BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G70400.3 Length=910 Score E Sequences producing significant alignments: (Bits) Value Ahg339268 jgi|Araly1|339268|fgenesh1_pg.C_scaffold_2001367 763 0.0 Ahg316028 jgi|Araly1|316028|fgenesh1_pm.C_scaffold_2001061 617 3e-176 > Ahg339268 jgi|Araly1|339268|fgenesh1_pg.C_scaffold_2001367 Length=1713 Score = 763 bits (413), Expect = 0.0 Identities = 518/568 (91%), Gaps = 9/568 (2%) Strand=Plus/Plus Query 65 GCAACTCTTGAAGATATTGGTATGGACATGACAGAATTAAATACCCTTACCTACGATGAT 124 |||| ||||||||||||||||||||||||| |||| ||||| || |||| |||||||||| Sbjct 1123 GCAAATCTTGAAGATATTGGTATGGACATGGCAGACTTAAAGACACTTAACTACGATGAT 1182 Query 125 CTCGATAGTGTTTCAAAGCTACAAAAAAGTCGGAGATATGCTGATATAATGCAGCAAGTG 184 ||||||| | ||||||||||||||||||||| |||||||||||||||||| || ||||| Sbjct 1183 CTCGATAATTTTTCAAAGCTACAAAAAAGTCAGAGATATGCTGATATAATACAAAAAGTG 1242 Query 185 GAAGAGGCTCTT--G-AAGGATCTGTATTAGAGTACAAGAAGCTAATCGTGGACTGCAAG 241 |||||||||||| | ||||| ||||||||||||||||||||||||||| ||| || || Sbjct 1243 GAAGAGGCTCTTGAGAAAGGAACTGTATTAGAGTACAAGAAGCTAATCGAGGATTGTAAT 1302 Query 242 CAGCTCTTAGTTGATATTGAGAATGAAATAGTCATCGTCCAAAACTTTATCCGTGACAAG 301 |||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||| Sbjct 1303 CAGCTCTTAGTTGATATTGAGAATGAAATAGTCATCGTTCACAACTTTATCCGTGAGAAG 1362 Query 302 TATAGAGTTAAGTTTCAAGAGCTTGAGTTGCTT-GTTCCTCACCCAATCGATTATGCTCG 360 |||||| ||||||||||||||||||||| | || |||| ||||||||||||||||| ||| Sbjct 1363 TATAGACTTAAGTTTCAAGAGCTTGAGTCG-TTGGTTCATCACCCAATCGATTATGTTCG 1421 Query 361 TGTTGTGAAAAGAATTGGCAATGAGATGGATTTAAAACTTGTTGATCTTGAAGGCCTTCT 420 |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| Sbjct 1422 TGTTGTGAAAAGAATTGGCAATGAGATGGACTTAACCCTTGTTGATCTTGAAGGCCTTCT 1481 Query 421 TCCATCTGCTATGATCATGGTTCTTTTAGTTACTGCTTTAACCACAAAAGGGAACCAACT 480 |||||| ||||||||||||||| ||| ||||||||||| |||||| ||||| |||||||| Sbjct 1482 TCCATCAGCTATGATCATGGTTGTTTCAGTTACTGCTTCAACCACGAAAGGTAACCAACT 1541 Query 481 GCC-AGAGGATGTTCTGCTAAAGACGATAGACGCTTGTGATCGGGCTCTGGATCTTGATT 539 ||| | |||||||||||||||| |||||||| |||||| |||||||||| |||||||||| Sbjct 1542 GCCTA-AGGATGTTCTGCTAAAAACGATAGATGCTTGTAATCGGGCTCTAGATCTTGATT 1600 Query 540 CCGCAAGGAAGAAGCCATCTCATGCTTCGGAAACACCCTCCTCCTCTGCATCTGGATAC- 598 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | Sbjct 1601 CCGCAAGGAAGAAGCCATCTCATGCTTCGGAAACACCGTCCTCCTCTGCATCTGGAT-CG 1659 Query 599 AAGTCTCTGGAAAACGTAAAGCATATCA 626 |||||| |||||||| |||||| ||||| Sbjct 1660 AAGTCTGTGGAAAACATAAAGCCTATCA 1687 > Ahg316028 jgi|Araly1|316028|fgenesh1_pm.C_scaffold_2001061 Length=510 Score = 617 bits (334), Expect = 3e-176 Identities = 424/467 (91%), Gaps = 7/467 (1%) Strand=Plus/Plus Query 92 ATGACAGAATTAAATACCCTTACCTACGATGATCTCGATAGTGTTTCAAAGCTACAAAAA 151 ||| |||| ||||| || |||| ||||||||||||||||| | ||||||||||||||||| Sbjct 1 ATGGCAGACTTAAAGACACTTAACTACGATGATCTCGATAATTTTTCAAAGCTACAAAAA 60 Query 152 AGTCGGAGATATGCTGATATAATGCAGCAAGTGGAAGAGGCTCTT--G-AAGGATCTGTA 208 |||| |||||||||||||||||| || ||||||||||||||||| | ||||| ||||| Sbjct 61 AGTCAGAGATATGCTGATATAATACAAAAAGTGGAAGAGGCTCTTGAGAAAGGAACTGTA 120 Query 209 TTAGAGTACAAGAAGCTAATCGTGGACTGCAAGCAGCTCTTAGTTGATATTGAGAATGAA 268 |||||||||||||||||||||| ||| || || ||||||||||||||||||||||||||| Sbjct 121 TTAGAGTACAAGAAGCTAATCGAGGATTGTAATCAGCTCTTAGTTGATATTGAGAATGAA 180 Query 269 ATAGTCATCGTCCAAAACTTTATCCGTGACAAGTATAGAGTTAAGTTTCAAGAGCTTGAG 328 ||||||||||| || |||||||||||||| ||||||||| |||||||||||||||||||| Sbjct 181 ATAGTCATCGTTCACAACTTTATCCGTGAGAAGTATAGACTTAAGTTTCAAGAGCTTGAG 240 Query 329 TTGCTTG-TTCCTCACCCAATCGATTATGCTCGTGTTGTGAAAAGAATTGGCAATGAGAT 387 | | ||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 241 TCG-TTGGTTCATCACCCAATCGATTATGTTCGTGTTGTGAAAAGAATTGGCAATGAGAT 299 Query 388 GGATTTAAAACTTGTTGATCTTGAAGGCCTTCTTCCATCTGCTATGATCATGGTTCTTTT 447 ||| |||| ||||||||||||||||||||||||||||| ||||||||||||||| ||| Sbjct 300 GGACTTAACCCTTGTTGATCTTGAAGGCCTTCTTCCATCAGCTATGATCATGGTTGTTTC 359 Query 448 AGTTACTGCTTTAACCACAAAAGGGAACCAACTGCC-AGAGGATGTTCTGCTAAAGACGA 506 ||||||||||| |||||| ||||| ||||||||||| | |||||||||||||||| |||| Sbjct 360 AGTTACTGCTTCAACCACGAAAGGTAACCAACTGCCTA-AGGATGTTCTGCTAAAAACGA 418 Query 507 TAGACGCTTGTGATCGGGCTCTGGATCTTGATTCCGCAAGGAAGAAG 553 |||| |||||| |||||||||| |||||||||||||||||||||||| Sbjct 419 TAGATGCTTGTAATCGGGCTCTAGATCTTGATTCCGCAAGGAAGAAG 465 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33738781545 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5