BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70410.2
Length=1336
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476161 jgi|Araly1|476161|fgenesh2_kg.2__1291__AT1G70410.2 1943 0.0
> Ahg476161 jgi|Araly1|476161|fgenesh2_kg.2__1291__AT1G70410.2
Length=1338
Score = 1943 bits (1052), Expect = 0.0
Identities = 1262/1357 (93%), Gaps = 40/1357 (3%)
Strand=Plus/Plus
Query 1 CGAACGGTCGTCATAATTCCTTGAAACCTCGAAAATCCAAAAACCCATATCCAATCTTCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CGAACGGTCGTCATAATTCCTTGAAACCTCGAAAATCCAAAAACCCATATCCAATCTTCT 60
Query 61 TCCC--AT----ATA--AATTAAGATTTTTATTTATTTATTTGTTTACTTATTTCAATTC 112
|||| || ||| ||||||||||||| || || ||| |||||||||||||||||
Sbjct 61 TCCCAAATAAACATATGAATTAAGATTTTT-TTGGGTT-TTTATTTACTTATTTCAATTC 118
Query 113 CCAAAATCCTCTGCCTCATCATCTTCAAACTGTTACCACGTCCATAGGGTTGTCGAAGAG 172
||||||| |||||| ||||||||||| ||||||| |||||||||||||||| |||| |||
Sbjct 119 CCAAAATTCTCTGCATCATCATCTTCGAACTGTTCCCACGTCCATAGGGTTTTCGAGGAG 178
Query 173 CTAGGA-AGAGCCTTACCAAGAGCTTC-TTCTTC--CCCTAACATTTAGGTTGGTAGGAG 228
||| || ||||| ||| |||||||||| |||||| ||||||||||||||| ||||||||
Sbjct 179 CTA-GAGAGAGCATTATCAAGAGCTTCTTTCTTCATCCCTAACATTTAGGTAGGTAGGAG 237
Query 229 AAGCAAAGGAAGAGATCATTTATAATGGCTCCTGCATTCGGAAAATGTTTCATGTTCTGC 288
||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 238 AAGCAGAGGAAGAGATCATTTATAATGGCTCCTGCATTCGGCAAATGTTTCACGTTCTGT 297
Query 289 TGCGCTAAAACCTCCCCGGAAAAAGACGAAATGGCAACGGAATCGTACGAAGCCGCCATT 348
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 298 TGCGCTAAGACCTCCCCGGAAGAAGACGAAATGGCAACGGAATCGTACGAAGCCGCCATT 357
Query 349 AAAGGACTCAATGATCTTCTCAGTACGAAAGCGGATCTCGGAAACGTCGCCGCCGCGAAG 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 AAAGGACTCAATGATCTTCTCAGTACGAAAGCGGATCTCGGAAACGTCGCCGCCGCGAAG 417
Query 409 ATCAAAGCGTTGACGGCGGAGCTAAAGGAGCTTGACTC-AAGCAATTCAGACGCAATTGA 467
|||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||
Sbjct 418 ATCAAAGCGTTGACGGCGGAGCTAAAGGAGCTTGACTCCAA-CAATTCAGACGCTATTGA 476
Query 468 ACGAATCAAGACCGGTTTTACTCAATTCAAAACCGAGAAATATTTGAAGAATAGTACTTT 527
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 477 ACGAATCAAGACTGGTTTTACTCAATTCAAAACTGAGAAATATTTGAAGAATAGTGCTTT 536
Query 528 GTTCAATCATCTTGCCAAGA-CTCAGACCCCAAAGTTTCTGGTGTTTGCTTGCTCTGATT 586
||||||| ||||||||||| | |||| |||||||||||||||||||||||| |||||||
Sbjct 537 GTTCAATGATCTTGCCAAGGGC-CAGAGCCCAAAGTTTCTGGTGTTTGCTTGTTCTGATT 595
Query 587 CTCGAGTTTGTCCATCTCACATCTTGAATTTCCAACCTGGTGAGGCTTTTGTTGTCAGAA 646
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 596 CTCGAGTTTGTCCATCTCACATCTTGAATTTCGGACCTGGTGAGGCTTTTGTTGTCAGAA 655
Query 647 ACATAGCCAATATGGTTCCACCTTTTGACCAGAAGAGACACTCTGGAGTTGGCGCCGCCG 706
|||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 656 ACATTGCCAACATGGTTCCACCTTTTGACCAGAAGAGACACTCTGGAGTTGGAGCCGCCG 715
Query 707 TTGAATACGCAGTTGTACATCTCAAGGTGGAGAACATTTTGGTGATAGGCCATAGCTGCT 766
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 TCGAATACGCAGTTGTACATCTCAAGGTGGAGAACATTTTGGTGATAGGCCATAGCTGCT 775
Query 767 GTGGTGGTATTAAGGGACTCATGTCCATTGAAGATGATGCTGCCCCAACTCAAAGTGACT 826
||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 776 GTGGTGGCATTAAGGGACTCATGAACATTGAAGATGATGCTGCCCCAACTCAGAGTGACT 835
Query 827 TCATTGAAAATTGGGTGAAGATAGGCGCATCAGCGAGGAACAAGATCAAGGAGGAACATA 886
|||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 836 TCATAGAAAACTGGGTGAAGATTGGCGCATCAGCGAGGAACAAGATCAAGGAGGAACATA 895
Query 887 AAGACTTGAGCTACGATGATCAATGCAACAAGTGTGAGAAGGAAGCTGTGAACGTATCGC 946
||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 896 AAGACCTGAGCTACGATGAGCAATGCAACAAGTGTGAGAAGGAAGCTGTGAATGTATCGC 955
Query 947 TTGGAAACTTGCTTTCGTACCCATTCGTGAGAGCTGAGGTGGTGAAGAACACACTTGCAA 1006
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 956 TTGGAAACTTGCTTTCGTACCCATTCGTGAGAGCTGCGGTAGTGAAGAACACACTTGCAA 1015
Query 1007 TAAGAGGAGGTCACTACAATTTCGTCAAAGGAACGTTTGATCTCTGGGAGCTCGATTTCA 1066
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1016 TAAGAGGAGGTCACTACAATTTCGTCAAAGGAACATTTGATCTCTGGGAGCTCGATTTCA 1075
Query 1067 AGACCACTCCTGCTTTTGCCTTCTCTTAAGAAAGAAAGCTACCGGAACATATAAAACTCT 1126
|||||||||||||| |||||||||||||| ||| |||| | |||| |||||| ||||
Sbjct 1076 AGACCACTCCTGCTGTTGCCTTCTCTTAA-AAA-AAAGAAAG-GGAATATATAA--CTCT 1130
Query 1127 TTTGAGATaaaaaaaGACACTTTGACTCATCTTTCTTCATTCTCTCATGTTGATGATTCC 1186
||||||||||||| ||||||||||||||||||||| | | | |||||||||||| |
Sbjct 1131 TTTGAGATAAAAA--GACACTTTGACTCATCTTTCT-C-T-C----ATGTTGATGATTAC 1181
Query 1187 TCTCCAACTTCTTTGATTTCTTTTT------GTTAATTCAAAACTTCAACTTTGCTGCTT 1240
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1182 TCTCCAACTTCTTTGGTTTCTTTTTTCTTTTGTTAATTCAAAACTTCAACTTTGCTGCTT 1241
Query 1241 CTATTTCAAAAGCTCAAACAATAAA-GCTGTAACCAACGTTTGAAACTTCTATATTTGTC 1299
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1242 CTATTTCAAAAGCTTAAACAATAAAAGCTGTAACCAACGTTTGAAACTTCTATATTTGTC 1301
Query 1300 TAATTGATGTTTGAACGAAGATTTGAACTTTCCTTCT 1336
|||||||||||||||||||||| ||||||||||||||
Sbjct 1302 TAATTGATGTTTGAACGAAGATATGAACTTTCCTTCT 1338
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49979144187
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5