BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70440.1
Length=1114
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476164 jgi|Araly1|476164|fgenesh2_kg.2__1294__AT1G70440.1 1419 0.0
> Ahg476164 jgi|Araly1|476164|fgenesh2_kg.2__1294__AT1G70440.1
Length=993
Score = 1419 bits (768), Expect = 0.0
Identities = 924/999 (92%), Gaps = 11/999 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGCACAAGTCGAGATCGAAGATCAAGAATCCGTCACGAATTTAGACAACGGCGAA 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGCGGCACAAGTCGAGATCGAAGATCAAGAATCCGTCACCAATTTAGACAACGGCGAA 60
Query 61 ATCATCAACCCCATCTCCGACAACGCACCTAACTTCTCCGGCG-ATGCAACGATTCTTCT 119
|||||||||||| | | |||| |||||||||||||||||| || |||||| ||||||
Sbjct 61 ATCATCAACCCC-GGTTC-TCAAC-CACCTAACTTCTCCGGCGAAT-CAACGACTCTTCT 116
Query 120 CCGTGAAGCCACCTTCGAACACAACCTCATCAAAAACTGTTTCCTCTCCGGAATGGGCTC 179
|| |||| |||||||||||||| ||||| ||||||||||||||||| |||||||||| ||
Sbjct 117 CCATGAATCCACCTTCGAACACGACCTCGTCAAAAACTGTTTCCTCACCGGAATGGGATC 176
Query 180 ATTCGCCACCGAAACAACAATCGTCACCGTACGAAAAATCTTAACGCAGAGATTAATCAC 239
|||||||| ||| ||||||||||||||||||||||||| || |||| ||||| ||||||
Sbjct 177 ATTCGCCAACGAGACAACAATCGTCACCGTACGAAAAAACTCAACGGAGAGAAGAATCAC 236
Query 240 AACGAAAGCTAAATTCGCTGTGTTCAAGCTTTTCACAGAAGCTATGAAGAGGAAGAACAA 299
||| |||||||||||||||||||||||| |||||||||||||||||| || |||||||||
Sbjct 237 AACCAAAGCTAAATTCGCTGTGTTCAAGATTTTCACAGAAGCTATGACGAAGAAGAACAA 296
Query 300 CGGTTACGCGAATATTAGGTACGGTTGGTACTCTGGTTCTAAAGAAGAGATCGATCGTGT 359
||| |||| ||| ||| ||||| |||||||||||||| ||||||||||||||||||||
Sbjct 297 CGGAGACGCCAATGTTAAATACGGATGGTACTCTGGTTCCAAAGAAGAGATCGATCGTGT 356
Query 360 TATTACGTATGGGTTTAGTAATAGAGAGATCAAGAAAGTCGAAAACGACGTCGGATCTCA 419
|||||||||||| ||||||||| | |||||| ||||| ||||||||||||||||||||||
Sbjct 357 TATTACGTATGGATTTAGTAATCGTGAGATCGAGAAATTCGAAAACGACGTCGGATCTCA 416
Query 420 CGGTGTTGGAATTCATCTTGTTCATCATCGTTACTCTCTCGCTGCGGCTTTAGTTGGTGA 479
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 417 CGGTGTTGGAATTCATCTTGTTCATCATCGATACTCTCTCGCTGCGGCTTTAGTTGGTGA 476
Query 480 AGGTGATGAAGAAGGGATCAAGAATATTCTCTTATGCCGTGTGATTCTTGGTAAACCGGA 539
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 477 AGGTGATGAAGAAGGGATAAAGAATATTCTCTTATGCCGTGTGATTCTTGGTAAACCGGA 536
Query 540 ACAAATTGTGACC-GGTTCTAAACAATCTTACCCAAGTTCAAACCAATTTGATTCTGGTG 598
|||||| | | | |||||||||||||| ||||| ||||| |||| ||||||||||||||
Sbjct 537 ACAAATCGA-AGCTGGTTCTAAACAATCGTACCCGAGTTCGAACCGATTTGATTCTGGTG 595
Query 599 TTGATAATCTTGAGAATCCGAGAAAATATGTGATTTGGAGTTGTAACATGAATTCTTACA 658
||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||
Sbjct 596 TTGATAATCTTGAGAATCCAAGAAAATATGTGATTTGGAGCTCTAACATGAATTCTTACA 655
Query 659 TTCTTCCAACTTATATCGTCAGTTTCAAATCTCATCTTCTCAGAGGTCTAATTGGAAGAG 718
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 656 TTCTTCCTACTTATATCGTCAGTTTCAAATCTCCTCTTCTCAGAGGTCTAATTGGAAGAG 715
Query 719 CAAGGTCACCATGTGTTAGCTTCTCTGTTCTTATGTCAATTCTTTCAAAGTCACTTGACG 778
||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
Sbjct 716 CAAGGTCACCATGTGTTAGCTTCTCTGCTCTTATGTCAATTCTTTCGAAGTCACTTGATG 775
Query 779 CTGCAAGAATGAACTTGATTTTGACTAGTTATGATGATTTTAGGAAACGGAAACTGAGGA 838
| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
Sbjct 776 TTACAAGAATGAACTTGATTTTGACAAGTTATGATGATTTTAGGAAACGGAAGCTGAGAA 835
Query 839 GAGAGCAGCTAGTTAGGAAGATTAGGGAAGTGGTTGGAGA-CAATCTTCTTTTCAAGATA 897
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 836 GAGAGCAGCTAGTTAGGAAGATTAGGGAAGTGGTTGGAGATCA-TCTTCTTTTCAAGATA 894
Query 898 CTCAAGAATCAGAGGCGTTAAAAACTGTAT-AGGAGGACGTTACAGATTT-ACCTGAATT 955
|||||||||||||||||||||||| ||| | ||||||||||||||||||| ||||||| |
Sbjct 895 CTCAAGAATCAGAGGCGTTAAAAAGTGTGTTAGGAGGACGTTACAGATTTTACCTGAAGT 954
Query 956 AGCCAAAGTTCAACAGCAGCTGATGATACGTAATGGAGT 994
|||||||||| ||||| |||||||||| |||||||||||
Sbjct 955 AGCCAAAGTTTAACAGAAGCTGATGATGCGTAATGGAGT 993
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41515856613
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5