BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70400.3
Length=910
Score E
Sequences producing significant alignments: (Bits) Value
Ahg339268 jgi|Araly1|339268|fgenesh1_pg.C_scaffold_2001367 763 0.0
Ahg316028 jgi|Araly1|316028|fgenesh1_pm.C_scaffold_2001061 617 3e-176
> Ahg339268 jgi|Araly1|339268|fgenesh1_pg.C_scaffold_2001367
Length=1713
Score = 763 bits (413), Expect = 0.0
Identities = 518/568 (91%), Gaps = 9/568 (2%)
Strand=Plus/Plus
Query 65 GCAACTCTTGAAGATATTGGTATGGACATGACAGAATTAAATACCCTTACCTACGATGAT 124
|||| ||||||||||||||||||||||||| |||| ||||| || |||| ||||||||||
Sbjct 1123 GCAAATCTTGAAGATATTGGTATGGACATGGCAGACTTAAAGACACTTAACTACGATGAT 1182
Query 125 CTCGATAGTGTTTCAAAGCTACAAAAAAGTCGGAGATATGCTGATATAATGCAGCAAGTG 184
||||||| | ||||||||||||||||||||| |||||||||||||||||| || |||||
Sbjct 1183 CTCGATAATTTTTCAAAGCTACAAAAAAGTCAGAGATATGCTGATATAATACAAAAAGTG 1242
Query 185 GAAGAGGCTCTT--G-AAGGATCTGTATTAGAGTACAAGAAGCTAATCGTGGACTGCAAG 241
|||||||||||| | ||||| ||||||||||||||||||||||||||| ||| || ||
Sbjct 1243 GAAGAGGCTCTTGAGAAAGGAACTGTATTAGAGTACAAGAAGCTAATCGAGGATTGTAAT 1302
Query 242 CAGCTCTTAGTTGATATTGAGAATGAAATAGTCATCGTCCAAAACTTTATCCGTGACAAG 301
|||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||
Sbjct 1303 CAGCTCTTAGTTGATATTGAGAATGAAATAGTCATCGTTCACAACTTTATCCGTGAGAAG 1362
Query 302 TATAGAGTTAAGTTTCAAGAGCTTGAGTTGCTT-GTTCCTCACCCAATCGATTATGCTCG 360
|||||| ||||||||||||||||||||| | || |||| ||||||||||||||||| |||
Sbjct 1363 TATAGACTTAAGTTTCAAGAGCTTGAGTCG-TTGGTTCATCACCCAATCGATTATGTTCG 1421
Query 361 TGTTGTGAAAAGAATTGGCAATGAGATGGATTTAAAACTTGTTGATCTTGAAGGCCTTCT 420
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1422 TGTTGTGAAAAGAATTGGCAATGAGATGGACTTAACCCTTGTTGATCTTGAAGGCCTTCT 1481
Query 421 TCCATCTGCTATGATCATGGTTCTTTTAGTTACTGCTTTAACCACAAAAGGGAACCAACT 480
|||||| ||||||||||||||| ||| ||||||||||| |||||| ||||| ||||||||
Sbjct 1482 TCCATCAGCTATGATCATGGTTGTTTCAGTTACTGCTTCAACCACGAAAGGTAACCAACT 1541
Query 481 GCC-AGAGGATGTTCTGCTAAAGACGATAGACGCTTGTGATCGGGCTCTGGATCTTGATT 539
||| | |||||||||||||||| |||||||| |||||| |||||||||| ||||||||||
Sbjct 1542 GCCTA-AGGATGTTCTGCTAAAAACGATAGATGCTTGTAATCGGGCTCTAGATCTTGATT 1600
Query 540 CCGCAAGGAAGAAGCCATCTCATGCTTCGGAAACACCCTCCTCCTCTGCATCTGGATAC- 598
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1601 CCGCAAGGAAGAAGCCATCTCATGCTTCGGAAACACCGTCCTCCTCTGCATCTGGAT-CG 1659
Query 599 AAGTCTCTGGAAAACGTAAAGCATATCA 626
|||||| |||||||| |||||| |||||
Sbjct 1660 AAGTCTGTGGAAAACATAAAGCCTATCA 1687
> Ahg316028 jgi|Araly1|316028|fgenesh1_pm.C_scaffold_2001061
Length=510
Score = 617 bits (334), Expect = 3e-176
Identities = 424/467 (91%), Gaps = 7/467 (1%)
Strand=Plus/Plus
Query 92 ATGACAGAATTAAATACCCTTACCTACGATGATCTCGATAGTGTTTCAAAGCTACAAAAA 151
||| |||| ||||| || |||| ||||||||||||||||| | |||||||||||||||||
Sbjct 1 ATGGCAGACTTAAAGACACTTAACTACGATGATCTCGATAATTTTTCAAAGCTACAAAAA 60
Query 152 AGTCGGAGATATGCTGATATAATGCAGCAAGTGGAAGAGGCTCTT--G-AAGGATCTGTA 208
|||| |||||||||||||||||| || ||||||||||||||||| | ||||| |||||
Sbjct 61 AGTCAGAGATATGCTGATATAATACAAAAAGTGGAAGAGGCTCTTGAGAAAGGAACTGTA 120
Query 209 TTAGAGTACAAGAAGCTAATCGTGGACTGCAAGCAGCTCTTAGTTGATATTGAGAATGAA 268
|||||||||||||||||||||| ||| || || |||||||||||||||||||||||||||
Sbjct 121 TTAGAGTACAAGAAGCTAATCGAGGATTGTAATCAGCTCTTAGTTGATATTGAGAATGAA 180
Query 269 ATAGTCATCGTCCAAAACTTTATCCGTGACAAGTATAGAGTTAAGTTTCAAGAGCTTGAG 328
||||||||||| || |||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 181 ATAGTCATCGTTCACAACTTTATCCGTGAGAAGTATAGACTTAAGTTTCAAGAGCTTGAG 240
Query 329 TTGCTTG-TTCCTCACCCAATCGATTATGCTCGTGTTGTGAAAAGAATTGGCAATGAGAT 387
| | ||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 TCG-TTGGTTCATCACCCAATCGATTATGTTCGTGTTGTGAAAAGAATTGGCAATGAGAT 299
Query 388 GGATTTAAAACTTGTTGATCTTGAAGGCCTTCTTCCATCTGCTATGATCATGGTTCTTTT 447
||| |||| ||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 300 GGACTTAACCCTTGTTGATCTTGAAGGCCTTCTTCCATCAGCTATGATCATGGTTGTTTC 359
Query 448 AGTTACTGCTTTAACCACAAAAGGGAACCAACTGCC-AGAGGATGTTCTGCTAAAGACGA 506
||||||||||| |||||| ||||| ||||||||||| | |||||||||||||||| ||||
Sbjct 360 AGTTACTGCTTCAACCACGAAAGGTAACCAACTGCCTA-AGGATGTTCTGCTAAAAACGA 418
Query 507 TAGACGCTTGTGATCGGGCTCTGGATCTTGATTCCGCAAGGAAGAAG 553
|||| |||||| |||||||||| ||||||||||||||||||||||||
Sbjct 419 TAGATGCTTGTAATCGGGCTCTAGATCTTGATTCCGCAAGGAAGAAG 465
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33738781545
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5