BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70430.1
Length=2151
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476163 jgi|Araly1|476163|fgenesh2_kg.2__1293__AT1G70430.1 1611 0.0
> Ahg476163 jgi|Araly1|476163|fgenesh2_kg.2__1293__AT1G70430.1
Length=1815
Score = 1611 bits (872), Expect = 0.0
Identities = 1080/1177 (92%), Gaps = 27/1177 (2%)
Strand=Plus/Plus
Query 692 CTTGCTCATGGTCATGCCCCATTTTCCAAATATCCACCTATGAAGGTGCTACTAATGACA 751
||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||
Sbjct 640 CTTGCTCATGGTCATGCTCCATTTTCAAAATATCCACCTATGAAGGTGCTATTAATGACA 699
Query 752 TTACAAAATGCACCTCCTCGTCTAGACTATGACAGAGATAAGAAATTCTCAAAGTCATTT 811
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 700 TTACAAAATGCTCCTCCTCGTCTTGACTATGACAGAGATAAGAAATTCTCAAAGTCGTTT 759
Query 812 AGAGAGTTAATCGCAGCGTGCTTAGTTAAAGATCCGAAAAAGCGTCCAACTGCAGCAAAA 871
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 760 AGAGAGTTAATCGCAGCCTGCTTAGTTAAAGATCCAAAAAAGCGTCCAACTGCAGCAAAA 819
Query 872 CTTCTGAAACATCCTTTCTTCAAACATGCTCGGTCTACAGATTATTTGTCCCGTAAAATT 931
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 820 CTTCTGAAACACCCTTTCTTCAAACATGCTCGGTCTACAGATTATTTGTCCCGTAAAATT 879
Query 932 CTTCATGGTCTTTCTCCACTTGGTGAACGTTTTAAAAAGCTCAAGGAGGCAGAGGCTGAG 991
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 880 CTTCATGGTCTTTCTCCGCTTGGTGAACGTTTTAAAAAGCTCAAGGAGGCGGAGGCTGAG 939
Query 992 TTGTTCAAAGGCATAAATGGTGACAAAGAACAGTTGTCTCAGCATGAGTATATGAGAGGA 1051
||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 940 TTGTTTAAAGGCATAAATGGTGAGAAAGAACAGTTATCTCAGCATGAGTATATGAGAGGA 999
Query 1052 ATTAGTGCTTGGAACTTTGATCTTGAAGCA-TTGAGAAGGCAGGCATCACTTGTAATTAT 1110
|||||||||||||| |||||||| |||| | ||||| ||||||| || | ||||||
Sbjct 1000 ATTAGTGCTTGGAATTTTGATCTCGAAG-ACTTGAGGAGGCAGG---CA---GCAATTAT 1052
Query 1111 TCCAAATGAAGAAATCTATAATTCAGAGATACAGGAACTGAACAGAAATGGAGATGTACC 1170
||| ||||| ||||| | ||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1053 TCCGAATGATGAAATGTGCAATTCAGAGATTCAGGAACTGAACAAAAATGGAGATGTACC 1112
Query 1171 AAAAGGAAAACCAGTGATACAAAGGTCACAGACTATGCCTTTGGAATATTTCTCAGAAAA 1230
||||||||| |||||||| |||||||||||||||||||||||||||| ||| |||| ||
Sbjct 1113 AAAAGGAAAGCCAGTGATGCAAAGGTCACAGACTATGCCTTTGGAATTTTTTTCAG--AA 1170
Query 1231 GGCAAGTGATATGGTGAGTGAGAG-TAGCAGTCAATTAACCGGTTCATTACTTCCTTCGT 1289
||| |||||| |||||||||| || |||||||||||||||||||||||||||||| |
Sbjct 1171 ---AAG-GATATGATGAGTGAGAGTTA-CAGTCAATTAACCGGTTCATTACTTCCTTCAT 1225
Query 1290 TTCATCGCAAATTCCTCCCGGCTCTTGGCAATGCATGTAACTCGAGCGATAGAGCAGCAG 1349
| |||||||||||||||||| || |||| ||||||||| |||||||||| ||| ||||
Sbjct 1226 TCCATCGCAAATTCCTCCCGACTATTGGAAATGCATGTTGCTCGAGCGATGGAGTTGCAG 1285
Query 1350 AGAAGCTCGCT-TTTGAAGAGCCACGTCAAGTACTACACCCATTAGCGGATACAAAGAAA 1408
||||||||||| || ||| |||||| || | |||| | ||||||||||||||| || ||
Sbjct 1286 AGAAGCTCGCTCTTGGAA-AGCCACATC-A--ACTAGAACCATTAGCGGATACAGAGCAA 1341
Query 1409 ATTAGAAAAGCAGGAAGTGATCAGCAGGAGAAACCAAAAAATGGTTACGCAGATAGTCCT 1468
||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 1342 ATTGGAAAAGCAGGAAGTG---AGCAGGAGAAACCAAAAAATGGTTACGCAGTTAGTCCT 1398
Query 1469 GTGAACCGTGAATCTTCCACATTATCAAAGGAACCATTAGCGGATACAAAGCAAGTTAGA 1528
|||||||||||||||||||| |||||||||||||||||| || ||||||||| |||||
Sbjct 1399 GTGAACCGTGAATCTTCCAC---ATCAAAGGAACCATTAGCAGACACAAAGCAAATTAGA 1455
Query 1529 AAACCAGGAAATGAGCAGGAGAAACCAAAAAACGGCTATATAGTTAGTCATGTGAACCGT 1588
||| ||| ||||||||||||||||||||||||||||||| ||||||||| ||||||| ||
Sbjct 1456 AAAGCAGCAAATGAGCAGGAGAAACCAAAAAACGGCTATGTAGTTAGTCCTGTGAACGGT 1515
Query 1589 GAATCTTCCACATCAGAGGAAATCCTCCCACTGTTGCAGAGTCTCCTGGTTCAGAATGAC 1648
||||||||| ||||| |||||||||||||||| || |||||||| |||||||||||||||
Sbjct 1516 GAATCTTCCCCATCAAAGGAAATCCTCCCACTATTACAGAGTCTTCTGGTTCAGAATGAC 1575
Query 1649 ATTCAAAGGGCGCAAGTAATCAGGTTAATTAGATTTTTTGATCGAACTGCGAAAACGGAA 1708
|||||||||||| ||||||| |||||||||||||||||||||||||||||| ||| |||
Sbjct 1576 ATTCAAAGGGCGAAAGTAATAAGGTTAATTAGATTTTTTGATCGAACTGCGGGAACTGAA 1635
Query 1709 AATCCAATCTCAAAAACCGAAGGAGTGCAGGAGAAAGATCTGCAATCTCAAGTTCAGTTT 1768
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1636 AATCCGATCTCAAAAACCGAAGGAGTGCAGGAGAAAGATCTACAATCTCAAGTTCAGTTT 1695
Query 1769 TTGGAGCAAAGTGTTGAGAAGCTTGTAGAGGAAGTTCAGAGAAGAAAAGATATAAATAGT 1828
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1696 TTGGAGCAAAGTGTTGAGAAGCTTGTAGAGGAAGTTCAGAGAAGAAAAGAAATAAATAGT 1755
Query 1829 CAGCTAGAGCAACAGATCAGCTCTCTGATTAGCAGCA 1865
|||||||| ||||||||||||||||||||||||||||
Sbjct 1756 CAGCTAGAACAACAGATCAGCTCTCTGATTAGCAGCA 1792
Score = 929 bits (503), Expect = 0.0
Identities = 565/595 (95%), Gaps = 4/595 (1%)
Strand=Plus/Plus
Query 95 ATGGCTGGTTCATCAACGAA-ACGATTTCCTCTATATGCTAAAGATTATGAGCTCTTTGA 153
|||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||
Sbjct 1 ATGGCTGGTTCATCAACGAAGA-GATTTCCTCTCTATGCTAAAGATTATGAGCTCTTTGA 59
Query 154 AGAGGTAGGAGAAGGTGTTAGTGCTACTGTGTATAGAGCTCGTTGCATTGCTCTTAACGA 213
||||||||| |||||||||||||||||||| || | ||||||||||||||||||||||||
Sbjct 60 AGAGGTAGGTGAAGGTGTTAGTGCTACTGTTTACAAAGCTCGTTGCATTGCTCTTAACGA 119
Query 214 GATTGTCGCTGTTAAAATCTTGGATCTCGAAAAATGCAGGAATGATTTGGAAACAATACG 273
||||||||| |||||||||||||| |||||||||||||| || ||||||||||| |||||
Sbjct 120 GATTGTCGCCGTTAAAATCTTGGACCTCGAAAAATGCAGAAACGATTTGGAAACTATACG 179
Query 274 CAAGGAAGTTCATATAATGAGTTTGATTGATCATCCGAATTTATTGAAAGCGCATTGTTC 333
||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 180 CAAGGAAGTTCATATTATGAGTTTAATAGATCATCCGAATTTATTGAAAGCGCATTGTTC 239
Query 334 GTTTATCGA-CAGTAGTAGTTTGTGGATTGTAATGCCTTATATGTCGGGTGGTTCTTGTT 392
||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 240 GTTTATCGATC-GTAGTAGTTTGTGGATTGTAATGCCTTATATGTCTGGTGGTTCTTGTT 298
Query 393 TTCATTTAATGAAATCTGTATATCCGGAAGGTCTTGAGCAACCTATAATTGCTACTTTGT 452
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 299 TTCATTTAATGAAATCTGTATATCCGGAAGGTCTTGAGCAACCTATAATCGCTACTTTGT 358
Query 453 TGAGGGAAGTGCTTAAAGCTCTTGTTTATCTTCATAGACAAGGTCACATCCATAGAGATG 512
| ||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 359 TAAGGGAAGTGCTTAGAGCGCTTGTTTATCTTCATCGACAAGGTCACATCCATAGAGATG 418
Query 513 TTAAGGCTGGGAATATATTGATTCACTCAAAAGGCGTAGTTAAACTTGGAGACTTTGGAG 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TTAAGGCTGGGAATATATTGATTCACTCAAAAGGCGTAGTTAAACTTGGAGACTTTGGAG 478
Query 573 TTTCAGCATGTATGTTTGATAGTGGAGAAAGAATGCAAACAAGGAATACATTCGTTGGGA 632
|||||||||||||||||||||| |||||||| |||| || |||||||||||||||||||
Sbjct 479 TTTCAGCATGTATGTTTGATAGCGGAGAAAGGATGCGTACTAGGAATACATTCGTTGGGA 538
Query 633 CTCCTTGTTGGATGGCACCTGAGGTTATGCAGCAACTAGATGGATATGATTTCAA 687
| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 539 CGCCTTGTTGGATGGCACCTGAGGTTATGCAGCAAGTAGATGGATATGATTTCAA 593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80941770625
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5