BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70370.1
Length=2352
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926353 jgi|Araly1|926353|scaffold_201914.1 2981 0.0
Ahg472637 jgi|Araly1|472637|fgenesh2_kg.1__2591__AT1G23760.1 1002 0.0
> Ahg926353 jgi|Araly1|926353|scaffold_201914.1
Length=1921
Score = 2981 bits (1614), Expect = 0.0
Identities = 1808/1903 (95%), Gaps = 7/1903 (0%)
Strand=Plus/Plus
Query 176 AGAAG-AAGAACAAAAATGCTCAAACAGTTTCTTCTTCTCCAATCCTTCTCCTTCTTCCT 234
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5 AGAAGAAAGAACAAAAATGCTCAAACAGTTTCTTCTTCTCCAATCCTTCTCCTTCTTCCT 64
Query 235 CTTCAATGTAGTTATCGTCGGAGG-AAGAACATTCGGCGGCGGTTTCTCAGCGGAGGAGA 293
||||||||| |||||||||||||| ||| | |||||||||||||||||||||||||||
Sbjct 65 CTTCAATGTTGTTATCGTCGGAGGAAAG-TTAATCGGCGGCGGTTTCTCAGCGGAGGAGA 123
Query 294 ATCCATTTACTCCAAAAGCATCTCTAGTTCGTTACTGGAACAAAGAGATTCGTGGCCAAT 353
||||||||||||||||||||||| | ||||||||||||||||||||||| ||||| |||
Sbjct 124 ATCCATTTACTCCAAAAGCATCTTTGGTTCGTTACTGGAACAAAGAGATCCGTGGAGAAT 183
Query 354 CTCCCAGATCGGAGTTTTTAATCTCAAAAGCTTCACCACTCAACGCCGTAGACTCAGCAA 413
||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||
Sbjct 184 CTCCCAGATCGGAGTTTTTAATCTCTAAAGCGTCGCCACTCAACGCCGTAGACTCAGCAA 243
Query 414 CTTTCTCAAAACTCGCCGCCGCGAACTCGCTGCCGACTCGTTTTCCCGATTTCTGCTCCG 473
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 244 CTTTCTCAAAACTCGCCGCCGCGAACTCGCTCCCGACTCGTTTTCCTGATTTCTGCTCCG 303
Query 474 CCGCGAATCTCTTCTGTTTTCCTGATTTAGGAGCGAGTCTCGAGAAACACGACGACGACG 533
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 304 TCGCGAATCTCTTCTGTTTTCCCGATTTAGGAGCGAGTCTCGAGAAACACGACGACGACG 363
Query 534 TTAAATTCTCCGTTTATGACCAGAAGAACTTCACTAACTACGGCAATGCTCGTGCCGGAG 593
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 TTAAATTCTCTGTCTATGACCAGAAGAACTTCACTAACTACGGCAATGCTCGTGCCGGAG 423
Query 594 GAGCAGATTCGTTCAAAAACTACTCGAA-AGACGGTAATGTCGTAACCGATTCGTTCCGG 652
||||||||||||||||||||||||| || |||||| ||||| ||||||||||||||||||
Sbjct 424 GAGCAGATTCGTTCAAAAACTACTC-AAGAGACGGCAATGTTGTAACCGATTCGTTCCGG 482
Query 653 AGATACAGCCGTAACGCGGCGGGTCACGACGATAAATTCACTGTCTACGGTGAAAACAGT 712
|| ||||| |||||||||||||||||||||||||||||||| || ||||| || ||||||
Sbjct 483 AGGTACAGTCGTAACGCGGCGGGTCACGACGATAAATTCACCGTGTACGGCGATAACAGT 542
Query 713 AACGTGGTAGAGGAAGGATTCAATTCATACGGAACATTCGGAACCGGCGGCGCCGGAGAT 772
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 543 AACGTCGTCGAGGAAGGATTCAATTCATACGGAACATTCGGAACCGGCGGCGCCGGAGTT 602
Query 773 TTCACTAACTACCAAAACAACGTGAACAATCCAACGAGTCGATTCACGGCGTATTCCGAC 832
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 603 TTCACTAACTACCAAAACAACGTGAACAATCCGACGAGTCGATTCACGGCGTATTCTGAC 662
Query 833 GGAGGTAACGGTCGATCTCAAACATTCAAAACCTACACACACGAAGCTAACGCCGGTAAC 892
||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 663 GGAGGAAACGGTCGATCTCAATCATTCAAAACCTACACACACGACGCTAACGCCGGTAAC 722
Query 893 GGTCAATCATTCACAAGCTACGGCAAAAACGGAAACGGAGTTCCTAACGAGTTCACTTCT 952
|||||||| ||| | ||||||||||||||||||||||||| ||| ||||| ||| |||||
Sbjct 723 GGTCAATCGTTCTCCAGCTACGGCAAAAACGGAAACGGAGCTCCGAACGAATTCGCTTCT 782
Query 953 TACGGCGTCTCCTCCAATGTAATCGGCTCCGGTTTCTCTAACTACGGCGAGAGTGGAAAC 1012
||||||| ||||||||| || ||||||||||||||||| || ||||||||||||||||||
Sbjct 783 TACGGCGCCTCCTCCAACGTTATCGGCTCCGGTTTCTCAAATTACGGCGAGAGTGGAAAC 842
Query 1013 GCGGCGAACGATACCTTCACAAGCTACGGAAGCGACGGTAATGTACCTCAGAACAATTTT 1072
|| || ||||||||||||||||||||||||| |||| |||||||||| |||||||||||
Sbjct 843 GCCGCCAACGATACCTTCACAAGCTACGGAACCGACAGTAATGTACCGCAGAACAATTTC 902
Query 1073 AATAACTACGGTGCTTCCGGTAACGCCGCCGTGGATACCTTCGCGAATTACAGAGACAAG 1132
|| |||||||| || || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 903 AAAAACTACGGCGCCTCTGGTAACGCCGCCGTGGACACCTTCGCGAATTACAGAGACAAA 962
Query 1133 GCCAACGTCGGAGACGATTCGTTCTCATCCTATGCGAAAGATTCGAATTCGGAGAAGGTT 1192
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 963 GCCAACGTCGGAGACGATTCGTTCTCTTCCTATGCCAAAGATTCGAATTCGGAGAAGGTC 1022
Query 1193 AATTTCGTAAATTACGGTCAATCTTTCAATCCCGGTTCAGAAACTTTCACCGGTTATGGC 1252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 AATTTCGTAAATTACGGTCAATCTTTCAATCCCGGTTCAGAAACTTTCACCGGTTATGGC 1082
Query 1253 AAAGGAGCTGAAGGAAGCAAACTCAGCTTCAAAACCTATACACCAAACTCTACTTTCAAG 1312
|||||||||||||||| |||| |||| ||||||||||||||||| ||||| ||||||||
Sbjct 1083 AAAGGAGCTGAAGGAAACAAAATCAGTTTCAAAACCTATACACCGAACTCAACTTTCAAA 1142
Query 1313 GACTACGCCAAAAAGGGCGTCGCTTTTGCTAAATACAACGTTTCAACAACCACCGCGAAC 1372
|||||| ||||||| ||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 1143 GACTACACCAAAAACGGCGTCGCTTTTGCTAAATACAACGCTTCAACCACCACCGCGAAC 1202
Query 1373 ACCGTCGGCGATGGCAAAACCGTAAATAAATGGATCGAACCGGGTAAATTCTTTAGAGAA 1432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 ACCGTCGGCGATGGCAAAACCGTAAATAAATGGATCGAACCGGGTAAATTCTTTAGAGAA 1262
Query 1433 TCGTCGCTTAAAGAAGGTACAGTGATTCCTATGCCTGATATTAAAGATAAAATGCCTAAA 1492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1263 TCGTCGCTTAAAGAAGGTACAGTGATTCCTATGCCTGATATTAAAGATAAAATGCCTAAA 1322
Query 1493 AGGTCGTTTTTACCCCGGAGTATAATTACGAAACTACCCTTCTCTACTTCTAAACTCGGT 1552
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1323 AGGTCGTTTTTACCCCGGAGTATAATTACGAAACTACCCTTCTCCACTTCAAAACTCGGA 1382
Query 1553 GAGATTAAGAGAATCTTCCACGCCGTTGAGAATTCGACGATGGGA-GGTATAATCACCGA 1611
||||||||||||||||||||||||| |||||| |||||||| ||| ||||||||||||||
Sbjct 1383 GAGATTAAGAGAATCTTCCACGCCGGTGAGAACTCGACGAT-GGATGGTATAATCACCGA 1441
Query 1612 CGCAGTGACGGAGTGCGAGAGGCCACCGAGCGTCGGAGAGACGAAACGGTGCGTAGGATC 1671
||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct 1442 CGCCGTGACGGAGTGCGAGAGACCACCGAGCGTCGGAGAGACAAAACGGTGCGTCGGATC 1501
Query 1672 AGCGGAGGATATGATCGATTTCGCGACGTCGGTGTTAGGTCGTAGCGTGGTGCTTAGAAC 1731
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1502 GGCGGAGGACATGATCGATTTCGCGACGTCGGTGTTAGGTCGTAGCGTGGTGCTTCGAAC 1561
Query 1732 AACGGAGAACGTAGCCGGGTCAAAGGAAAAGGTAGTGATCGGGAAAGTCAACGGAATCAA 1791
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1562 AACGGAGAATGTAGCCGGGTCAAAGCAAAAGGTAGTGATCGGGAAAGTCAACGGAATCAA 1621
Query 1792 CGGTGGGAAATTAACGAAAGCTGTGTCGTGTCATCAGAGTTTGTACCCGTATCTATTGTA 1851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1622 CGGTGGGAAATTAACGAAAGCTGTGTCGTGTCATCAGAGTTTGTACCCGTATCTATTGTA 1681
Query 1852 TTACTGCCACTCCGTACCAAAGGTTCGGGTATACGAAGCTGATCTTCTAGAGTTGAATAG 1911
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1682 TTACTGTCACTCCGTACCTAAGGTTCGGGTATACGAAGCTGATCTTCTAGAGTTGAATAG 1741
Query 1912 TAAGAAGAAGATTAACCACGGGATTGCCATCTGTCACATGGACACGTCATCATGGGGTCC 1971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1742 TAAGAAGAAGATTAACCACGGGATTGCCATCTGTCACATGGACACGTCATCATGGGGTCC 1801
Query 1972 GAGTCATGGAGCTTTCTTAGCTCTCGGGTCAAAACCGGGTCGGATCGAAGTTTGTCACTG 2031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1802 GAGTCATGGAGCTTTCTTAGCTCTCGGGTCAAAACCGGGTCGGATCGAAGTTTGTCACTG 1861
Query 2032 GATATTTGAGAACGACATGAACTGGGCTATCGCTGATTAGACC 2074
|||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1862 GATATTTGAGAACGACATGAACTGGGCTATTGCTGATTAGACC 1904
> Ahg472637 jgi|Araly1|472637|fgenesh2_kg.1__2591__AT1G23760.1
Length=1990
Score = 1002 bits (542), Expect = 0.0
Identities = 1490/1938 (77%), Gaps = 104/1938 (5%)
Strand=Plus/Plus
Query 184 AACAAAAATGCTCAAACAGTTTCT-TC-TTCTCCAATCCTTCTCCT-TCTTCCTCTTCAA 240
|||||||||||||||| | ||| | || |||||| | |||||| | | | |||||| |
Sbjct 30 AACAAAAATGCTCAAA-AATTT-TGTCTTTCTCCTACCCTTCTTGTCGCGT-CTCTTCCA 86
Query 241 TGTAGTTATCGTCGGAGGAAGAAC-ATT--C-GGCGGCGGTTTCTCAG-CGGAGGA-GAA 294
||||||||| | |||||| ||||| || | ||||||||| || | |||| || |||
Sbjct 87 TGTAGTTATGGCCGGAGG-AGAACGGTTAACTAACGGCGGTTTTTC-GCCGGA-GATGAA 143
Query 295 TCCATTTACTCCAAAAGCATCTCTAGTTCGTTACTGGAACAAAGAGATTCGTGGCCAATC 354
||| || || || ||||||||| |||| ||||||||||||||| |||| | ||||||
Sbjct 144 TCCGTTCACACCCAAAGCATCTTTAGTACGTTACTGGAACAAACAGATCCAACACCAATC 203
Query 355 TCCCA-GATCGGAGTTTTTAATCTCAAAAGCTTCACCACTCAACGCCGTAGACTCAGCAA 413
||| | || | ||| | |||| || ||||||||||| | ||| || | ||| || |
Sbjct 204 -ACCAGGCTCAGCCTTTCTCCTCTCCAAGGCTTCACCACTTACCGCTGTCGCCTCCGCCA 262
Query 414 CTTTCTCAAAACTCGCCGCCGCGAACTCGCTGCC-GACTCGTTTTCCCGA-TTTCTGCTC 471
||||| ||||||||||| | | ||| | || || || ||| | || || ||| |||||
Sbjct 263 CTTTCGCAAAACTCGCCTCTGAAAACGCTCTTCCGGA-TCGCCTACCGGACTTT-TGCTC 320
Query 472 CGCCGCGAATCTCTTCTGTTTTCCTGATTTAGGAGCGAGTCTCGAGAAACACGA-CGACG 530
||| || || |||||||||||||| |||||||| | | |||||||||||| | | |||
Sbjct 321 CGCGGCAAACCTCTTCTGTTTTCCAGATTTAGGTCCAACCCTCGAGAAACAC-AGCAACG 379
Query 531 ACGTTAAATTCTCCGTTTATGACCAGAAG-AACTTCACTAACTACGGC--AATG-CTCGT 586
||||||||||||| |||||||| || | | |||||||| ||||||||| | | ||
Sbjct 380 ACGTTAAATTCTCTGTTTATGATCA-ACGAAACTTCACCAACTACGGCGGCACGATTCAC 438
Query 587 GCCGGAGGAGCAGATTCGTTCAA-AAACTACTCGA-AAGACGGTAATGTCGTAACCGATT 644
|||| || || ||||||||||| ||| || || | || |||| || || |||||||| |
Sbjct 439 CCCGGCGGTGCTGATTCGTTCAAGAAA-TATTC-ACAAAACGGCAACGTAGTAACCGACT 496
Query 645 CGTTCCGGAGATACAGCCGTAACGCGGCGGGTCACGACGATAAATTCACTGTCTACGGTG 704
| |||||| ||||||||||| |||| || |||||||| ||||| ||||| | ||||| |
Sbjct 497 CTTTCCGGCGATACAGCCGTGACGCCGCCGGTCACGAAGATAAGTTCACAGGCTACGCCG 556
Query 705 AAAACAGTAACGTGGTAGAGGAAGGA-TTCAATTCATACGGAACATTC-GGAACCGGCGG 762
| ||||| ||||| || |||||| | || ||||| ||||| || || | ||||| ||
Sbjct 557 ATAACAGCAACGTCGTTGAGGAA-AACTTTAATTCTTACGGCAC-GTCAGCCACCGGTGG 614
Query 763 CGCCGGAGATTTCACTAACTACCAAAACAACGTGAACAATCCAACGAGTCGATTCACGGC 822
| |||| ||||| | ||||| ||| | || |||||||| || ||||| |||| |||
Sbjct 615 CTCCGGCGATTTTAAAAACTATCAATCCGGTGTCAACAATCCGACTAGTCGTTTCAAGGC 674
Query 823 GTATTCCGACGGA-GGTAACGGTCGATCTCAAACATTCAAAACCTACACACACGAAGCTA 881
||||||||| || || ||||| || |||| || || || ||||| || |||||||| |
Sbjct 675 TTATTCCGAC-GACGGAAACGGCCGGGCTCAGACGTTTAAGACCTATACTCACGAAGCCA 733
Query 882 ACGCCGGTAAC-GGTCAATCATTCACAAGCTACGGCAAAAACGGAAACGGAGTTCCTAAC 940
||||||| | | |||||||| ||||| || || ||||||||||| ||||||| ||| |||
Sbjct 734 ACGCCGG-ACCGGGTCAATCTTTCACCAGTTATGGCAAAAACGGTAACGGAGCTCCGAAC 792
Query 941 GAGTTCACTTCTTACGGCGTCTCCTCCAATGTAATCGGCTCCGG-TTTCTCTAACTACGG 999
|||||| ||||||||||||||||||| || || ||||| | ||| |||||| ||||||||
Sbjct 793 GAGTTCTCTTCTTACGGCGTCTCCTCTAACGTTATCGGAT-CGGATTTCTCAAACTACGG 851
Query 1000 CGAGAGTGGAAACGCGGCGAACGATACCTTCACAA-GCTACGGAAGCGACGGTAATGTAC 1058
||||| | ||||| || ||||| || |||| || ||||||| ||||||||||||| |
Sbjct 852 CGAGAACAGTAACGCAGCCAACGACACTTTCA-AAGGCTACGGTGGCGACGGTAATGTTC 910
Query 1059 CTCAGAACAATTTTAATAA-CTACGGTGCTTCCGGTAACGCCGCCGTGGATACCTTCGCG 1117
||| ||| || || || || ||||||||| || || || |||||||| || || ||| |
Sbjct 911 CTCGGAATAACTTCAA-AAGCTACGGTGCCTCTGGGAATGCCGCCGTTGACACATTCTTG 969
Query 1118 AATTACAGAGACAAGGCCAACGTCGGAGACGATTCGTTCT-CATCCTATGCGAAAG-ATT 1175
||||| ||||||||||| ||||| || ||||||||||| | | || ||||| ||| | |
Sbjct 970 AATTATAGAGACAAGGCTAACGTTGGGGACGATTCGTT-TGCGTCGTATGC-CAAGAACT 1027
Query 1176 CGAA-TTCGGAGAAGGTTAATTTCGTAAATTACGGTC-AATCT-TTCAATCCCGGTTCAG 1232
| || ||| |||||||| | ||||| |||||||| | ||||| || ||||||||||| |
Sbjct 1028 CAAACTTC-GAGAAGGTCGACTTCGTGAATTACGG-CAAATCTATT-AATCCCGGTTCGG 1084
Query 1233 AAAC-TTTCACCGGTTATGGCAAAGGAGCTGAAGGAAGCAAACTCAGCTTCAAAACCTAT 1291
|| | ||| ||||||||||| ||||||||||| |||| |||| | | |||||||| |||
Sbjct 1085 AATCATTT-ACCGGTTATGGTAAAGGAGCTGAGGGAAACAAAATTGGTTTCAAAACGTAT 1143
Query 1292 ACACCA-AACTCTACTTTCAAGGACTACGCCAAAAAGGGCGTCGCTTTTGCTAAATACAA 1350
|| || ||||| || |||||||||||||| |||| || |||| ||||| |||| |
Sbjct 1144 AC-TCAGAACTCAACCTTCAAGGACTACGCGAAAACCGGAGTCGAATTTGCGAAAT---A 1199
Query 1351 CGTTTCAACAACCACCGCGAACACCGTCGGCGATGGCAAAACCGTAAATAAATGGATCGA 1410
| || || | | | | | |||| | ||||||||| || ||||| ||| | ||
Sbjct 1200 ----T----AATCA--GAGTAGA-C-TCGGTGGTGGCAAAACTGTGAATAAGTGGGTGGA 1247
Query 1411 ACCGGGTAAATTCTTTAGAGAATCGTC-GCTTAAAGAAGGTACAGTGATTCCTATGCCTG 1469
|| || || ||||||||||||||| | |||||||||| || || ||||| |||||||
Sbjct 1248 GCCTGGCAAGTTCTTTAGAGAATCG-CTGCTTAAAGAAAGTTCATTGATTTGGATGCCTG 1306
Query 1470 ATATTAAAGATAAAATGCCTAAAAGGTCGTTTTTACCCCGGAGTATAAT-TACGAAACTA 1528
| ||||||||||||||||| |||||||||||| | || || | || | | ||||||||
Sbjct 1307 ACATTAAAGATAAAATGCCGAAAAGGTCGTTTCTGCCTCGTAACATTGTCT-CGAAACTA 1365
Query 1529 CCCTTCTCTACTTCTAAACTCG-GTGAGATTAAGAGAATCTTCCACGCCGTTGAGAATTC 1587
|| || || || || ||| ||| | || || ||| | |||||||||| || || ||
Sbjct 1366 CCGTTTTCGACATCAAAAATCGCG-GAAATCAAGCGTGTCTTCCACGCTAAGGATAACTC 1424
Query 1588 GACGATGGGAGGTATAATCACCGACGCAGTGACGGAGTGCGAGAGGCCACCGAGC-GTCG 1646
||| |||| ||| ||||| || || || || || || || ||||| | |||| | | |
Sbjct 1425 GACAATGGCAGGGATAATTACTGATGCCGTAACAGAATGTGAGAGATCGCCGA-CAATTG 1483
Query 1647 GAGAGACGAAACGGTGCGTAGGATCAGCGGAGGATATGATCGATTTCGCGACGTCGGTG- 1705
| ||||| ||| | || || |||||||||||||||||||||||||||||||| || |||
Sbjct 1484 GCGAGACTAAAAGATGTGTCGGATCAGCGGAGGATATGATCGATTTCGCGACATCTGTGC 1543
Query 1706 TTAGGTCGTAGCGTGGTGCTTAGAACAACGGAGAACGTAGCCGGGTCAAAGGAAAAGGT- 1764
|| ||||| | |||||| || | || || |||| |||||||| |||||| |||| ||
Sbjct 1544 TT-GGTCGAAACGTGGTACTCCGGACTACAGAGAGTGTAGCCGGATCAAAGCAAAAAGTC 1602
Query 1765 AGTGATCGGGAAAGTCAACGGAATCAACGGTGGGAA-ATTAACGAAAGCTGTGTCGTGTC 1823
| ||||||| |||||||| |||||||||||||| || | | |||||| | ||||| ||||
Sbjct 1603 A-TGATCGGAAAAGTCAAAGGAATCAACGGTGG-AAGAGTGACGAAATCAGTGTCATGTC 1660
Query 1824 ATCAGAGTTTGTACCCGTATCT-ATTGTATTACTGCCACTCCGTACC-AAAGGTTCGGGT 1881
| || ||||||||||| || || | | || ||||| ||||| || || |||| |||| |
Sbjct 1661 ACCAAAGTTTGTACCCTTA-CTTACTCTACTACTGTCACTCTGTGCCTAAAG-TTCGAAT 1718
Query 1882 ATACGAAG-CTGATCTTCTAGAGTTG-AATAGTAA-GAAGAAGATTAACCACGGGATTGC 1938
|||||| | | |||||| | || | || ||||| | ||||| ||||| || |||||
Sbjct 1719 ATACGA-GTCAGATCTTTTGGA-TCCCAAGAGTAAAGCC-AAGATCAACCATGGTATTGC 1775
Query 1939 CATCTGTCACATGGACACGTCATCATGGGGTCCGAGTCATGGAGCTTTC-T-TAGCTCTC 1996
|| |||||||||||||| ||| | |||||| ||| |||||||| ||| | | ||| |
Sbjct 1776 TATATGTCACATGGACACATCAGCTTGGGGTGCGAACCATGGAGCCTTCATGTCGCT-T- 1833
Query 1997 GGGTCAAAACCGGGTCGGATCGAAGTTTGTCACTGGATATTTGAGAACGACATGAACTGG 2056
||||| ||||||| |||||| ||||| || ||||| |||||||| || ||||| |||
Sbjct 1834 GGGTCCCGGCCGGGTCAGATCGAGGTTTGCCATTGGATCTTTGAGAATGATATGAATTGG 1893
Query 2057 GCTATCGCTGATTAGACC 2074
|| ||||| ||||| |||
Sbjct 1894 GCCATCGCCGATTA-ACC 1910
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88597909870
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5