BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70300.1
Length=2859
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926343 jgi|Araly1|926343|scaffold_201904.1 3565 0.0
Ahg325951 jgi|Araly1|325951|fgenesh1_pm.C_scaffold_6001171 874 0.0
> Ahg926343 jgi|Araly1|926343|scaffold_201904.1
Length=2394
Score = 3565 bits (1930), Expect = 0.0
Identities = 2243/2396 (94%), Gaps = 13/2396 (1%)
Strand=Plus/Plus
Query 380 TTTTCACAAAAGCCCACCATGGAAATCGAATCAGGAAGTTATCAAAAC---GCCAAGAAG 436
||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 5 TTTTCACAAAAACCCACCATGGAAATCGAATCTGGAAGTTATCAAAACATTGCCAAGAAG 64
Query 437 GAATCATGGAGAACAGTATTAACATTAGCGTATCAAAGCTTAGGTGTTGTATACGGAGAC 496
||||| ||||||||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 65 GAATCGTGGAGAACAGTGTTGACATTAGCGTATCAAAGCTTAGGTGTTGTATATGGAGAT 124
Query 497 TTGAGTATTTCACCTCTATATGTATACAAAAGCACATTCGCTGAAGACATTCATCACTCT 556
||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 125 TTGAGTATTTCTCCTTTATATGTATACAAAAGCACATTCGCTGAAGACATTCGTCACTCT 184
Query 557 GAATCCAACGAAGAGATCTTTGGTGTTTTGTCTTTCATCTTTTGGACAATCACTCTTGTC 616
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 GAGTCCAATGAAGAGATCTTTGGTGTTTTGTCTTTCATCTTTTGGACAATCACTCTTGTC 244
Query 617 CCTCTTCTTAAATACGTTTTCATAGTTCTTAGAGCAGATGATAATGGTGAAGGAGGCACT 676
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 CCTCTTCTCAAATACGTTTTCATAGTTCTTAGAGCAGATGATAATGGTGAAGGAGGCACT 304
Query 677 TTTGCTCTTTACTCGCTTTTATGTCGACACGCACGAGTCAACTCGTTACCGAGTTGTCAA 736
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 305 TTTGCTCTTTACTCTCTTCTATGTCGACACGCACGAGTCAACTCGTTACCGAGTTGTCAA 364
Query 737 TTGGCTGATGAGCAGCTTATTGAGTATAAGACTGATTCAATT-GGT--TCGTCTTCGATG 793
|||||||||||||||||||| |||||||||||||| || ||| ||| ||||| ||||||
Sbjct 365 TTGGCTGATGAGCAGCTTATAGAGTATAAGACTGACTCGATTGGGTCGTCGTCGTCGATG 424
Query 794 CCTCAATCTGGTTTTGCAGCGAGTTTGAAATCTACTCTTGAGAAACATGGAGTTTTGCAG 853
|||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 425 CCTCAATCGGGTTTTGCAGCGAGTTTGAAATCTACCCTTGAGAAACATGGAGTGTTGCAG 484
Query 854 AAGATTTTGCTTGTTCTTGCTTTGATTGGGACTTGTATGGTTATTGGTGATGGTGTTCTC 913
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 485 AAGATTTTGCTTGTTCTTGCTTTGATTGGGACTTGTATGGTGATTGGTGATGGTGTTCTT 544
Query 914 ACGCCTGCTATTTCAGTTTTTTCTGCAGTATCTGGTGTTGAGCTTTCAATGTCTAAGGAG 973
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 ACGCCTGCGATTTCAGTTTTTTCTGCAGTATCTGGTGTTGAGCTTTCAATGTCTAAGGAG 604
Query 974 CATCACAAGTATATAGAACTCCCTGCTGCTTGTGTAATTCTGATAGGTTTGTTTGCACTT 1033
||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 605 CATCACAAGTACATAGAACTCCCTGCTGCTTGTATAATTCTGATAGGGTTGTTTGCACTC 664
Query 1034 CAGCACTACGGTACACACAGGGTCGGGTTCTTGTTCGCCCCGGTGATTCTGTTGTGGCTA 1093
||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||
Sbjct 665 CAGCACTACGGTACACATAGGGCCGGGTTCTTGTTCGCACCGGTGATTCTGTTGTGGCTA 724
Query 1094 ATGTGTATCAGCGCCATCGGTGTTTACAACATTTTCCATTGGAACCCGCATGTGTACCAA 1153
||||| |||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 725 ATGTGCATCAGCGCCATCGGTGTTTACAACATTTTCCATTGGAATCCGCATGTCTATCAA 784
Query 1154 GCACTTTCTCCTTATTACATGTACAAGTTCCTCAAGAAAACTCAAAGTAGAGGCTGGATG 1213
||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 785 GCACTTTCTCCCTATTATATGTACAAGTTCCTCAAGAAAACTCAAAGTAAAGGCTGGATG 844
Query 1214 TCTCTTGGTGGTATCTTACTCTGCATTACAGGTTCCGAAGCAATGTTTGCGGATCTAGGA 1273
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 TCTCTTGGTGGGATCTTGCTCTGCATTACAGGTTCCGAAGCAATGTTTGCGGATCTAGGA 904
Query 1274 CATTTTTCTCAACTCTCAATCAAGATTGCTTTTACGTCACTTGTTTACCCGTCCTTGATA 1333
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 CATTTTTCTCAACTATCAATCAAGATTGCTTTTACGTCACTTGTTTACCCGTCCTTGATA 964
Query 1334 CTCGCCTACATGGGACAAGCAGCTTATCTCTCTCAGCATCATATTATTGAAAGCGAATAC 1393
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 965 CTCGCCTACATGGGACAAGCAGCTTATCTCTCTCAGCATCATGTTATCGAAAGCGAATAC 1024
Query 1394 AATATCGGGTTTTATGTATCGGTACCAGAAAGATTAAGATGGCCAGTTCTTGTGATCGCT 1453
|||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||
Sbjct 1025 AATATCGGGTTTTATGTATCTGTACCAGAAAAACTAAGATGGCCAGTTCTTGTGATCGCC 1084
Query 1454 ATACTCGCTGCTGTAGTTGGAAGTCAAGCAATCATCACAGGAACATTCTCGATCATCAAA 1513
||||| ||||||||||||||||||||||| || || || ||||||||||| |||||||||
Sbjct 1085 ATACTTGCTGCTGTAGTTGGAAGTCAAGCCATTATAACTGGAACATTCTCTATCATCAAA 1144
Query 1514 CAATGCTCTGCATTGGGATGCTTCCCTAAAGTGAAGATTGTTCATACGTCATCCAAAATC 1573
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1145 CAATGCTCTGCATTGGGATGCTTCCCCAAAGTGAAGATTGTTCATACGTCATCCAAAATT 1204
Query 1574 CACGGTCAGATTTACATCCCTGAGATCAATTGGATCTTGATGGTTCTCTGTTTAGCTGTC 1633
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1205 CACGGTCAGATTTACATCCCTGAGATCAATTGGATCTTGATGATCCTCTGTTTAGCTGTA 1264
Query 1634 ACCATTGGCTTCAGAGACACCAAGCGGTTGGGTAATGCTTCAGGATTGGCGGTTATAACT 1693
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1265 ACCATTGGCTTCAGAGACACCAAGCGGTTGGGTAATGCTTCAGGCTTGGCGGTTATAACC 1324
Query 1694 GTTATGCTGGTGACAACATGCTTAATGTCACTAGTGATTGTACTTTGCTGGCACAAGAGT 1753
|||||||| ||||| || ||| |||||||||||||||| ||||| ||||||||||||||
Sbjct 1325 GTTATGCTTGTGACGACGTGCCTAATGTCACTAGTGATCGTACTCTGCTGGCACAAGAGC 1384
Query 1754 GTCATCTTTGCAATCGTATTCGTTGTATTCTTCGGCACAATCGAATCTCTCTACTTCTCT 1813
||| |||| ||||||| ||| ||||||||||| ||||| |||||| |||||||||||||
Sbjct 1385 GTCCTCTTGGCAATCGCATTTGTTGTATTCTTTGGCACGATCGAAGCTCTCTACTTCTCA 1444
Query 1814 GCTTCCTTAATCAAATTCCTCGAAGGCGCATGGGTTCCAATCGCCCTCGCTTTTTGCTTC 1873
|||||| |||||||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1445 GCTTCCCTAATCAAATTTCTCGAAGGCGCGTGGGTCCCAATCGCCCTCGCTTTTTGCTTC 1504
Query 1874 CTTCTCGCGATGTGTACTTGGCACTACGGAACACTCAAGCGCTATGAGTACGATGTGCAA 1933
||||| || ||||| |||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct 1505 CTTCTTGCAATGTGCACTTGGCATTACGGAACCCTCAAGCGCTATGAGTACGATGTACAA 1564
Query 1934 AACAAAGTCTCGGTCAACTGGCTCCTCAGTCTTAGTCAAACCCTCGGGATCGCACGTGTC 1993
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1565 AACAAAGTCTCGGTCAACTGGCTCCTCAGCCTCAGTCAAACCCTCGGGATCGCACGTGTC 1624
Query 1994 CGTGGCCTTGGACTCATCCACACCGAGCTCGTCTCTGGTGTCCCCGCGATATTCTCTCAT 2053
|||||||| |||||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 1625 CGTGGCCTCGGACTCATCCACACCGAGCTTGTATCTGGTGTCCCCGCAATATTCTCTCAT 1684
Query 2054 TTTGTCACCAACCTCCCTGCCTTCCACCAGGTTCTCGTCTTCCTCTGTGTCAAATCTGTT 2113
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1685 TTTGTCACCAACCTCCCTGCCTTCCACCAGGTTCTCGTCTTTCTCTGTGTCAAATCCGTC 1744
Query 2114 CCGGTTCCGCATGTTCGTCCTC-AGGAACGGTTTCTAGTAGGACGCATCGGGCCAAAAGA 2172
|||||||| || || || || | |||||||||||||||| ||||| |||| ||||||||
Sbjct 1745 CCGGTTCCACACGTCCGACC-CGAGGAACGGTTTCTAGTCGGACGTATCGACCCAAAAGA 1803
Query 2173 GTTCCGCATATACCGTTGCATTGTCCGGTTCGGGTACCGTGATGTCCACAAAGACGATTT 2232
|||||| || ||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1804 GTTCCGAATCTACCGTTGCATTGTCAGGTTCGGGTACCGCGATGTCCACAAAGACGATTT 1863
Query 2233 CGAGTTTGAAGGCGATCTTGTATGTAGCATTGCCGAGTTTATCCGTACTGAAGCTGAAAC 2292
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1864 CGAGTTTGAAGGCGATCTTGTATGTAGCATTGCGGAGTTTATCCGTACTGAAGCTGCAAC 1923
Query 2293 CGCCGCCACCGCTGCAGAGACCAACGGAGAGGATGATGATAGAATGTCAGTAGTAGGTAC 2352
||| | ||||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 1924 CGC-G--ACCGCTGCAGAGACCAACGGAGAGGATGATGATAGAATGTCGGTAGTCGGAAC 1980
Query 2353 TTGTTCCACATACATGCAAGGAATTGAGGATCACTACGAAAGCGATATTGATGACCCTGA 2412
|||||| ||||||||||||||||| |||||||| |||||||||||| |||| |||||| |
Sbjct 1981 TTGTTCTACATACATGCAAGGAATCGAGGATCATTACGAAAGCGATCTTGACGACCCTAA 2040
Query 2413 TAAACCAGGGACGTCAGAGATTCGATCACCAAAACCAAAGAAAAAGAGTAAGAGTAAGGT 2472
||| || |||||||||||||| |||||||||||||||||||| ||||||||||||||| |
Sbjct 2041 TAAGCCCGGGACGTCAGAGATCCGATCACCAAAACCAAAGAAGAAGAGTAAGAGTAAGAT 2100
Query 2473 CAAAAAGAGAGTGAGGTTTGTTGTCCCGGAGACTCCAAAGATAGAAAAGGAAACTAGGCA 2532
||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2101 CAAAAAGAGGGTAAGGTTTGTTGTCCCGGAGACTCCAAAGATAGAGAAGGAAACTAGGCA 2160
Query 2533 AGAGTTAATGGAGCTAACAGAGGCACGAGAGGGAGGCGTGGCTTATATAATGGGAAACGC 2592
||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 2161 GGAGTTAATGGAGCTAACGGAGGCGCGTGAGGGAGGCGTGGCTTATATAATGGGAAACGC 2220
Query 2593 TTATATGAAAGCGAAGCCAGGATCAGGATTACTCAAGAGACTCGCCATTAACATTGGCTA 2652
|||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||
Sbjct 2221 GTATATGAAAGCGAAGCAAGGATCAGGATTAGTAAAGAGACTCGCCATTAACATTGGCTA 2280
Query 2653 CGAGTTTCTTAGGAGGAACACTAGAGGTCCTAGAAACATGCTTACCTCGCCTCACGCTTC 2712
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 2281 CGAGTTTCTTAGGAGGAACACTAGAGGTCCTAGAAACATGCTTACTTCGCCTAACGCTTC 2340
Query 2713 TACTTTAGAAGTCGGTATGATCTATAATGTCTAAAGGGGGGTATTTTGGTCTTTTT 2768
|||||||||||||||||||||||| ||||||||||||| || |||||| |||||
Sbjct 2341 TACTTTAGAAGTCGGTATGATCTACCATGTCTAAAGGGG--TAGTTTGGTATTTTT 2394
> Ahg325951 jgi|Araly1|325951|fgenesh1_pm.C_scaffold_6001171
Length=2346
Score = 874 bits (473), Expect = 0.0
Identities = 1455/1914 (76%), Gaps = 127/1914 (7%)
Strand=Plus/Plus
Query 430 CAAGAAGGAATCATGGAGAACAGTAT-TAACATTAGCGTATCAAAGCTTAGGTGTTGTAT 488
|||||| ||||| ||| | || || | | || ||||| || || ||||||||||| || |
Sbjct 36 CAAGAAAGAATCTTGGTGGACGGT-TCTGACTTTAGCTTACCAGAGCTTAGGTGTAGTCT 94
Query 489 ACGGAGACTTGAG-TATTTCACC-TCTATATGTATACAAAAGCACATTCGCTGAAGACAT 546
||||||| || || | |||||| | | ||||| ||||| ||||| || |||||||||||
Sbjct 95 ACGGAGA-TTTAGCAACTTCACCAT-TGTATGTCTACAAGAGCACTTTTGCTGAAGACAT 152
Query 547 -TCATCACTCTGA-ATCCAACGAAGAGATCTTTGGTGTTTTGTCT-TTCATCTTTTGGAC 603
|| || || || | | ||||||||||||||||||||| ||||| || ||||| |||||
Sbjct 153 AACA-CATTCAGAGA-CAAACGAAGAGATCTTTGGTGTTCTGTCTCTT-ATCTTCTGGAC 209
Query 604 AATCACTCTT-GTCCCTCTTCTTAAATACGT-TTTCATAGTTCTTAGAGCAGATGATAAT 661
| | ||| || |||| ||| |||||||||| ||| || |||||| | || |||||||||
Sbjct 210 ATTAACT-TTAATCCCACTTGTTAAATACGTCTTT-ATTGTTCTTCGTGCTGATGATAAT 267
Query 662 GGTGAAGGAGGCACTTTTGCTCTTTACTCGCTT-TTATGTCGACACGC-ACGAGTCAACT 719
|| ||||| || ||||| ||||| ||||| || || ||||| || || | || | | ||
Sbjct 268 GGAGAAGGTGGGACTTTCGCTCTCTACTC-TTTGTTGTGTCGCCATGCTA-GAATTAGCT 325
Query 720 CGTTACCGAGTTGT-CAATTGGCTGATGAGCAGCTTAT-TGAGTATAAGACTGA-TTCAA 776
| || || | || | || | ||||||||| | ||| | ||||||||||| | |||
Sbjct 326 CTTTGCCCAATT-TCCAGCTCGCTGATGAGGACCTT-TCTGAGTATAAGA-AAACTTC-- 380
Query 777 TTGGTTCGTCTTCGATG-CCTCAATCTGGTTTTGCAG-CGAGTTTG-AAATCTACTCTTG 833
|| | | ||||| | || ||| | | ||||||| ||| | ||||| |
Sbjct 381 -CGGGGAGAATCCGATGAGATTAA--AAGTTCCGGGGTGGAGTTTGAAAAAC-ACTCTGG 436
Query 834 AGAAACATGGAGTTT-TGCAGAAGATTTTGCTTGTTCTTGCTTTGATTGGGACTTGTATG 892
|||| ||| ||||| ||||||| || ||||||||||||||| |||||||||||||||||
Sbjct 437 AGAAGCAT-AAGTTTCTGCAGAACATGTTGCTTGTTCTTGCTCTGATTGGGACTTGTATG 495
Query 893 GTTATTGGTGATGGTGTTCTCACGCCTGCTATTTCAGTTTTTTCTGCAGTATCTGGTGTT 952
|||||||||||||||||||| || ||||| || || || || || ||||| ||||| ||
Sbjct 496 GTTATTGGTGATGGTGTTCTTACACCTGCAATCTCTGTGTTCTCCGCAGTCTCTGGA-TT 554
Query 953 -GAGCTT-TCAATGTCTAAGGAGCATCA-CAAGTATATAGAACTCCCTGCTGCT-TGTGT 1008
||| || || ||||||||| |||| || ||| ||| | || | |||| || | ||||
Sbjct 555 AGAG-TTATCCATGTCTAAGCAGCAACATCAA-TATGTGGAGGTGCCTG-TGGTCTGTGC 611
Query 1009 AATTCTGATAGGT-TTGTT-TGCACTTCAGCACTACGGTACACA-CAGGGTCGGGTTC-T 1064
||| |||||| | ||||| | | || || ||||| || ||||| | | | || || |
Sbjct 612 AATACTGATAC-TCTTGTTCT-CGCTACAACACTATGGAACACATC-GTTTAGGTTTTGT 668
Query 1065 TGTTCGC-CCCGGTGATTCT-GTTGTGGCTAATGTGTATCAGCGCCATCGGTGTTTACAA 1122
| || || ||| || | || | ||||| | || || ||| |||| ||||| |||||
Sbjct 669 TTTT-GCTCCCATTG-TGCTTGCA-TGGCTTCTCTGCATAAGCACCATTGGTGTATACAA 725
Query 1123 CATTTTCCATTGGAACCCGCATGTGTACCAAGCACTT-TCTCCTTATTACATGTACAAGT 1181
||| ||||||||||| || ||||| ||| ||||| || |||||||||||||| |||||||
Sbjct 726 CATCTTCCATTGGAATCCTCATGTTTACAAAGCA-TTGTCTCCTTATTACATCTACAAGT 784
Query 1182 TCCTCAAGAAAACTC--AAAGTAGAGGCTGGATGTCTCTTGGTGGTATC-TTACTCTGCA 1238
||||||||||||||| ||| | || ||||||||||| ||||| ||| || | ||||
Sbjct 785 TCCTCAAGAAAACTCGTAAAC--GCGGATGGATGTCTCTCGGTGGCATCCTTT-TATGCA 841
Query 1239 TTACAGGTTCCGAAGCAATGTTTGCGGATCTAGGACATTTTTCTCAACTCTCAAT-CAAG 1297
||||||| || ||||| |||||||| |||||||| || || |||| | ||||| || |
Sbjct 842 TTACAGGCTCGGAAGCTATGTTTGCTGATCTAGGCCACTTCACTCAGTTGTCAATACA-G 900
Query 1298 ATTGCTTTTACGT-CACTTGTTTACCCGTC-CTTGATACTCGCCTACATGGGACAAGCAG 1355
||||| || || | | || ||||||||||| || || || || |||||||| ||||| |
Sbjct 901 ATTGCATTCACATTCGCT-GTTTACCCGTCGCTA-ATCCTTGCATACATGGGTCAAGCCG 958
Query 1356 CTTATCTCTCTCAGCATCATATTATTGAAAGCGAATACAATATCGGGTTTTATGTATCGG 1415
| ||||| ||| |||| ||| | | || || || ||| || || |||||||| || |
Sbjct 959 CGTATCTATCTAAGCACCATGTCCTCGAGAGTGATTACCGGATTGGATTTTATGTTTCCG 1018
Query 1416 TACCAGA--AAGATTAAGATGGCCAGTTCTTGTG-A-TCGCTATACTCGCTGCTGTAGTT 1471
|||| || || || ||||||||||||| ||| | | | |||||| | || ||||| |||
Sbjct 1019 TACCCGAGCAA-AT-AAGATGGCCAGTT-TTG-GCAATTGCTATATTGGCGGCTGTTGTT 1074
Query 1472 GGAAGTCAAGCAATCATCACAGGAACATTCTCGATCATCAAACAATGCT-CTGCAT-TGG 1529
|||||||| ||||| |||||||||||||||||||||||||| ||||| | || | | | |
Sbjct 1075 GGAAGTCAGGCAATAATCACAGGAACATTCTCGATCATCAAGCAATG-TACTTC-TCTAG 1132
Query 1530 GATGCTTCCCTAAAGTGAAGATTGTTCATACGTCATCCAAAATCCACGGTCAGATTTACA 1589
| |||||||| ||||| || || || || || || || | ||| ||||||||||| || |
Sbjct 1133 GTTGCTTCCCAAAAGTCAAAATCGTACACACTTCGTCGAGAATGCACGGTCAGATATATA 1192
Query 1590 TCCCTGAGATCAATTGGA-TCTTGATGGTTCTCTGT--TTAGCTGTCACCATTGGCTTCA 1646
|||||||||||||||||| ||| ||| | || ||| ||||| |||||| |||| |||
Sbjct 1193 TCCCTGAGATCAATTGGACTCTC-ATGCT-CT-TGTGCTTAGCCGTCACCGTTGGATTCC 1249
Query 1647 GAGACACCAAGCGGTTGGGTAATGCTTCAGGATTGGCGGTTATAACTGTTATGCTGGTGA 1706
| |||||||| | | | ||||| ||||| ||||||||||| || ||||||||||| |
Sbjct 1250 GTGACACCAAACACATAAGCAATGCCTCAGGTTTGGCGGTTATTACCGTTATGCTGGTAA 1309
Query 1707 CAACATGCTTAATGTCACTAGTGATTGTACTT-TGCTGGCACAAGAG-TGTCATCTTTGC 1764
| || ||||| ||||| || || || || ||| ||||||||||| || | | ||| ||
Sbjct 1310 CGACTTGCTTGATGTCTCTGGTAATAGT-CTTATGCTGGCACAAAAGCTCCC-TCTACGC 1367
Query 1765 AATCGTATTCGTTGTATTCTTCGGCACAATCGAA-TCTCTCTACTTCTCTGCTTC-CTTA 1822
| | ||| || | || ||||| ||||| ||| | |||||||||||| ||||| || |
Sbjct 1368 GCTAGCCTTCATTTTCTTTTTCGGAACAATTGAAGT-TCTCTACTTCTCAGCTTCACTCA 1426
Query 1823 ATCAAATTCCTCGAAGGCGCATGGGTTCCAATCGCCCTCGCTTTT-TGCTTCCTTCTCG- 1880
|||||||||||||||| || ||||||||| |||||||| | || | |||||| |||
Sbjct 1427 -TCAAATTCCTCGAAGGTGCTTGGGTTCCAGTCGCCCTCTCCTTCAT-CTTCCTCCTCAT 1484
Query 1881 CGATGTGTAC-TT-GGCACTACGGAACACTCAAGCGCTATGAGTACGATGTGCAAAACAA 1938
| |||| || || |||||||||| || || ||||| || || | || || ||||||||
Sbjct 1485 C-ATGT--ACGTTTGGCACTACGGGACCCTTAAGCGTTACGAATTTGACGTCCAAAACAA 1541
Query 1939 AGTCTCGGTCAACTGGCTCCTCAG--TCTTAG--TC---AAACCCTCGGGATCG-CACGT 1990
|||||| ||||||||||||||| |||| | || ||||| |||| || | | ||
Sbjct 1542 AGTCTCAATCAACTGGCTCCTCACACTCTTCGGCTCTTCAAACC-TCGGAATTGTC-CGA 1599
Query 1991 GTCC-GTGGCCTTGGAC-TCATCCACACCGAGCTCGTCTCTGGTGTCCCCGCGATATTCT 2048
|||| | || | || | | ||| |||| ||||| |||||||| | || || || ||||
Sbjct 1600 GTCCAG-GGAATCGG-CGTGATCAACACTGAGCTTGTCTCTGGCATACCAGCTATCTTCT 1657
Query 2049 CTCATTTTGTCACCAACCTCCCTGCCTTCCACCAGGTTC-TCGTCTTCCTCTGTGTCAAA 2107
||||||| |||| |||||||| || || ||||| || | ||||||||||||| || |||
Sbjct 1658 CTCATTTCATCACTAACCTCCCGGCGTTTCACCAAGT-CGTCGTCTTCCTCTGCGTGAAA 1716
Query 2108 TCTGTTCCGGTTCCGCATGTTCGTCCTCAGGAACGGTTTCTAGTAGGACGCATCGGGCCA 2167
||||| || || |||||||| || ||||||||||||| || ||| | |||| ||
Sbjct 1717 TCTGTCCCCGTCCCGCATGTGAAACCGGAGGAACGGTTTCTCGTTGGAAGGGTCGGACCG 1776
Query 2168 AAAGAGTTCCG-CATATACCGTTGCATTGTCCGGT-TCGGGTACCGTGATGTCCACAAAG 2225
|| |||| ||| | | ||||| || || | ||||| | || ||||| ||||| |||||||
Sbjct 1777 AAGGAGTACCGGC-TCTACCGGTGTATAGCCCGGTAT-GGATACCGCGATGTACACAAAG 1834
Query 2226 ACGATTTCGAGTTTGA-AGGCGATCTTGTATGTAGCATTGCCGAGTTTATCCGT 2278
||||| |||||||||| | ||| || | || || || || ||||||||||||
Sbjct 1835 ACGATGTCGAGTTTGAGAA-CGACCTCATTTGCAGTATCGCGGAGTTTATCCGT 1887
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107909664085
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5