BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70350.1
Length=568
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908621 jgi|Araly1|908621|Al_scaffold_0002_1702 505 2e-142
> Ahg908621 jgi|Araly1|908621|Al_scaffold_0002_1702
Length=318
Score = 505 bits (273), Expect = 2e-142
Identities = 303/318 (95%), Gaps = 0/318 (0%)
Strand=Plus/Plus
Query 24 ATGGCGGCCAACGGCGTGAGAAGAGCTCTTCAGGCATCGTCATCCTCCGGGAAGATACTC 83
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGCGGCCAACGGCGTGAGAAGAGCTCTTCAGGTATCGTCATCCTCCGGGAAGATACTA 60
Query 84 TTTGGTCGTTCATCAGCGGCAACTTCTGCTTCGAAGATCGGAAAATCAGCCGGAATTGCT 143
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 TTCGGTCGTTCATCAGCGGCAACTTCTTCTTCGAAGATCGGAAAATCAGCCGGAATTGCT 120
Query 144 TTCGGGAATGGATCATCTTCTTCAACTCGTCCCTCACTTCGTAGACTCACATTCTCCAGG 203
|| ||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||
Sbjct 121 TTTACGAATGGATCATCTTCTTCATCTCGTCCTTCACTTCGCAGACTCACATTCTCCAGG 180
Query 204 GTACCTGTGGAATTGAGTGCAGGGATTTCACTAATACCATTACATAGTGTTACTGCTTCA 263
|||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 181 GTACCTGTGGAAATGAGTGCAGGGGTTTCACTTATACCATTACATAGTGTTACTGCTTCA 240
Query 264 GCTTTGCTCACTTCATTGCTATCTCTGAGCAATCAAAACTGGAGTTGCTTATCAGAAGGA 323
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 241 GCTTTGCTCACTTCATTGCTATCTCTCAGCAATCAAAACTGGAGTTGCTTATCCGAAGGA 300
Query 324 TTTGCTTCAACACTATAA 341
||||||||||||||||||
Sbjct 301 TTTGCTTCAACACTATAA 318
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20756640416
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5