BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70390.1
Length=999
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926435 jgi|Araly1|926435|scaffold_201996.1 167 2e-40
Ahg951896 jgi|Araly1|951896|scaffold_23900002.1 119 5e-26
Ahg926489 jgi|Araly1|926489|scaffold_202050.1 119 5e-26
Ahg926355 jgi|Araly1|926355|scaffold_201916.1 60.2 3e-08
> Ahg926435 jgi|Araly1|926435|scaffold_201996.1
Length=1280
Score = 167 bits (90), Expect = 2e-40
Identities = 146/173 (84%), Gaps = 4/173 (2%)
Strand=Plus/Plus
Query 7 AATTCAAATTTCGAAACACTTCCTGAAGATCTACAAAAGGAGATT-TTGTTATGGTTGTC 65
|||||||||| | |||| | ||||||||||||| ||||| ||||| || ||| ||||| |
Sbjct 28 AATTCAAATTCCCAAACCCCTCCTGAAGATCTAGAAAAGAAGATTCTT-TTACGGTTGCC 86
Query 66 TCCAAAATCCTTGGTGAAATTCACCCTCGTCTCAAAGAAATGTGCATCTATTATCCGTGG 125
|| ||||||||||||||| ||| || |||||||||||||| |||||||||||||||||
Sbjct 87 TCTGAAATCCTTGGTGAAACTCATCCAAGTCTCAAAGAAATGGGCATCTATTATCCGTGG 146
Query 126 GGAAGAATTCAAA-GCTCTTTACATGCGCCGATCAATGACAAGGCCTCGTGTG 177
||||||||||| | | | ||| ||| ||||||||||||||| ||||| |||
Sbjct 147 GGAAGAATTCAGACG-TGAGTACTTGCTCCGATCAATGACAAGACCTCGAGTG 198
Score = 71.3 bits (38), Expect = 1e-11
Identities = 38/38 (100%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 785 ATTTCAAAGGTACCATTGGAACAGGAGAACTTGTTTTC 822
||||||||||||||||||||||||||||||||||||||
Sbjct 1055 ATTTCAAAGGTACCATTGGAACAGGAGAACTTGTTTTC 1092
> Ahg951896 jgi|Araly1|951896|scaffold_23900002.1
Length=250
Score = 119 bits (64), Expect = 5e-26
Identities = 131/162 (81%), Gaps = 10/162 (6%)
Strand=Plus/Plus
Query 1 ATGGATAATTCAAATTTCGAAACACTTCCTGAAGATCTACAAAAGGAGATTTTGTTATGG 60
||||| ||| ||||||||| |||||||||||||||||||||||||||||| ||||| ||
Sbjct 21 ATGGAGAATCCAAATTTCGGTACACTTCCTGAAGATCTACAAAAGGAGATTCTGTTACGG 80
Query 61 TTGTCTCCAAAATCCTTGG-TGAAATTCACCCTCGTCTCAAAGAAATGT-GCATCTATTA 118
||| ||| ||||||||||| || | | || | |||||||||| |||| | |||| |||
Sbjct 81 TTGCCTCTAAAATCCTTGGGTGTA-TGCATCGGCGTCTCAAAGCAATGGAG-ATCT-TTA 137
Query 119 -TCCG-TGGGGAAGAATTCAAAGCTCTTTACAT-GCGCCGAT 157
|||| | ||||||||| || ||||||| | | ||||||
Sbjct 138 ATCCGCTCCC-AAGAATTCAGAGATCTTTAC-TCGAGCCGAT 177
> Ahg926489 jgi|Araly1|926489|scaffold_202050.1
Length=250
Score = 119 bits (64), Expect = 5e-26
Identities = 131/162 (81%), Gaps = 10/162 (6%)
Strand=Plus/Plus
Query 1 ATGGATAATTCAAATTTCGAAACACTTCCTGAAGATCTACAAAAGGAGATTTTGTTATGG 60
||||| ||| ||||||||| |||||||||||||||||||||||||||||| ||||| ||
Sbjct 21 ATGGAGAATCCAAATTTCGGTACACTTCCTGAAGATCTACAAAAGGAGATTCTGTTACGG 80
Query 61 TTGTCTCCAAAATCCTTGG-TGAAATTCACCCTCGTCTCAAAGAAATGT-GCATCTATTA 118
||| ||| ||||||||||| || | | || | |||||||||| |||| | |||| |||
Sbjct 81 TTGCCTCTAAAATCCTTGGGTGTA-TGCATCGGCGTCTCAAAGCAATGGAG-ATCT-TTA 137
Query 119 -TCCG-TGGGGAAGAATTCAAAGCTCTTTACAT-GCGCCGAT 157
|||| | ||||||||| || ||||||| | | ||||||
Sbjct 138 ATCCGCTCCC-AAGAATTCAGAGATCTTTAC-TCGAGCCGAT 177
> Ahg926355 jgi|Araly1|926355|scaffold_201916.1
Length=1079
Score = 60.2 bits (32), Expect = 3e-08
Identities = 36/38 (95%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 785 ATTTCAAAGGTACCATTGGAACAGGAGAACTTGTTTTC 822
|||| |||||||||||||||||||||||||||| ||||
Sbjct 862 ATTTTAAAGGTACCATTGGAACAGGAGAACTTGCTTTC 899
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37131721158
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5