGGACAACAAAGCAGTCTGCTGCATTTAGCACATCAACTCCATGGCCAATTCAAGAGAG 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1227 TGGGACAACAAAGCAGTCTGCTGCATTTAGCACATCAACTCCATGGCCAATTCAAGAGAG 1286
Query 1318 CTTTGTGATTCGAGACGAAGACGGACCTCCTCCTGTTGAGCCCAGGAACCCAACTCCAAG 1377
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1287 CTTTGTGATTCGAGACGAAGACGAACCTCCTCCAGTTGAGCCCAGGAACCCAACTCCAAG 1346
Query 1378 AAAGACTTATGCTTTTATGTCCAAAGATGCAGAGAAAATGCAGCAGCTACGTCAGAGCCG 1437
||| ||||||||||||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 1347 AAAAACTTATGCTTTTATGTCCAAAGACGCTGAGAAAATGCAGCAGCTGCGTCAGAGCCG 1406
Query 1438 CGCATTCTACAGTAGCTGGGACGCTGAGTTCCCCAACcagcagcaacagcagcaaaagca 1497
||||||||||||||||||||||| || |||||||| ||||| | ||||||||||||||
Sbjct 1407 TGCATTCTACAGTAGCTGGGACGCAGAATTCCCCAATCAGCA--A-CAGCAGCAAAAGCA 1463
Query 1498 gcaccagaagcatcagcatcagcaacaacagcagcagcagcaTCGAAGGCATTACTCATC 1557
|||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 1464 GCACCAGAAGCATCAGCATCAGCA------GCAGCA------TCGAAGGCATTACTCATC 1511
Query 1558 GATCCCGCATACTTATTATGAGCAGGACAGTGAAAAGTCTAATGAGATAGTCTTTGGAGC 1617
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 1512 GATCCCGCATACTTATTATGAGCAGGACAGTGAAAAAACTAATGAGATAGTCTTCGGAGC 1571
Query 1618 GGTCCAAGAACAGAGCAGCAAGCGTGTGGCTAAGCCTAAGCCGAAGCCTATAGAGTCTGG 1677
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1572 GGTCCAAGAACAGAGCAGCAAGCGCGTGGCTAAGCCTAAGCCGAAGCCTATAGAGTCTGG 1631
Query 1678 AGATCAAATGAATAATAATACTCAACAGAATCTTCACTACAGATCTCATTCTGTTAGTTA 1737
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1632 AGATCAAATGAATAATA---CTCAACAGAATCTTCACTACAGATCTCATTCTGTTAGTTA 1688
Query 1738 CCCATATGGATACTATCCTAATACATGAAAAGTCTCCGGTTTTGTGCGTTTCTGAGATTA 1797
|||||||||||||||||| |||||||||||||||||||||||||| |||| || |||||
Sbjct 1689 CCCATATGGATACTATCCGCATACATGAAAAGTCTCCGGTTTTGTGAGTTTATGGGATTA 1748
Query 1798 TCAGTCTTCCTTAATAAGATTATGCAGGGAATTAAAT-TTTTTGGGTATAGGTG--TTTG 1854
| |||||||||||||||||||||||||| ||| |||| |||||||||||||||| ||||
Sbjct 1749 TAAGTCTTCCTTAATAAGATTATGCAGGAAATGAAATATTTTTGGGTATAGGTGGGTTTG 1808
Query 1855 TATTGGGGAATTTTAAGAGTATGCTC 1880
|||||||||||||||||| |||||||
Sbjct 1809 TATTGGGGAATTTTAAGATTATGCTC 1834
Score = 71.3 bits (38), Expect = 3e-11
Identities = 40/41 (98%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 1899 CTCATACTTTGATTGTATTGGGTAATATATATATGAAAAAA 1939
||||||||||||||||||||||||||||||||||| |||||
Sbjct 1832 CTCATACTTTGATTGTATTGGGTAATATATATATGGAAAAA 1872
> Ahg472649 jgi|Araly1|472649|fgenesh2_kg.1__2603__AT1G23880.1
Length=1990
Score = 830 bits (449), Expect = 0.0
Identities = 785/943 (83%), Gaps = 39/943 (4%)
Strand=Plus/Plus
Query 236 ATGGGTAGAG-ATTTTCTAG-TTCTAAGTATTCTCATTCTAC-TTCTCTCTGGGATTGTA 292
||| |||| | ||||||| | |||| ||||| ||||||| | | ||||||||| |||||
Sbjct 426 ATGAGTAG-GCATTTTCT-GTTTCTGGGTATTATCATTCT-CATCCTCTCTGGGTTTGTA 482
Query 293 TCTTCAGCTCCTTCAGCTAATTC-TCCTGCAAAGATTCTTAATGGGTTT-ATCTCAAATC 350
|||||||||||||| | ||||| || |||| ||||| ||||| |||| ||||| ||||
Sbjct 483 GCTTCAGCTCCTTCA-CCAATTCTTCTTGCAGAGATTGTTAAT-AGTTTCATCTCGAATC 540
Query 351 ATGGCTCTTCAC-TAATGAAATGGTTATGG----TCAC--TCAAAACCACAACCAAAACA 403
||||| |||| | ||||||||||||||||| || | |||||||||| || ||||||
Sbjct 541 ATGGCACTTC-CTTAATGAAATGGTTATGGTCTCTCTCTTTCAAAACCACCACTAAAACA 599
Query 404 ACTATTGCAACGAGATCGATGGTGAAATTCGAAAATGGGTA-T-AGTGTAGAGACTGTGT 461
|| || | |||| ||||||||||||||| ||||||||||| | |||| || || ||||
Sbjct 600 GCTGTTTCTACGAAATCGATGGTGAAATTTGAAAATGGGTATTCAGTG--GAAACGGTGT 657
Query 462 TTGATGGAAGTAAACTTGGTATTGAACCGTATTCTATTGAAGTCTTACCAAACGGAGAGT 521
| || ||||| ||||| ||||| ||||| |||||| || | |||||||| || || || |
Sbjct 658 TAGACGGAAGCAAACTCGGTATCGAACCTTATTCTCTTCAGGTCTTACCTAATGGCGAAT 717
Query 522 TACTTATTCTTGATTCTGAGAACAGTAACATCTACAAGATCTCATCTTCTCTTT-CATTA 580
|||||||||| |||||| |||| |||||| | |||||||| ||||||||||||| | ||
Sbjct 718 TACTTATTCTGGATTCTCAGAATAGTAACCTTTACAAGATTTCATCTTCTCTTTCCCTT- 776
Query 581 TATAGCAGGCCAAGACTGGTTACTGGCTCCCCTGAAGGATATCCAGGTCATGTTGACGGG 640
|||||||| || || ||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 777 TATAGCAGACCGAGGCTGGTTACTGGCTCCCCTGAAGGATATCCGGGTCATGTGGATGGA 836
Query 641 AGATT-ACGTGATGCGAAG-CTGAACCATCCTAAGGGGCTTACGGTTGATGACAGAGGAA 698
||||| | | || ||| || ||||| |||||||||| || ||||||||||| |||||||
Sbjct 837 AGATTGA-GAGACGCG-AGATTGAACAATCCTAAGGGACTCACGGTTGATGATAGAGGAA 894
Query 699 ATATATATGTGGCTGATACTGTGAATAATGCTATCCGGAAGATAAGTGAAGGAGGAGTTA 758
|||| ||||| || ||||||||||||||||||||| ||||||| ||||||| |||||| |
Sbjct 895 ATATCTATGTTGCAGATACTGTGAATAATGCTATCAGGAAGATCAGTGAAGCAGGAGTCA 954
Query 759 CAACTATTGCCGGGGGCAAAACGGTTCGA-AATGGAGGGCATGTGGATGGACCAAGTGAA 817
|||| ||||| ||||| |||| ||||| | ||||| ||||||||||| |||||||||
Sbjct 955 CAACCATTGCTGGGGGAAAAATGGTTC-ATGGGGGAGGTCATGTGGATGGTCCAAGTGAA 1013
Query 818 GATGCAAAGTTTTCAAATGATTTTGATGTTGTTTATGTTGGAAGTAGTTGTTCTCT-GCT 876
|||||||||||||||||||||||||||||||||||| | ||||| |||||||| || |||
Sbjct 1014 GATGCAAAGTTTTCAAATGATTTTGATGTTGTTTATCTCGGAAGCAGTTGTTC-CTTGCT 1072
Query 877 TGTTATTGACCGTGGAAACAAAGCTATCAGAGAGATTCAACTCCATTTCGATGACTGTGC 936
|| |||||||| || ||| |||| |||||||||||||||||||||||||| ||||||||
Sbjct 1073 AGTCATTGACCGCGGGAACCAAGCCATCAGAGAGATTCAACTCCATTTCGACGACTGTGC 1132
Query 937 TTATCAGTATGGAAGCGGGTTTCCTCTTGGGATTGCTGTTCTTGTTGCTGCAGGTTTCTT 996
| ||||||||||||| || ||||||||||||||||| |||||||| || ||| ||||||
Sbjct 1133 TGATCAGTATGGAAGTGGCTTTCCTCTTGGGATTGCAGTTCTTGTAGCAGCAATTTTCTT 1192
Query 997 TGGTTATATGCTAGCTCTGTTGCAACGAAGAGTCGGCTCTATCGTGTCTTCTCATAATGA 1056
||| |||||||| ||| |||||||||| ||| || | |||||| | || | ||||| |||
Sbjct 1193 TGGCTATATGCTGGCTTTGTTGCAACGTAGACTCAGTTCTATCATTTCATATCATACTGA 1252
Query 1057 TCAAGAAATGTTCGAAGCTGAT-CCTGATCAAAAGCCTATGAAACAT-TCCAGACCATCT 1114
||||||| | || ||||||| | ||||||||| | ||||| |||| || |||||| |
Sbjct 1253 TCAAGAAGTATTTGAAGCTG-TGCCTGATCAAGATCCTATAAAACCGGTC-AGACCACCG 1310
Query 1115 CTGATTCCGGCTGGAGACGAGCAGCTAGAGAAACAAGAGGAAA 1157
|||||||| ||||||||||||| ||| |||||||| ||||
Sbjct 1311 CTGATTCCAACTGGAGACGAGCA---AGAAAAACAAGAAGAAA 1350
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73590353340
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5