BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70310.1
Length=1297
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476155 jgi|Araly1|476155|fgenesh2_kg.2__1285__AT1G70310.1 1685 0.0
Ahg921438 jgi|Araly1|921438|scaffold_102719.1 952 0.0
> Ahg476155 jgi|Araly1|476155|fgenesh2_kg.2__1285__AT1G70310.1
Length=1167
Score = 1685 bits (912), Expect = 0.0
Identities = 1045/1109 (94%), Gaps = 9/1109 (1%)
Strand=Plus/Plus
Query 26 agagagagagagaCACTAAAACCCTAATCTCTTACTCACTGTCTCTCTTCTTCAATCCAT 85
||| ||||| | ||||||||||||||| |||| |||||||||||||||| | ||||||
Sbjct 1 AGATAGAGACACACACTAAAACCCTAACCTCTCACTCACTGTCTCTCTT-AGC-ATCCAT 58
Query 86 GTCTTCAACACAAGAAGCGTCTGTTACTGATTTGCCCGTGAAGAGACCTAGAGAAGCAGA 145
|||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||
Sbjct 59 GTCTTCAACACAAGAAGCTTCCGTTACTGATTTACCCGTGAAGAGACCTAGAGAAGCAGA 118
Query 146 GGAGGACAATAACGGCGGCGCCATGGAAACAGAGAACGGTGGAGGAGAGATAAAGGAGCC 205
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 119 GGAGGACAATAACGGCGCCGCCATGGAAACAGAGAACGGTGGAGGAGAAATAAAGGAGCC 178
Query 206 TTCTTGTATGTCCTCTATTATTCCTGGATGGTTCTCTGAGATTAGTCCTATGTGGCCAGG 265
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 179 TTCTTGTATGTCCTCTGTTATTCCTGGATGGTTCTCTGAGATCAGTCCTATGTGGCCAGG 238
Query 266 AGAAGCACATTCTCTCAAGGTAGAGAAGATTCTATTCCAAGGGAAATCAGATTACCAGGA 325
||||||||||||||| || |||||||||||||| |||||||| ||||||||||| || ||
Sbjct 239 AGAAGCACATTCTCTGAAAGTAGAGAAGATTCTCTTCCAAGGAAAATCAGATTATCAAGA 298
Query 326 TGTTATTGTTTTCCAGTCTGCAACATATGGAAAGGTTTTGGTTTTGGATGGAGTGATTCA 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TGTTATTGTTTTCCAGTCTGCAACATATGGAAAGGTTTTGGTTTTGGATGGAGTGATTCA 358
Query 386 ACTCACTGAGAGAGATGAATGTGCGTATCAAGAAATGATCACTCATCTTCCTTTGTGCTC 445
||||||||| |||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 359 ACTCACTGAAAGAGATGAATGTGCGTATCAGGAAATGATCACTCACCTTCCCTTGTGCTC 418
Query 446 TATCTCCAACCCCAAAAAGGTACTGGTGATTGGAGGAGGAGATGGAGGAGTCCTGA-GGG 504
||||||||||||||||||||| ||||| ||||||||||||||||||||||| || | |||
Sbjct 419 TATCTCCAACCCCAAAAAGGTCCTGGTTATTGGAGGAGGAGATGGAGGAGT-CTTACGGG 477
Query 505 AAGTGGCACGTCATAGTTCTGTTGAGCAGATTGACATTTGTGAAATAGATAAAATGGTGG 564
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 478 AAGTGGCACGTCATAGTTCTGTTGAGCAGATTGACATTTGTGAGATTGATAAAATGGTGG 537
Query 565 TTGATGTGGCTAAGCAGTATTTCCCTAATGTAGCAGTTGGATACGAGGATCCTCGTGTCA 624
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 538 TTGATGTGGCTAAGCAGTTTTTCCCTAATGTAGCAGTTGGATACGAGGATTCTCGTGTCA 597
Query 625 ACCTCATCATTGGCGATGGTGTTGCTTTCTTGAAGAACGCTGCTGAAGGAACCTATGATG 684
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 598 ACCTCATCATTGGCGATGGTGTTGCTTTCTTGAAGAATGCTGCTGAAGGAACCTATGATG 657
Query 685 CAGTTATTGTTGATTCATCTGATCCAATCGGTCCAGCAAAAGAGCTATTTGAGAAACCTT 744
||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 658 CAGTTATTGTTGATTCATCGGATCCGATTGGTCCAGCAAAAGAGCTATTTGAGAAACCTT 717
Query 745 TCTTTGAGTCAGTGAATAGAGCTCTTCGTCCTGGTGGAGTTGTGTGCACACAAGCTGAAA 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TCTTTGAGTCAGTGAATAGAGCTCTTCGTCCTGGTGGAGTTGTGTGCACACAAGCTGAAA 777
Query 805 GCTTGTGGCTTCACATGGATATCATTGAAGACATTGTTTCTAATTGCCGTGACATCTTTA 864
||||||||||||||||||| ||||| |||||||||||||| ||||||||||| |||||||
Sbjct 778 GCTTGTGGCTTCACATGGACATCATCGAAGACATTGTTTCGAATTGCCGTGAGATCTTTA 837
Query 865 AAGGATCTGTTAACTACGCTTGGACCAGTGTTCCAACTTACCCGAGTGGAGTCATTGGAT 924
||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct 838 AAGGATCTGTTAACTACGCTTGGACTAGCGTTCCAACTTACCCGAGCGGAGTCATTGGAT 897
Query 925 TCATGCTTTGTTC-ATCTGAAGGACCACAAGTCGATTTCAAGAAGCCAGTGAGTCTAATC 983
||||||||||||| | ||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 898 TCATGCTTTGTTCGA-CTGAAGGACCACATGTCGATTTCAAGAAGCCAGTGAGTCCAATC 956
Query 984 GATACTGATGAAAGCTCTATCAAATCACACTGT-CCCTTGAAGTATTACAACGCTGAGAT 1042
||| | ||||||||||||| ||||||||| || |||||||||| |||||||||||||||
Sbjct 957 GATGCCGATGAAAGCTCTAGCAAATCACA-TGGACCCTTGAAGTTTTACAACGCTGAGAT 1015
Query 1043 TCACTCAGCTGCTTTCTGCTTGCCCTCTTTTGCTAAGAAGGTGATTGATTCGAAAGCCAA 1102
|||||| || ||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1016 TCACTCTGCCGCTTTCTGCTTACCCTCTTTCGCTAAGAAGGTGATTGATTCGAAAGCCAA 1075
Query 1103 CTAGAAAAGAGAAGAGAAATCATTTGCTT 1131
||||||| ||||||||||||| ||| |||
Sbjct 1076 CTAGAAA-GAGAAGAGAAATCGTTTACTT 1103
> Ahg921438 jgi|Araly1|921438|scaffold_102719.1
Length=1178
Score = 952 bits (515), Expect = 0.0
Identities = 819/964 (85%), Gaps = 27/964 (3%)
Strand=Plus/Plus
Query 166 CCATGGAAACAGAGAACGGTGGAGGAGAGATAAAGGAGCCTTCTTGTATGTCCTCTATTA 225
||||||| || |||||||| || ||| | |||||||||| ||||| | ||| || | |
Sbjct 226 CCATGGAGACGGAGAACGG-AGATCAGA-A-AAAGGAGCCTGCTTGTTTCTCCACTGTCA 282
Query 226 TTCCTGGATGGTTCTCTGAGATTAGTCCTATGTGGCCAGGAGAAGCACATTC-TCTCAAG 284
||||||| ||||||||||| || |||||||||||||||||||||||||| || | | |||
Sbjct 283 TTCCTGGCTGGTTCTCTGAAATGAGTCCTATGTGGCCAGGAGAAGCACACTCAT-TGAAG 341
Query 285 GTAGAG-AAGATTCTATTCCAAGGGAAATCAGATTACCAGGATGTTATTGTTTTCCAGTC 343
|| ||| ||| || | || ||||||||||||||||| || ||||| ||||||||||||||
Sbjct 342 GTTGAGAAAG-TTTTGTTTCAAGGGAAATCAGATTATCAAGATGTGATTGTTTTCCAGTC 400
Query 344 TGCAACATATGGAAAGGTTTTGGTTTTGGATGGAGTGATTCAACTCACTGAGAGAGATGA 403
||||||||||||||| |||||||||||||||||||| || ||||| || |||||||||||
Sbjct 401 TGCAACATATGGAAAAGTTTTGGTTTTGGATGGAGTAATCCAACTTACCGAGAGAGATGA 460
Query 404 ATGTGCGTATCAAGAAATGATCACTCATCTTCCTTTGTGCTCTATCTCC-AACCCCAAAA 462
|||||| |||||||||||||||||||||||||||||||||||||| ||| ||||| || |
Sbjct 461 ATGTGCCTATCAAGAAATGATCACTCATCTTCCTTTGTGCTCTAT-TCCTAACCCTAAGA 519
Query 463 AGGTACT-GGTGATTGGAGGAGGAGATGGAGGAGTCCTGAGGGAAGTGGCACGTCATAG- 520
|||| || ||| |||||||||||||||||||| |||||| ||||||| ||||| ||| |
Sbjct 520 AGGT-CTTGGTTATTGGAGGAGGAGATGGAGGTGTCCTGCGGGAAGTTGCACGCCAT-GC 577
Query 521 TTCTGTTGAGCAGATTGACATTTGTGAAATAGATAAAATGGTGGTTGATGTGGCTAAGCA 580
||||||||||||||||||||| |||||||| |||||||||||||| || ||| |||||||
Sbjct 578 TTCTGTTGAGCAGATTGACATGTGTGAAATTGATAAAATGGTGGTCGACGTGTCTAAGCA 637
Query 581 GTATTTCCCTAATGTAGCAGTTGGATACGAGGATCCTCGTGTCAACCTCATCATTGGCGA 640
| ||||||| |||||||| ||||||||||||||||||| || ||||| ||||||||||
Sbjct 638 ATTTTTCCCTGATGTAGCAATTGGATACGAGGATCCTCGCGTGAACCTTGTCATTGGCGA 697
Query 641 TGGTGTTGCTTTCTTGAAGAACGCTGCTGAAGGAACCTATGATGCAGTTATTGTTGATTC 700
||||||||||||||||||||| |||||||||||| | || ||||| ||||||||||| ||
Sbjct 698 TGGTGTTGCTTTCTTGAAGAATGCTGCTGAAGGATCATACGATGCGGTTATTGTTGACTC 757
Query 701 ATCTGATCCAATCGGTCCAGCAAAAGAGCTATTTGAGAAACCTTTCTTTGAGTCAGTGAA 760
|| |||||||||||||| ||||| ||||||||||||||||| ||||| | || |||
Sbjct 758 TTCAGATCCAATCGGTCCTGCAAAGGAGCTATTTGAGAAACCCTTCTTCCAATCCGTGGC 817
Query 761 TAGAGCTCTTCGTCCTGGTGGAGTTGTGTGCACACAAGCTGAAAGCTTGTGGCTTCACAT 820
||||||||||||||||||||| |||||||| || || |||||||||||||||||||||||
Sbjct 818 TAGAGCTCTTCGTCCTGGTGGGGTTGTGTGTACTCAGGCTGAAAGCTTGTGGCTTCACAT 877
Query 821 GGATATCATTGAAGACATTGTTTCTAATTGCCGTGACATCTTTAAAGGATCTGTTAACTA 880
||| ||||| |||||||||||| | || |||||||| ||||| || || ||||| |||||
Sbjct 878 GGACATCATCGAAGACATTGTTGCAAACTGCCGTGAGATCTTCAAGGGTTCTGTGAACTA 937
Query 881 CGCTTGGACCAGTGTTCCAACTTACCCGAGTGGAGTCATTGGATTCATGCTTTGTTC-AT 939
|| |||||||| |||||||| ||||| ||||| || |||||||| ||||||||||| |
Sbjct 938 TGCCTGGACCAGCGTTCCAACATACCCCAGTGGGGTTATTGGATTTATGCTTTGTTCTA- 996
Query 940 CTGAAGGACCACAAGTCGATTTCAAGA-AGCCAGTGAGTCTAATCGATACTGATGAAAGC 998
|||| ||||| | || || ||||| | | ||| ||| | ||| || | || || ||
Sbjct 997 CTGAGGGACCTGATGTTGACTTCAA-ACACCCACTGAACCCAATTGA--C-GA-GA--GC 1049
Query 999 TCTATCAAATCACACTGTCCCTT-GAAGTATTACAACGCTGAGATTCACTCAGCTGCTTT 1057
|| | ||||||| | || |||| ||||| |||||| || |||||||| ||||| || ||
Sbjct 1050 TCAAGCAAATCAAA-TGGACCTTTGAAGTTTTACAATGCCGAGATTCATTCAGCCGCATT 1108
Query 1058 CTGCTTGCCCTCTTTTGCTAAGAAGGTGATTGATTCGAAAGCCAACTAGAAAAGAGAAGA 1117
||||||||| ||||| || |||||||| ||||| || |||||||| | |||||||||| |
Sbjct 1109 CTGCTTGCCTTCTTTCGCCAAGAAGGTAATTGAGTCAAAAGCCAATT-GAAAAGAGAA-A 1166
Query 1118 GAAA 1121
||||
Sbjct 1167 GAAA 1170
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48492350424
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5