BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70360.1
Length=525
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908622 jgi|Araly1|908622|Al_scaffold_0002_1703 665 0.0
> Ahg908622 jgi|Araly1|908622|Al_scaffold_0002_1703
Length=564
Score = 665 bits (360), Expect = 0.0
Identities = 490/548 (89%), Gaps = 27/548 (5%)
Strand=Plus/Plus
Query 1 ATGGAGGAATCTGGTGACACTTGTGAATTGACGATTGTGATCATGACTGTTCATGCTGTT 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 ATGGAGGAATCTGGTGACACTTGTGAATTGACGATTGTGGTCATGACTGTTCATGCTGTT 60
Query 61 ATGTTAGAATCTGGATTTGTGTTGTTTGATCCTGATTCATCTATGCGTTTTAGCTTCTCG 120
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 61 ATGTTAGAATCTGGATTTGTGCTGTTCGATCCTGATTCATCTATGCGTTTTAGCTTCTCG 120
Query 121 AAGAAGACTTTGGTATCGCTTAACTATACTCTACCTTCTGTGAAAGGAATAGTCGGTTTG 180
|| ||||||||||||||||||||||||||||| ||||||||||||||||||| || ||
Sbjct 121 GAGGAGACTTTGGTATCGCTTAACTATACTCTAGCTTCTGTGAAAGGAATAGTAAGTGTG 180
Query 181 AATTTTGAG-A---AGGAGGCGA---T-T-G--T-T-GG-----TA------GT--TTT- 213
||||||||| | ||||||||| | | | | | || || || |||
Sbjct 181 AATTTTGAGAACTTAGGAGGCGATGTTGTAGTTTATGGGTCTCTTAGTGCGGGTAGTTTG 240
Query 214 GTTCGTGTGGTGTCTATTGATAAACGTAGCTATGTGCACATTGTTGATTTACTTATGGAA 273
||| || |||||||||||||||||||||| | |||||||||||||||||| ||||||||
Sbjct 241 GTTGGTATGGTGTCTATTGATAAACGTAGATCTGTGCACATTGTTGATTTGCTTATGGAC 300
Query 274 ACTTTGAAATCTGATGAAGAAGAAGATACTTTGAGCATTGACTGTAAGGTACTCGTGTGG 333
|||| ||||||||| |||||||||||||||||||||| || || ||||||||||||||
Sbjct 301 ACTTCGAAATCTGACAAAGAAGAAGATACTTTGAGCATCCACCGTGAGGTACTCGTGTGG 360
Query 334 TGGAGAATGATAAAAGATGGTATTGTTACGCCTCTGTTGGTTGATCTTTGCTACAAAACT 393
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 361 TGGAGAATGATAAAAGATGGTATTGTTACGCCTCTGTTGGTTAATCTTTGCTACAAAACT 420
Query 394 GGGTTAGAACTTCCACCTTGCTTTATCAGTCTACCTCGAGAGCTAAAACACAAGATACTA 453
|| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 421 GGCTTAGAACTTCCATCTTGCTTTATCCGTCTACCTCGAGAGCTAAAACACAAGATACTA 480
Query 454 GAGTCGCTTCCCGGTGTGGATATTGGGACATTGGCTTGTGTTTCTTCTGAACTGCGAGAC 513
|||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||
Sbjct 481 GAGTCGCTTCCCGGTGTGGACATTGCCACATTGGCCTGTGTTTCTTCTGAACTGCGAGAC 540
Query 514 ATGGCTTC 521
|||||||
Sbjct 541 CTGGCTTC 548
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19115950089
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5