BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70340.1
Length=2363
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908619 jgi|Araly1|908619|Al_scaffold_0002_1700 2279 0.0
Ahg476156 jgi|Araly1|476156|fgenesh2_kg.2__1286__AT1G70330.1 946 0.0
Ahg313236 jgi|Araly1|313236|fgenesh1_pm.C_scaffold_1002016 316 4e-85
> Ahg908619 jgi|Araly1|908619|Al_scaffold_0002_1700
Length=1530
Score = 2279 bits (1234), Expect = 0.0
Identities = 1443/1542 (94%), Gaps = 21/1542 (1%)
Strand=Plus/Plus
Query 225 ATGGCAGCTTTGGCACCTGGAATTCTTCAAAAGCTAATCCAAGGTATGAAAACAGGAATT 284
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAGCTTTAGCACCTGGAATTCTTCAAAAGCTAATCCAAGGTATGAAAACAGGAATC 60
Query 285 AAACCAACTAGAGAGCACCGAAGCTCTATGTTACAGGTCACAGATATCGTTCCCATTGAT 344
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| | |
Sbjct 61 AAACCAACTAGAGAGCACCGGAGCTCTATGTTACAGGTCACAGATATCGTCCCCATAGGT 120
Query 345 CTCGACGAGAAGTCTCTGGAGCCGAAACAAGGGTTTCTCATCAAAATCTCTGATTCCTCT 404
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 CTCGACGAGAAGTCTCTGGAGCCGAAACAAGGGTTTCTCATCAAAGTCTCTGATTCCTCT 180
Query 405 CACTCGATCTACGTCTCTCTCCCTTCGGATCAAGACGACGTCGTTCTCAGCAATAAGTTG 464
||||| ||||| ||||| || ||||| || ||||||||||||||||||||||||||| ||
Sbjct 181 CACTCAATCTATGTCTCACTTCCTTCAGACCAAGACGACGTCGTTCTCAGCAATAAGATG 240
Query 465 CAG-TTGGGTCAGTTTATCTACGTTGATCGGCTCGAACCTGGATCCCCTGTTCCTGTCAT 523
||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 241 CAGCTT-GGTCAGTTTATCTACGTCGATCGGCTCGAACCTGGATCCCCTGTTCCTGTCAT 299
Query 524 TAAAGGGGCAAAACCCATACCTGGCCGGCACCC-CTTGCTTGGGACGCCGGAGACATTGG 582
|||||| |||||||| || ||||| |||||||| | ||||||||||||||||| |||||
Sbjct 300 TAAAGGCGCAAAACCAATCCCTGGTCGGCACCCAC-TGCTTGGGACGCCGGAGCCATTGA 358
Query 583 TGGTTCCGAAAGAAAGAACTGATCAAGAGATTGGGTCGAAGCCTAGAAGAGGATCTTGGG 642
||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TGGGTCCGAAAGGAAGATCTGATCAAGAGATTGGGTCGAAGCCTAGAAGAGGATCTTGGG 418
Query 643 GACAAAACGTCGACTTTTCTTCGTCTCCGTTTGTTGTGAAACCAATGGCGTTGGAGTTTG 702
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 419 GACAAAACGTCGACGTTTCTTCGTCTCCGTTTGTTGTGAAACCAATGCCGTTGGATTTTG 478
Query 703 ACCATTCCACGCCGGCGAAGAGGTCTGTTTCAGCTAGATTTGCAGCGTCTCCGATCAGAA 762
| |||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 479 ATCATTCCACACCGGTGAAGAGGTCTGTTTCAGCTAGATTCGCAGCGTCTCCGATCAGAA 538
Query 763 GAGGTGGAGTGAGATGCTCTTTTGGTGGAGGGGTTTTGGGGAAATTGGAAGGAGAGAGTC 822
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 539 GAGGTGGAGTGAGATGCTCTTTTGGTGGAGGGGTTTTGGGGAAAATGGAAGGAGAGAGTC 598
Query 823 CGGCGACGGCGATGCTAAGGAAGAGTTGTTTTGTTTCGTCGGCTTCGAAGTTTCCGAGAA 882
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CGGCGACGGCGATGCTGAGGAAGAGTTGTTTTGTTTCGTCGGCTTCGAAGTTTCCGAGAA 658
Query 883 GTAGAAGTGTTTGTGACAGACAGGCCAAAAAGAACAATGCTTCTCTTTTTAGTCCCTTCA 942
|||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||
Sbjct 659 GTAGAAGTGTTTGTGACAGAGAGGCTAAAAGGAACAATGCTTCTCTTTTTAGTCCCTTCA 718
Query 943 AATCCTCTCTAGAGGCTCAAGAAGATGTTGTTCCCTTGTCTACCTCG------AAGAAGA 996
||| ||||||||||||||||||||||||||| ||||||||||||||| |||| ||
Sbjct 719 AATTCTCTCTAGAGGCTCAAGAAGATGTTGTCCCCTTGTCTACCTCGAAAACTAAGACGA 778
Query 997 TAAAACCCGAGAAAGATACCAATTTATCAGGAAGGCTCAACATACTAAGCAAGGAAGCAA 1056
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 779 GAAAACCCGAGAAAGATACCAATTTACCAGGAAGGCTCAACACACTAAGCAAGGAAGCAA 838
Query 1057 CTCAGCTTCGGGAGGTAGCTCAGAAAGTTGCCCTTCAGGCATTGCGAGAAGCTACAATCA 1116
|||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 839 CTCAGCTTCGAGAGGCAGCTCAGAAGGTTGCCCTTCAGGCATTGCGAGAAGCTACAATCA 898
Query 1117 CGGAAATTGTTGTTCGTCATAC-CAAGACGTTCACCAATCTGAGTAAATCAGCAAAAGCT 1175
|||||| ||| ||||||||| | |||||||||||||||||||| ||||||||||||||||
Sbjct 899 CGGAAACTGTCGTTCGTCAT-CTCAAGACGTTCACCAATCTGAATAAATCAGCAAAAGCT 957
Query 1176 GATTGCCCTGCGGTGTGCTTTGAGAAGTTCATGGAGTTTCACCAGCAGATGGCACAAACC 1235
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 GATTGCCCTGGGGTGTGCTTTGAGAAGTTCATGGAGTTTCACCAGCAGATGGCACAAACC 1017
Query 1236 ATTGGCGAACTCACTTCCATTGAAGTAGCTGCTACTCCAGATGCTGAGAACAAGTCACAG 1295
|||||||||||| |||||||||||| ||||||| | ||||||||||||||||||||||
Sbjct 1018 ATTGGCGAACTCGCTTCCATTGAAGCAGCTGCT--T-TAGATGCTGAGAACAAGTCACAG 1074
Query 1296 AACATAAACGCAAGAACCGAAAATCAGAAACCAACAGAAGAAGGGTCTTCTTCGATCCTG 1355
||||||||| |||||||||||||||||||||||| |||||||| | ||||||||||||||
Sbjct 1075 AACATAAACACAAGAACCGAAAATCAGAAACCAAGAGAAGAAGAGCCTTCTTCGATCCTG 1134
Query 1356 CATGAAATCGCTTATAATTCTATTGATCAGGAGAAAAGGAGATCAAAGAGACGGATTGTC 1415
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1135 CATGAAATCGCTTATAATTCTATTGATCAGGAGAAAAGGAGATCAAAGAGGCGGATTGTC 1194
Query 1416 CTGAAGCAGCAGAGCGAAGGGAAGACAGTGAGATCAAATGATGAGAACAAGAACCCAGCT 1475
||||||||||| || ||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 1195 CTGAAGCAGCA-AG--AAGGGAAGACATTGAGATCAAATGATGAGAACAAGAACCCAGTT 1251
Query 1476 TCTGGCGGTATAAGCAACACGATTAGGTTAGCAAAGGAGATCGAGGATGAAGCTGCAAAC 1535
| ||||| ||| |||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 1252 TGTGGCGAAATAGGCAACACGATTAGGTTGGCTAAGGAGATCGAGGAAGAAGCTGCAAAC 1311
Query 1536 TGGTTCATGGAGTTCATCGAAATAGCTCTGGAGAAAGGTATGAAGAAATCTAGAGGCCCT 1595
||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1312 TGGTTCATGGAGTTCGTCGAAATGGCTCTAGAGAAAGGTATGAAGAAATCTAGAGGCCCT 1371
Query 1596 GATGATGCAGACGTTAAGAAGGTTCCGCAATCTCTGATTCTCGGGGTTTTAAACTGGATT 1655
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1372 GATGATGCAGACGTTAAGAAAGTTCCGCAATCTCTGATTCTCGGGGTTTTGAACTGGATT 1431
Query 1656 GAAGTCGAACAGTCTGATAGCAACAACAACAAGAGACGCAGAGTCCATCCAAAAGCATCA 1715
||||| ||||||||| ||||||||||||| |||||| | ||||||||||||| |||||
Sbjct 1432 GAAGTTGAACAGTCTAATAGCAACAACAA---GAGACGTACAGTCCATCCAAAAACATCA 1488
Query 1716 AAGATCACTAGAAAGCTCAGAATTAAACTGAAGAATCCTTGA 1757
||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1489 AAGATCACTCGAAAGCTCAGAATTAAATTGAAGAATCCTTGA 1530
> Ahg476156 jgi|Araly1|476156|fgenesh2_kg.2__1286__AT1G70330.1
Length=1619
Score = 946 bits (512), Expect = 0.0
Identities = 623/674 (92%), Gaps = 17/674 (3%)
Strand=Plus/Minus
Query 1705 CAAAAGCATCAAAGATCACTAGAAAGCTCAGAATTAAACTGAAGAATCCTTG-A--ACC- 1760
||||| |||||||||||||| ||||||||||||||||| ||||||||||||| | |||
Sbjct 1619 CAAAAACATCAAAGATCACTCGAAAGCTCAGAATTAAATTGAAGAATCCTTGAACCACCT 1560
Query 1761 --ACTTA-C--AATGAGAAACACTGAATAC-ACGTTGTAGCCTTTTACAGCTTATAAGTC 1814
||||| | ||||||||||||||||| | |||||||| ||||||||||||||||||||
Sbjct 1559 AAACTTACCTTAATGAGAAACACTGAAT-CAACGTTGTACCCTTTTACAGCTTATAAGTC 1501
Query 1815 TTTTGTGTTCATGGTGT----AGAAAGAAGAATTTTCACATATTACTGAAGGAAAAACGA 1870
||||||||| ||||||| | ||| |||||||||||||||||||||||| ||||| ||
Sbjct 1500 TTTTGTGTTTATGGTGTAAAAAAAAAAAAGAATTTTCACATATTACTGAAGTAAAAATGA 1441
Query 1871 ACAATTCACACAGGATGATTCACAGATTAATGAAGCTGAGTTTGTCG-AAGCTTAAAGAA 1929
|| |||||||||||| |||| ||||||||||||||||||| ||||| ||||||||||||
Sbjct 1440 ACGATTCACACAGGACAATTCCCAGATTAATGAAGCTGAGTCTGTCGAAAGCTTAAAGAA 1381
Query 1930 TTCAACAAATACAGATAACAAAGCTTTGGTAGAATCAAATGACCCAGAACCAAGCAATGA 1989
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 TACAACAAATACAGATAAC-AAGCTTTGGTAGAATCAAATGACCCAGAACCAAGCAATGA 1322
Query 1990 CAGATCCAGAGGCCAAACCAACAACCAAGAACATCACAGTGACGATTCCTGCAGTCTCCG 2049
|||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1321 CAGACCCAAAGGCCAAACCAACAACCAAGAACATCACAGTGACGATACCTGCAGTCTCTG 1262
Query 2050 AGTGTCTCAGTGGAACCGATTTTGGAGCCAGAATCATCAAGACGCTTGTCAAGTACCCGT 2109
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 AGTGTTTCAATGGAACCGATTTTGGAGCCAGAATCATCAAGACGCTTGTCAAGTACCCGT 1202
Query 2110 TGGTAAGTCCCAATAAGCATGTCAGTATAGTTACAGGAATCTCAGTCCTGAGAAACATCG 2169
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1201 TGGTAAGTCCCAATAAGCATGTCAGTATAGTTACAGGAATCTCAGTCCTGAGAAACATGG 1142
Query 2170 GACCGTGCAAGCAACCCCAGAAGAGAGGGTAAAACAAGAGCCTAGCAATGGAACCACCAA 2229
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1141 GACCGTGCAAGCAACCCCAGAAGAGAGGGTAAAACAAGAGCCTAGCAATGCAACCACCAA 1082
Query 2230 CAGCGATTTTCTCATCCTCCAGCATGAATACAGCAGTCAGACACTTACCAACCAAGTCAA 2289
|||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 1081 CAGCGATTTTCTCATCCTCCAGCATGAAAACAGCGGTCAGACACTTCCCAACCAAGTCAA 1022
Query 2290 ACACATTGTACGCTGCAATAAGCAGAATAGGGTACCAATCTGTAAGAAGCTCTGAATGAA 2349
|||| |||||||||||||| || || | ||||||||| ||| |||||||||| |||||||
Sbjct 1021 ACACGTTGTACGCTGCAATGAGTAGCACAGGGTACCAGTCTTTAAGAAGCTCGGAATGAA 962
Query 2350 CATCCTCAGTAATG 2363
||||||||||||||
Sbjct 961 CATCCTCAGTAATG 948
> Ahg313236 jgi|Araly1|313236|fgenesh1_pm.C_scaffold_1002016
Length=1623
Score = 316 bits (171), Expect = 4e-85
Identities = 405/513 (79%), Gaps = 35/513 (7%)
Strand=Plus/Plus
Query 225 ATGGCAGCTTTGGCACCTGGAATTCTTCAAAAGCTAATCCAAGGTATGAAAACAGGAATT 284
||||| ||||| || || ||||| ||||||||||||||| | ||||||||||| ||| ||
Sbjct 1 ATGGCGGCTTTAGCCCCCGGAATCCTTCAAAAGCTAATCGACGGTATGAAAACCGGAGTT 60
Query 285 AAACCAACTAGAGAGCACCGAAGCTCTATGTTACAGGTCACAGATATCGTTCCCATTGAT 344
||||| || |||| ||| |||||||| | ||||| ||||| |||||||| ||| |||||
Sbjct 61 AAACCCACCGGAGAACACAGAAGCTCTTTATTACAAGTCACTGATATCGTCCCCGTTGAT 120
Query 345 CTCGACGAGAAG--TCTCTGGAGCCGAAACAAGGGTTTC-TCATCAAAA-TCTCTGATTC 400
|| ||||||||| ||| | | || |||||| || ||| |||| |||| ||||||||||
Sbjct 121 CTTGACGAGAAGAATCT-TATA-CCCAAACAA-GGCTTCTTCAT-AAAAGTCTCTGATTC 176
Query 401 CTCTCACTCGATCTACGTCT-CTCTCCCTTCGGATCAAGACGACGTCGTTCTCAGCAATA 459
||||| || |||||||| | ||| ||||| ||||||||||||| |||||||||||| |
Sbjct 177 TTCTCATTCAATCTACGT-TAGTCTTCCTTCTGATCAAGACGACGACGTTCTCAGCAACA 235
Query 460 AGTTGCAGTTGGGTCAGTTTATCTACGTTGATCGGCTCGAACC-TGGATCCCCTGTTCCT 518
|| ||||||| |||||||||||||||||||||||||| || || ||| | ||||||||
Sbjct 236 AGATGCAGTTAGGTCAGTTTATCTACGTTGATCGGCTTGATCCAGGGA-CACCTGTTCC- 293
Query 519 G-TCATTAAAGGGGCAAAACCCATACCTGGCCGGCACCCCTTGCTTGGGACGCCGGAGAC 577
| |||| ||||| || | ||| || || || || || || |||||||| || || ||| |
Sbjct 294 GATCATCAAAGGTGCTAGACCGATTCCGGGACGACATCCGTTGCTTGGAACTCCTGAGCC 353
Query 578 ATTGGTG-GTTCCGAA-A-GAAAGAACTGATCAAGAGAT-TGGGTCGAAG-CCTAGAAGA 632
|||| || | | | || | ||||| | ||| ||||| | |||| || || || ||||||
Sbjct 354 ATTGATGAG-TAC-AAGAGGAAAG-ATTGAGAAAGAG-TCTGGGACG-AGACCGAGAAGA 408
Query 633 GGATCTTGGGGACAAAAC-GTCGACTTTTCTTCGTCTCCGTTTGTTGTGAAA-CCAATG- 689
|| |||||||| |||||| || || | | |||||||| ||||| ||| ||| || ||
Sbjct 409 GGCTCTTGGGGTCAAAACGGT-GA--TGT-TTCGTCTCTGTTTG-TGTTAAAGCC--TGC 461
Query 690 -GCGTTGGAGTTTGACCATTCCACGCCGGCGAA 721
| ||||| ||||| || | |||||||||||
Sbjct 462 ACCTTTGGATTTTGATCAGTGTACGCCGGCGAA 494
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89016902565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5