BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G70310.1 Length=1297 Score E Sequences producing significant alignments: (Bits) Value Ahg476155 jgi|Araly1|476155|fgenesh2_kg.2__1285__AT1G70310.1 1685 0.0 Ahg921438 jgi|Araly1|921438|scaffold_102719.1 952 0.0 > Ahg476155 jgi|Araly1|476155|fgenesh2_kg.2__1285__AT1G70310.1 Length=1167 Score = 1685 bits (912), Expect = 0.0 Identities = 1045/1109 (94%), Gaps = 9/1109 (1%) Strand=Plus/Plus Query 26 agagagagagagaCACTAAAACCCTAATCTCTTACTCACTGTCTCTCTTCTTCAATCCAT 85 ||| ||||| | ||||||||||||||| |||| |||||||||||||||| | |||||| Sbjct 1 AGATAGAGACACACACTAAAACCCTAACCTCTCACTCACTGTCTCTCTT-AGC-ATCCAT 58 Query 86 GTCTTCAACACAAGAAGCGTCTGTTACTGATTTGCCCGTGAAGAGACCTAGAGAAGCAGA 145 |||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||| Sbjct 59 GTCTTCAACACAAGAAGCTTCCGTTACTGATTTACCCGTGAAGAGACCTAGAGAAGCAGA 118 Query 146 GGAGGACAATAACGGCGGCGCCATGGAAACAGAGAACGGTGGAGGAGAGATAAAGGAGCC 205 ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| Sbjct 119 GGAGGACAATAACGGCGCCGCCATGGAAACAGAGAACGGTGGAGGAGAAATAAAGGAGCC 178 Query 206 TTCTTGTATGTCCTCTATTATTCCTGGATGGTTCTCTGAGATTAGTCCTATGTGGCCAGG 265 |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| Sbjct 179 TTCTTGTATGTCCTCTGTTATTCCTGGATGGTTCTCTGAGATCAGTCCTATGTGGCCAGG 238 Query 266 AGAAGCACATTCTCTCAAGGTAGAGAAGATTCTATTCCAAGGGAAATCAGATTACCAGGA 325 ||||||||||||||| || |||||||||||||| |||||||| ||||||||||| || || Sbjct 239 AGAAGCACATTCTCTGAAAGTAGAGAAGATTCTCTTCCAAGGAAAATCAGATTATCAAGA 298 Query 326 TGTTATTGTTTTCCAGTCTGCAACATATGGAAAGGTTTTGGTTTTGGATGGAGTGATTCA 385 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 299 TGTTATTGTTTTCCAGTCTGCAACATATGGAAAGGTTTTGGTTTTGGATGGAGTGATTCA 358 Query 386 ACTCACTGAGAGAGATGAATGTGCGTATCAAGAAATGATCACTCATCTTCCTTTGTGCTC 445 ||||||||| |||||||||||||||||||| |||||||||||||| ||||| |||||||| Sbjct 359 ACTCACTGAAAGAGATGAATGTGCGTATCAGGAAATGATCACTCACCTTCCCTTGTGCTC 418 Query 446 TATCTCCAACCCCAAAAAGGTACTGGTGATTGGAGGAGGAGATGGAGGAGTCCTGA-GGG 504 ||||||||||||||||||||| ||||| ||||||||||||||||||||||| || | ||| Sbjct 419 TATCTCCAACCCCAAAAAGGTCCTGGTTATTGGAGGAGGAGATGGAGGAGT-CTTACGGG 477 Query 505 AAGTGGCACGTCATAGTTCTGTTGAGCAGATTGACATTTGTGAAATAGATAAAATGGTGG 564 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 478 AAGTGGCACGTCATAGTTCTGTTGAGCAGATTGACATTTGTGAGATTGATAAAATGGTGG 537 Query 565 TTGATGTGGCTAAGCAGTATTTCCCTAATGTAGCAGTTGGATACGAGGATCCTCGTGTCA 624 |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 538 TTGATGTGGCTAAGCAGTTTTTCCCTAATGTAGCAGTTGGATACGAGGATTCTCGTGTCA 597 Query 625 ACCTCATCATTGGCGATGGTGTTGCTTTCTTGAAGAACGCTGCTGAAGGAACCTATGATG 684 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 598 ACCTCATCATTGGCGATGGTGTTGCTTTCTTGAAGAATGCTGCTGAAGGAACCTATGATG 657 Query 685 CAGTTATTGTTGATTCATCTGATCCAATCGGTCCAGCAAAAGAGCTATTTGAGAAACCTT 744 ||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||| Sbjct 658 CAGTTATTGTTGATTCATCGGATCCGATTGGTCCAGCAAAAGAGCTATTTGAGAAACCTT 717 Query 745 TCTTTGAGTCAGTGAATAGAGCTCTTCGTCCTGGTGGAGTTGTGTGCACACAAGCTGAAA 804 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 718 TCTTTGAGTCAGTGAATAGAGCTCTTCGTCCTGGTGGAGTTGTGTGCACACAAGCTGAAA 777 Query 805 GCTTGTGGCTTCACATGGATATCATTGAAGACATTGTTTCTAATTGCCGTGACATCTTTA 864 ||||||||||||||||||| ||||| |||||||||||||| ||||||||||| ||||||| Sbjct 778 GCTTGTGGCTTCACATGGACATCATCGAAGACATTGTTTCGAATTGCCGTGAGATCTTTA 837 Query 865 AAGGATCTGTTAACTACGCTTGGACCAGTGTTCCAACTTACCCGAGTGGAGTCATTGGAT 924 ||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||| Sbjct 838 AAGGATCTGTTAACTACGCTTGGACTAGCGTTCCAACTTACCCGAGCGGAGTCATTGGAT 897 Query 925 TCATGCTTTGTTC-ATCTGAAGGACCACAAGTCGATTTCAAGAAGCCAGTGAGTCTAATC 983 ||||||||||||| | ||||||||||||| ||||||||||||||||||||||||| |||| Sbjct 898 TCATGCTTTGTTCGA-CTGAAGGACCACATGTCGATTTCAAGAAGCCAGTGAGTCCAATC 956 Query 984 GATACTGATGAAAGCTCTATCAAATCACACTGT-CCCTTGAAGTATTACAACGCTGAGAT 1042 ||| | ||||||||||||| ||||||||| || |||||||||| ||||||||||||||| Sbjct 957 GATGCCGATGAAAGCTCTAGCAAATCACA-TGGACCCTTGAAGTTTTACAACGCTGAGAT 1015 Query 1043 TCACTCAGCTGCTTTCTGCTTGCCCTCTTTTGCTAAGAAGGTGATTGATTCGAAAGCCAA 1102 |||||| || ||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 1016 TCACTCTGCCGCTTTCTGCTTACCCTCTTTCGCTAAGAAGGTGATTGATTCGAAAGCCAA 1075 Query 1103 CTAGAAAAGAGAAGAGAAATCATTTGCTT 1131 ||||||| ||||||||||||| ||| ||| Sbjct 1076 CTAGAAA-GAGAAGAGAAATCGTTTACTT 1103 > Ahg921438 jgi|Araly1|921438|scaffold_102719.1 Length=1178 Score = 952 bits (515), Expect = 0.0 Identities = 819/964 (85%), Gaps = 27/964 (3%) Strand=Plus/Plus Query 166 CCATGGAAACAGAGAACGGTGGAGGAGAGATAAAGGAGCCTTCTTGTATGTCCTCTATTA 225 ||||||| || |||||||| || ||| | |||||||||| ||||| | ||| || | | Sbjct 226 CCATGGAGACGGAGAACGG-AGATCAGA-A-AAAGGAGCCTGCTTGTTTCTCCACTGTCA 282 Query 226 TTCCTGGATGGTTCTCTGAGATTAGTCCTATGTGGCCAGGAGAAGCACATTC-TCTCAAG 284 ||||||| ||||||||||| || |||||||||||||||||||||||||| || | | ||| Sbjct 283 TTCCTGGCTGGTTCTCTGAAATGAGTCCTATGTGGCCAGGAGAAGCACACTCAT-TGAAG 341 Query 285 GTAGAG-AAGATTCTATTCCAAGGGAAATCAGATTACCAGGATGTTATTGTTTTCCAGTC 343 || ||| ||| || | || ||||||||||||||||| || ||||| |||||||||||||| Sbjct 342 GTTGAGAAAG-TTTTGTTTCAAGGGAAATCAGATTATCAAGATGTGATTGTTTTCCAGTC 400 Query 344 TGCAACATATGGAAAGGTTTTGGTTTTGGATGGAGTGATTCAACTCACTGAGAGAGATGA 403 ||||||||||||||| |||||||||||||||||||| || ||||| || ||||||||||| Sbjct 401 TGCAACATATGGAAAAGTTTTGGTTTTGGATGGAGTAATCCAACTTACCGAGAGAGATGA 460 Query 404 ATGTGCGTATCAAGAAATGATCACTCATCTTCCTTTGTGCTCTATCTCC-AACCCCAAAA 462 |||||| |||||||||||||||||||||||||||||||||||||| ||| ||||| || | Sbjct 461 ATGTGCCTATCAAGAAATGATCACTCATCTTCCTTTGTGCTCTAT-TCCTAACCCTAAGA 519 Query 463 AGGTACT-GGTGATTGGAGGAGGAGATGGAGGAGTCCTGAGGGAAGTGGCACGTCATAG- 520 |||| || ||| |||||||||||||||||||| |||||| ||||||| ||||| ||| | Sbjct 520 AGGT-CTTGGTTATTGGAGGAGGAGATGGAGGTGTCCTGCGGGAAGTTGCACGCCAT-GC 577 Query 521 TTCTGTTGAGCAGATTGACATTTGTGAAATAGATAAAATGGTGGTTGATGTGGCTAAGCA 580 ||||||||||||||||||||| |||||||| |||||||||||||| || ||| ||||||| Sbjct 578 TTCTGTTGAGCAGATTGACATGTGTGAAATTGATAAAATGGTGGTCGACGTGTCTAAGCA 637 Query 581 GTATTTCCCTAATGTAGCAGTTGGATACGAGGATCCTCGTGTCAACCTCATCATTGGCGA 640 | ||||||| |||||||| ||||||||||||||||||| || ||||| |||||||||| Sbjct 638 ATTTTTCCCTGATGTAGCAATTGGATACGAGGATCCTCGCGTGAACCTTGTCATTGGCGA 697 Query 641 TGGTGTTGCTTTCTTGAAGAACGCTGCTGAAGGAACCTATGATGCAGTTATTGTTGATTC 700 ||||||||||||||||||||| |||||||||||| | || ||||| ||||||||||| || Sbjct 698 TGGTGTTGCTTTCTTGAAGAATGCTGCTGAAGGATCATACGATGCGGTTATTGTTGACTC 757 Query 701 ATCTGATCCAATCGGTCCAGCAAAAGAGCTATTTGAGAAACCTTTCTTTGAGTCAGTGAA 760 || |||||||||||||| ||||| ||||||||||||||||| ||||| | || ||| Sbjct 758 TTCAGATCCAATCGGTCCTGCAAAGGAGCTATTTGAGAAACCCTTCTTCCAATCCGTGGC 817 Query 761 TAGAGCTCTTCGTCCTGGTGGAGTTGTGTGCACACAAGCTGAAAGCTTGTGGCTTCACAT 820 ||||||||||||||||||||| |||||||| || || ||||||||||||||||||||||| Sbjct 818 TAGAGCTCTTCGTCCTGGTGGGGTTGTGTGTACTCAGGCTGAAAGCTTGTGGCTTCACAT 877 Query 821 GGATATCATTGAAGACATTGTTTCTAATTGCCGTGACATCTTTAAAGGATCTGTTAACTA 880 ||| ||||| |||||||||||| | || |||||||| ||||| || || ||||| ||||| Sbjct 878 GGACATCATCGAAGACATTGTTGCAAACTGCCGTGAGATCTTCAAGGGTTCTGTGAACTA 937 Query 881 CGCTTGGACCAGTGTTCCAACTTACCCGAGTGGAGTCATTGGATTCATGCTTTGTTC-AT 939 || |||||||| |||||||| ||||| ||||| || |||||||| ||||||||||| | Sbjct 938 TGCCTGGACCAGCGTTCCAACATACCCCAGTGGGGTTATTGGATTTATGCTTTGTTCTA- 996 Query 940 CTGAAGGACCACAAGTCGATTTCAAGA-AGCCAGTGAGTCTAATCGATACTGATGAAAGC 998 |||| ||||| | || || ||||| | | ||| ||| | ||| || | || || || Sbjct 997 CTGAGGGACCTGATGTTGACTTCAA-ACACCCACTGAACCCAATTGA--C-GA-GA--GC 1049 Query 999 TCTATCAAATCACACTGTCCCTT-GAAGTATTACAACGCTGAGATTCACTCAGCTGCTTT 1057 || | ||||||| | || |||| ||||| |||||| || |||||||| ||||| || || Sbjct 1050 TCAAGCAAATCAAA-TGGACCTTTGAAGTTTTACAATGCCGAGATTCATTCAGCCGCATT 1108 Query 1058 CTGCTTGCCCTCTTTTGCTAAGAAGGTGATTGATTCGAAAGCCAACTAGAAAAGAGAAGA 1117 ||||||||| ||||| || |||||||| ||||| || |||||||| | |||||||||| | Sbjct 1109 CTGCTTGCCTTCTTTCGCCAAGAAGGTAATTGAGTCAAAAGCCAATT-GAAAAGAGAA-A 1166 Query 1118 GAAA 1121 |||| Sbjct 1167 GAAA 1170 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48492350424 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5