BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70330.1
Length=1623
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476156 jgi|Araly1|476156|fgenesh2_kg.2__1286__AT1G70330.1 2396 0.0
> Ahg476156 jgi|Araly1|476156|fgenesh2_kg.2__1286__AT1G70330.1
Length=1619
Score = 2396 bits (1297), Expect = 0.0
Identities = 1521/1626 (94%), Gaps = 27/1626 (2%)
Strand=Plus/Plus
Query 18 CCCATTAGTCAACGAATTTCCCAAAAATCCCCAAAACTGAGAGAAA-CTAAACAAATTCA 76
|||||||||||||||||||||||||||||||||||||||| | ||| |||| ||||||||
Sbjct 1 CCCATTAGTCAACGAATTTCCCAAAAATCCCCAAAACTGA-AAAAAGCTAACCAAATTCA 59
Query 77 AATGACCACCACCGATAAATCCGCCGGAATCGTAACTGACTCGGAAGCC-GGACCGGAGA 135
|||||||||| ||||||||||||||||||||||||||||||||||| || ||| ||||||
Sbjct 60 AATGACCACCGCCGATAAATCCGCCGGAATCGTAACTGACTCGGAA-CCAGGAACGGAGA 118
Query 136 CTTCTCTTCTCCTCAATCCTCACGAAGGATCTACCAAAAAAGCTCCTTC-TGATTCCTAC 194
||||||||||||||||||||||||||||||| |||| ||||| ||| || ||||||||||
Sbjct 119 CTTCTCTTCTCCTCAATCCTCACGAAGGATCCACCAGAAAAGATCC-TCATGATTCCTAC 177
Query 195 CACTTCGCTTACATCATCTACTTCACCCTCGGCGTTGGCTTTCTTCTTCCATGGAACGCA 254
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 178 CACTTCGCTTACATCATCTACTTCACCCTCGGTGTTGGCTTTCTTCTTCCATGGAACGCT 237
Query 255 TTCATCACCGCCGTCGATTACTTCTCTTACCTCTATCCTTCCACGGCCGTCGATCGGATC 314
||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||
Sbjct 238 TTCATCACCGCCGTCGACTACTTCTCTTACCTCTATCCTTCCACCGCCGTTGATCGGATC 297
Query 315 TTCGCCGTTATCTACATGCTCGTTGCTCTTGTTTGTCTATTCGTTATCGTTGTCTTCTAT 374
||||||||||||||||||||||| | |||||||||||||| | |||||||||||||||||
Sbjct 298 TTCGCCGTTATCTACATGCTCGTCGGTCTTGTTTGTCTATCCATTATCGTTGTCTTCTAT 357
Query 375 GCACATAAGAGCCTCGCTAGCTTTAGAATCAATCTCGGTCTTTTACTCTTCGTAATCGCC 434
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 358 GCACATAAGAGCCTCGCTAGCTTTAGAATCAATCTCGGCCTCTTACTCTTCGTAATCGCC 417
Query 435 TTGCTTGTGGTTCCTGTTTTGGATCTGGTTTATGTTAAAGGACAGGTCGGATTATACGCC 494
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 418 TTGCTTGTGGTTCCTGTTTTGGATCTGGTTTATGTTAAAGGACAGGTCGGTTTATCCGCC 477
Query 495 GGATTCGATGTTACTTCCGCCGCCGTTGC-CTTATCCGGTCTAGGTGATGCACTTATGCA 553
||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||
Sbjct 478 GGATTCGATGTTACTTCCGCCGCCGTTGCGCTT-TCCGGTCTCGGTGATGCACTTATGCA 536
Query 554 AGGAGGTCTTATCGGTGTTGCCGGTGAAATGCCGGAGAGGTATATGCAAGCTGTTGTCGC 613
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 537 GGGAGGTCTTATCGGTGTTGCCGGTGAAATGCCTGCGAGGTATATGCAAGCTGTTGTCGC 596
Query 614 CGGAACTGCTGGCTCCGGTGTTCTTGTGTCACTATTGAGAATTTTGACTAAAGCTGTGTA 673
||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||
Sbjct 597 CGGAACTGCTGGCTCCGGTGTTCTTGTTTCACTGTTGAGAATCTTGACTAAAGCTGTGTA 656
Query 674 TCCTCAAGATCCTGATGGTTTGAGAAAAAGTGCGAATCTATACTTTGCTGTGGGGATTGT 733
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 657 TCCTCAAGATCCTGATGGTTTGAGAAAAAGTGCGAATCTATACTTTGCTGTGGGAATTGT 716
Query 734 TGTTATGGTGATTTGTGCTGTGTTCTACAACGTAGCGCATAAGCTTCCGGTGATCAAGTT 793
|||||||||||| ||||||||| |||||||||| |||||||| |||||||||||||||||
Sbjct 717 TGTTATGGTGATCTGTGCTGTGCTCTACAACGTGGCGCATAAACTTCCGGTGATCAAGTT 776
Query 794 CCATGAGGAGCGTAAGAATGAAGAACTAATCAGAGAGAAGAGCGAAGAGAAAGGTTCTTT 853
||| || | ||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 777 CCACGAAGCGCGTAAGAATGAAGAACTAATTAGAGAGAAGAGTGAAGAGAAAGGTTCTTT 836
Query 854 AACCGGTTTAGCGTGGAGGACAACACTCTGGGATATCGTGACGAAAGTTAAATCTCATGG 913
|||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 837 AACCGGACTAGCGTGGAGGAAAACACTCTGGGAGATCGTGACGAAAGTTAAATCTCATGG 896
Query 914 TTTCGGGATTGTTCTC-TTATACATGGTGACATTGTCGATATTTCCTGGATACATTACTG 972
||||||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||
Sbjct 897 TTTCGGGATCATTCTCATT-TACATGGTGACATTGTCGATATTCCCTGGATACATTACTG 955
Query 973 AGGATGTTCATTCAGAGCTTCTTACAGATTGGTACCCTATTCTGCTTATTGCAGCGTACA 1032
||||||||||||| |||||||||| ||| ||||||||| | || || |||||||||||||
Sbjct 956 AGGATGTTCATTCCGAGCTTCTTAAAGACTGGTACCCTGTGCTACTCATTGCAGCGTACA 1015
Query 1033 ATGTGTTTGACTTGGTTGGTAAGTGTCTGACTGCTGTATTCATGCTGGAGGATGAGAAAA 1092
| ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1016 ACGTGTTTGACTTGGTTGGGAAGTGTCTGACCGCTGTTTTCATGCTGGAGGATGAGAAAA 1075
Query 1093 TCGCTGTTGGTGGTTCCATTGCTAGGCTCTTGTTTTACCCTCTCTTCTGGGGTTGCTTGC 1152
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 TCGCTGTTGGTGGTTGCATTGCTAGGCTCTTGTTTTACCCTCTCTTCTGGGGTTGCTTGC 1135
Query 1153 ACGGTCCGATGTTTCTCAGGACTGAGATTCCTGTAACTATACTGACATGCTTATTGGGAC 1212
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 ACGGTCCCATGTTTCTCAGGACTGAGATTCCTGTAACTATACTGACATGCTTATTGGGAC 1195
Query 1213 TTACCAACGGGTACTTGACAAGCGTCTTGATGATTCTGGCTCCAAAATCGGTTCCACTGA 1272
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1196 TTACCAACGGGTACTTGACAAGCGTCTTGATGATTCTGGCTCCAAAATCGGTTCCATTGA 1255
Query 1273 GACACTCGGAGACTGCAGGAATCGTCACTGTGATGTTCTTGGTTGTTGGTTTGGCCTCTG 1332
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1256 AACACTCAGAGACTGCAGGTATCGTCACTGTGATGTTCTTGGTTGTTGGTTTGGCCTTTG 1315
Query 1333 GATCTGTCATTGCTTGGTTCTGGGTCATTTGATTCTACCAAAGCTTTGTTATCTGTATTT 1392
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1316 GGTCTGTCATTGCTTGGTTCTGGGTCATTTGATTCTACCAAAGCTT-GTTATCTGTATTT 1374
Query 1393 GTTGAATTCTTTAAGCTT-CGACAAACTCAGCTTCATTAATCTGTGAATCATCCTGTGTG 1451
|||| ||||||||||||| ||||| ||||||||||||||||||| |||| |||||||||
Sbjct 1375 GTTGTATTCTTTAAGCTTTCGACAGACTCAGCTTCATTAATCTGGGAATTGTCCTGTGTG 1434
Query 1452 AATTGTTCGTTTTTCCTTCAGTAATATGTGAAAATTCTTCTTTCT----ACACCATGAAC 1507
||| |||| ||||| |||||||||||||||||||||||| ||| | ||||||| |||
Sbjct 1435 AATCGTTCATTTTTACTTCAGTAATATGTGAAAATTCTTTTTTTTTTTTACACCATAAAC 1494
Query 1508 ACAAAAGACTTATAAGCTGTAAAAGGCTACAACGT-GTATTCAGTGTTTCTCATT--G-T 1563
|||||||||||||||||||||||||| |||||||| | ||||||||||||||||| | |
Sbjct 1495 ACAAAAGACTTATAAGCTGTAAAAGGGTACAACGTTG-ATTCAGTGTTTCTCATTAAGGT 1553
Query 1564 AAGT---GGT--T-CAAGGATTCTTCAGTTTAATTCTGAGCTTTCTAGTGATCTTTGATG 1617
|||| ||| | ||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1554 AAGTTTAGGTGGTTCAAGGATTCTTCAATTTAATTCTGAGCTTTCGAGTGATCTTTGATG 1613
Query 1618 CTTTTG 1623
|||||
Sbjct 1614 TTTTTG 1619
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60830121265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5