BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70460.1
Length=2732
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476166 jgi|Araly1|476166|fgenesh2_kg.2__1296__AT1G70460.1 2612 0.0
Ahg926369 jgi|Araly1|926369|scaffold_201930.1 1469 0.0
Ahg472617 jgi|Araly1|472617|fgenesh2_kg.1__2571__AT1G23540.1 536 3e-151
> Ahg476166 jgi|Araly1|476166|fgenesh2_kg.2__1296__AT1G70460.1
Length=2503
Score = 2612 bits (1414), Expect = 0.0
Identities = 1634/1738 (94%), Gaps = 24/1738 (1%)
Strand=Plus/Plus
Query 997 GGCTATCAAGGGAAGACTATGGCCGGTTTTGCAATAGCCGGTTTCGCAGTCATCGCCTTG 1056
|||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||
Sbjct 773 GGCTATCAAGGGAAGACTATGGTCGGTTTTGCAGTAGCCGGTTTCGCAGTCATTGCCTTG 832
Query 1057 ATGGCCGTTGTGTTCTTAGTCAGAAGAAAGAAGAAGAGAAACATTGATGCCTACAGTGAC 1116
||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 833 ATGGCTGTTGTGTTCTTAGTCAGAAGAAAGAAAAAGAGAAACATTGATGCATACAGTGAC 892
Query 1117 TCACAATACTTGCCTCCTTCAAACTTCTCCATCAAATCAGATGGATTCTTATACGGTCAA 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 TCACAATACTTGCCTCCTTCAAACTTCTCCATCAAATCAGATGGATTCTTATACGGTCAA 952
Query 1177 AATCCTACAAAGGGATACTCTGGTCCTGGTGGTTACAATTCACAACAACAATCAAATTCC 1236
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 AATTCTACAAAGGTATACTCTGGTCCTGGTGGTTACAATTCACAACAACAATCAAATTCC 1012
Query 1237 GGAAACAGCTTCGGCAGCCAACGAGGAGGAGGAGGTTATACACGGTCAGGGAGCGCACCT 1296
||||| |||||||||||||||| |||||||||||||||||||||||||||| || |||
Sbjct 1013 GGAAATAGCTTCGGCAGCCAAC---GAGGAGGAGGTTATACACGGTCAGGGAGTGCGCCT 1069
Query 1297 GATTCAGCAGTGATGGGAAGTGGTCAAACACATTTCACATATGAAGAGCTAACGGACATA 1356
|||||||| ||||||||||||||||| ||||||||||| |||||||||||||| || |||
Sbjct 1070 GATTCAGCGGTGATGGGAAGTGGTCAGACACATTTCACCTATGAAGAGCTAACAGATATA 1129
Query 1357 ACAGAAGGATTTTCTAAGCATAACATACTTGGAGAAGGAGGTTTTGGTTGTGTGTATAAA 1416
|||||||||||||||||||| |||||||||||||||||||| ||||||||||| || |||
Sbjct 1130 ACAGAAGGATTTTCTAAGCAAAACATACTTGGAGAAGGAGGGTTTGGTTGTGTCTACAAA 1189
Query 1417 GGTAAATTAAATGATGGAAAACTTGTTGCTGTTAAGCAGCTTAAGGTTGGTAGCGGACAA 1476
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1190 GGTAAACTAAATGATGGAAAACTTGTTGCCGTTAAGCAGCTTAAGGTTGGTAGCGGACAA 1249
Query 1477 GGTGACCGTGAGTTTAAGGCGGAGGTTGAGATTATTAGCCGTGTTCATCATCGCCATTTG 1536
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1250 GGTGACCGTGAGTTTAAGGCAGAGGTTGAGATCATTAGCCGTGTTCATCATCGCCATTTG 1309
Query 1537 GTTTCTCTTGTTGGATACTGCATTGCGGATTCAGAGAGATTGCTTATCTATGAATATGTT 1596
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1310 GTTTCTCTTGTTGGCTACTGCATTGCGGATTCAGAGAGATTGCTTATCTATGAGTATGTT 1369
Query 1597 CCTAACCAAACATTGGAACATCATTTGCATGGGAAGGGAAGGCCAGTACTTGAATGGGCT 1656
||||||||||| ||||| |||||||||||||||||||||||||| || ||||||||||||
Sbjct 1370 CCTAACCAAACCTTGGAGCATCATTTGCATGGGAAGGGAAGGCCTGTCCTTGAATGGGCT 1429
Query 1657 AGGAGAGTCAGAATTGCTATAGGTTCTGCCAAAGGTTTGGCGTATTTACACGAAGACTGT 1716
|||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1430 AGGAGAGTTAGGATTGCTATAGGTTCTGCCAAAGGTTTGGCGTATTTGCACGAAGACTGT 1489
Query 1717 CACCCAAAAATCATTCACAGGGACATAAAGTCCGCTAACATCTTGCTGGACGATGA---- 1772
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1490 CACCCAAAAATCATTCACAGGGACATAAAGTCCGCAAACATCTTGCTGGACGATGACTTT 1549
Query 1773 -G-TTTGAAG--CT-CAGGTTGCTGACTTTGGACTTGCCAAACTCAATGATTCAACACAA 1827
| | ||||| | | ||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1550 GGCTCTGAAGTTTTACTTGTTGCTGACTTCGGACTTGCCAAACTCAATGATTCAACCCAA 1609
Query 1828 ACTCATGTATCAACTCGCGTTATGGGAACCTTCGGGTACTTGGCACCAGAATATGCACAA 1887
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1610 ACTCATGTATCAACTCGCGTTATGGGAACCTTTGGGTACTTGGCACCCGAATATGCACAA 1669
Query 1888 AGTGGAAAGCTGACTGATAGATCAGATGTTTTCTCGTTTGGGGTTGTTCTCTTAGAGCTT 1947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1670 AGTGGAAAGCTGACTGATAGATCAGATGTTTTCTCGTTTGGGGTTGTTCTCTTAGAGCTT 1729
Query 1948 ATAACAGGACGCAAACCTGTTGACCAATACCAGCCTTTGGGAGAAGAGAGTTTGGTTGAA 2007
||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1730 ATAACCGGACGCAAACCAGTTGACCAGTACCAGCCTTTGGGAGAAGAGAGTTTGGTTGAA 1789
Query 2008 TGGGCTCGTCCTCTGCTTCACAAAGCCATTGAGACCGGTGATTTCAGTGAACTAGTTGAT 2067
||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 1790 TGGGCTCGTCCACTGCTTCACAAAGCCATTGAGACTGGCGATTTCAGCGAACTAGTTGAT 1849
Query 2068 AGACGGCTCGAAAAGCATTATGTGGAGAATGAAGTTTTCAGAATGATTGAAACAGCTGCT 2127
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1850 AGACGGCTTGAAAAGCATTACGTGGAGAATGAAGTTTTCAGAATGATTGAAACAGCTGCT 1909
Query 2128 GCTTGTGTTAGGCATTCAGGTCCAAAACGTCCACGTATGGTTCAGGTTGTGAGAGCATTG 2187
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 1910 GCTTGTGTTAGGCATTCTGGTCCAAAACGTCCACGCATGGTTCAGGTTGTGAGAGCACTG 1969
Query 2188 GATAGTGAAGGGGACATGGGAGATATCAGCAATGGTAACAAAGTGGGACAAAGCAGTGCT 2247
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1970 GATAGTGAAGGGGACATGGGAGATATCAGCAACGGAAACAAAGTGGGACAAAGCAGTGCT 2029
Query 2248 TATGACTCTGGTCAGTATAATAATGACACCATGAAGTTCAGGAAAATGGCATTTGGTTTT 2307
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 2030 TATGACTCTGGTCAGTATAACAATGACACCATGAAGTTCAGGAAAATGGCGTTTGGTTTT 2089
Query 2308 GACGATAGCTCGGATTCCGGGATGTACAGTGGAGACTACTCTGTCCAAGACTCCCGGAAA 2367
||||||||||||||||||||||||||||||||||| |||| || ||||| ||||||||||
Sbjct 2090 GACGATAGCTCGGATTCCGGGATGTACAGTGGAGAGTACTTTGCCCAAGGCTCCCGGAAA 2149
Query 2368 GGATCCAACGGAGCTTCCTCTGAGTTCACAAGGAATGAAACCGAGAACCGAAACTTCAAT 2427
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 2150 GGATCCAACGGAGCTTCCTCTGAGTTCACGAGGAATGAATCCGAGAACCGAAACTTCAAT 2209
Query 2428 AACCGGCGCTACTGATCCAAAAATAGGTCAACTTATACCTAATCATCCCTCATGCTTGAG 2487
|||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 2210 AACCGGCGCTTCTGATCCAAAAATAGGTCAACTTATACCTTATTATCCCTCATGCTTGAG 2269
Query 2488 CTCTTTGTACAGCATTAATGCTCTCTTTGAA--TTTTTT-GTGTGAAGATACGTTTCTTG 2544
||||||||||||||||||||||||||||| | |||||| |||||| ||||| |||||||
Sbjct 2270 CTCTTTGTACAGCATTAATGCTCTCTTTGTACCTTTTTTTGTGTGA-GATACTTTTCTTG 2328
Query 2545 CTAGCCGCTACCTTTAGTTTTGCTCCATAATTCCCATTTGCCTCAAAAGACTTATTATAG 2604
||||| ||| ||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 2329 CTAGC---TACATTTAGTTTTGCTCCATAATGGCCATTTGCCTGAAAAGACTTATTATAG 2385
Query 2605 GTGAGAACAGAGAAAAGCAACCaaaaaagaaaaaGAACTCATAAAAGTTCTTAAAGAGTG 2664
||||||||||| ||||||||||||||| ||||||| |||||||| |||||| ||||||||
Sbjct 2386 GTGAGAACAGAAAAAAGCAACCAAAAAGGAAAAAGGACTCATAATAGTTCTCAAAGAGTG 2445
Query 2665 ATTT-GAATCT---T-GTTTGCTTTTGTTTGCTTCTCTGTGTTGAGTTTCGGATTTTT 2717
|||| |||||| | ||||||||||||||| |||||| |||||||||||||||||||
Sbjct 2446 ATTTTGAATCTGAATTGTTTGCTTTTGTTTGTTTCTCTTTGTTGAGTTTCGGATTTTT 2503
Score = 409 bits (221), Expect = 7e-113
Identities = 390/464 (84%), Gaps = 42/464 (9%)
Strand=Plus/Plus
Query 487 TCTCCTCCGCCAACTGTCTCATCCCCTCCTCCTCCGCCGCTTGATTCATCTCCTCCTCCG 546
|||||||||||| |||||||| || ||||||||||||| |||||||||||||||||||
Sbjct 296 TCTCCTCCGCCAGTTGTCTCAT--CC-CCTCCTCCGCCGCCTGATTCATCTCCTCCTCCG 352
Query 547 C-CGCCTGATTTAACCCCGCCGCCAAGTTC-T---C-CC-CCTCC-CC--CAGATGCTCC 596
| | |||||||||||||||||||||||| | | || || || || ||||||||||
Sbjct 353 CTTG-TTGATTTAACCCCGCCGCCAAGTTCTTCACCTCCACCCCCTCCGGCAGATGCTCC 411
Query 597 GCCGCCGATTCCCATCGTG-T---T-C-CCT----C--CACC-GATAGACTCACCGCCGC 643
||||||| ||||||| ||| | | | ||| | |||| || ||||||||||||||
Sbjct 412 GCCGCCGGTTCCCATTGTGTTACCTCCACCTCCACCTTCACCGGA-AGACTCACCGCCGC 470
Query 644 CCGAGTCCACCAACTCCCCTCCACCTCCAGAGGTGTTTGAACCACCACCGCCTCCGGCCG 703
| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 471 CGGAGTCCACCAACTCCCCTCCACCTCCGGAGGTGTTTGAACCACCACCGCCTCCTCCCA 530
Query 704 ATGAAGACGAAAGCCCTCCTGCTCCTCCACCTCCGGAACAATTACCTCCTCCAGCGTCTT 763
||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 531 ATG--CA-GAAAGCCCTCCTGCTCCTCCGCCTCCGGAACAATTACCTCCTCCAGCGTCTT 587
Query 764 CACCGCAAGGAGGACCCaaaaaaccaaaaaaaCACCATCCAGGACC-AGCCACATCTCCT 822
||||||||| |||||||||| ||| ||||||||| ||| ||||| | | | |||||||
Sbjct 588 CACCGCAAGCTGGACCCAAAACACCGGAAAAACACCCTCCGGGACCTA-CAAAATCTCCT 646
Query 823 CCTGCTCCTTCAGCACCAGCCACATCTCCTCCTGCTCCTCCAAACGCGCCGCCACGTAAC 882
| | |||||| |||| ||||||||| |||||||||||||| ||||| | ||||
Sbjct 647 --T-C------AGCACCCGCCATATCTCCTCCAGCTCCTCCAAACGCCCCGCCGCATAAC 697
Query 883 AGTTCCCACGCACTACCACCTAAGTCTACCGCTGCAGGTGGACC 926
| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 698 ACTTCTCACGCACTACCACCTAAGTCTACCGCTGCAGGTGGACC 741
Score = 156 bits (84), Expect = 1e-36
Identities = 129/150 (86%), Gaps = 5/150 (3%)
Strand=Plus/Plus
Query 309 aaTGTCGGACTCGCCAACTTCTTCTCCACCAGCACCATCCGCTGATTCCGCTCCGCCGCC 368
|||||| || ||||| | |||||||||||||||||| || || ||||||||||| || ||
Sbjct 163 AATGTCAGATTCGCCGAGTTCTTCTCCACCAGCACCGTCTGCGGATTCCGCTCCACCCCC 222
Query 369 GGATACCTC-ATCCGACGGATCTGCTGCTCCTCCACCTACGGATTCAGCACCACCTCCTA 427
||||| ||| | ||| |||||| | || |||||||||||||||||||||||||||||||
Sbjct 223 GGATAGCTCGA-CCGGCGGATC--C-GCCCCTCCACCTACGGATTCAGCACCACCTCCTA 278
Query 428 GTCCACCGGCTGATTCATCTCCGCCTCCAG 457
| || ||||||||||||||||| || ||||
Sbjct 279 GCCCGCCGGCTGATTCATCTCCTCCGCCAG 308
> Ahg926369 jgi|Araly1|926369|scaffold_201930.1
Length=1246
Score = 1469 bits (795), Expect = 0.0
Identities = 892/940 (95%), Gaps = 2/940 (0%)
Strand=Plus/Plus
Query 1324 ACACATTTCACATATGAAGAGCTAACGGACATAACAGAAGGATTTTCTAAGCATAACATA 1383
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 120 ACACATTTCACCTATGAAGAGCTAACGGACATAACAGAAGGATTTTCTAAGCAAAACATA 179
Query 1384 CTTGGAGAAGGAGGTTTTGGTTGTGTGTATAAAGGTAAATTAAATGATGGAAAACTTGTT 1443
|||||||||||||| ||||||| ||| || ||||||||| ||||||| ||||||||||||
Sbjct 180 CTTGGAGAAGGAGGGTTTGGTTATGTCTACAAAGGTAAACTAAATGACGGAAAACTTGTT 239
Query 1444 GCTGTTAAGCAGCTTAAGGTTGGTAGCGGACAAGGTGACCGTGAGTTTAAGGCGGAGGTT 1503
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 240 GCTGTTAAGCAGCTTAAGGTTGGTAGCAGACAAGGTGACCGTGAGTTTAAGGCGGAGGTT 299
Query 1504 GAGATTATTAGCCGTGTTCATCATCGCCATTTGGTTTCTCTTGTTGGATACTGCATTGCG 1563
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 300 GAGATTATTAGTCGTGTTCACCATCGCCATTTGGTTTCTCTTGTTGGATACTGCATTTCG 359
Query 1564 GATTCAGAGAGATTGCTTATCTATGAATATGTTCCTAACCAAACATTGGAACATCATTTG 1623
|||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct 360 GATTCAGAGAGATTGCTTATCTATGAGTATGTTCCTAACCAAACCTTGGAGCATCATTTG 419
Query 1624 CATGGGAAGGGAAGGCCAGTACTTGAATGGGCTAGGAGAGTCAGAATTGCTATAGGTTCT 1683
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 420 CATGGGAAGGGAAGGCCAGTCCTTGAATGGGCTAGGAGAGTCAGAATCGCTATAGGTTCT 479
Query 1684 GCCAAAGGTTTGGCGTATTTACACGAAGACTGTCACCCAAAAATCATTCACAGGGACATA 1743
|||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct 480 GCCAAAGGTTTGGCGTATTTGCATGAAGACTGTCATCCAAAAATCATTCACAGGGACATA 539
Query 1744 AAGTCCGCTAACATCTTGCTGGACGATGAGTTTGAAGCTCAGGTTGCTGACTTTGGACTT 1803
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 540 AAGTCCGCAAACATCTTGCTGGACGATGAGTTTGAAGTTCAGGTTGCTGACTTTGGACTT 599
Query 1804 GCCAAACTCAATGATTCAACACAAACTCATGTATCAACTCGCGTTATGGGAACCTTCGGG 1863
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 600 GCCAAACTCAATGATACAACACAAACTCATGTATCAACTCGCGTTATGGGAACCTTGGGG 659
Query 1864 TACTTGGCACCAGAATATGCACAAAGTGGAAAGCTGACTGATAGATCAGATGTTTTCTCG 1923
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 660 TACTTGGCACCAGAATATGCACAAAGTGGAAACCTGACTGATAGATCAGATGTTTTCTCG 719
Query 1924 TTTGGGGTTGTTCTCTTAGAGCTTATAACAGGACGCAAACCTGTTGACCAATACCAGCCT 1983
||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 720 TTTGGGGTTGTTCTCTTAGAGCTTATAACCGGACGCAAACCAGTTGACCAGTACCAGCCT 779
Query 1984 TTGGGAGAAGAGAGTTTGGTTGAATGGGCTCGTCCTCTGCTTCACAAAGCCATTGAGACC 2043
|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 780 ATGGGAGAAGAGAGTTTGGTTGAATGGGCTCGTCCACTGCTTGACAAAGCCATTGAGACC 839
Query 2044 GGTGATTTCAGTGAACTAGTTGATAGACGGCTCGAAAAGCATTATGTGGAGAATGAAGTT 2103
|| |||||||| |||||||||||||||||||| |||||| |||| |||||||| ||||||
Sbjct 840 GGCGATTTCAGCGAACTAGTTGATAGACGGCTGGAAAAGAATTACGTGGAGAAAGAAGTT 899
Query 2104 TTCAGAATGATTGAAACAGCTGCTGCTTGTGTTAGGCATTCAGGTCCAAAACGTCCACGT 2163
||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 900 TTCAGAATGATTGAAACGGCCGCTGCTTGTGTTAGGCATTCTGGTCCAAAACGTCCACGC 959
Query 2164 ATGGTTCAGGTTGTGAGAGCATTGGATAGTGAAGGGGACATGGGAGATATCAGCAATGGT 2223
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 960 ATGGTTCAGGTTTTGAGAGCACTGGATAGTGAAGGGGACATGGGAGATATCAGCAATGG- 1018
Query 2224 AACAAA-GTGGGACAAAGCAGTGCTTATGACTCTGGTCAG 2262
|| ||| |||||||||||||||| |||||| |||||||||
Sbjct 1019 AAGAAAAGTGGGACAAAGCAGTGGTTATGAATCTGGTCAG 1058
> Ahg472617 jgi|Araly1|472617|fgenesh2_kg.1__2571__AT1G23540.1
Length=2282
Score = 536 bits (290), Expect = 3e-151
Identities = 662/833 (79%), Gaps = 59/833 (7%)
Strand=Plus/Plus
Query 991 GGTGGCGGCTATCAAGGGAAGACTATGGCCGGTTTTGCAATAGCCGGTTTCGC-AGTCAT 1049
|||||||||||||||||||||||||||| ||| | || |||| |||||||| | ||||
Sbjct 685 GGTGGCGGCTATCAAGGGAAGACTATGGTTGGTATGGCTGTAGCGGGTTTCGCGA-TCAT 743
Query 1050 CGC-CTTGATGGCCGTTGTGTTCTTAGTCAGAAGAAAGAAGAAGAGAAACATTGAT-GCC 1107
|| ||| || || |||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 744 GGCGCTT-ATAGCGGTTGTGTTCTTAGTGAGAAGAAAGAAGAAGAGAAACATTGATAGT- 801
Query 1108 TACAGTGACTCACAATACTTGCCTCCTTCAAACTTCTCCATCAAATCAGATGGATTCTTA 1167
|| | | ||||||| |||||||| | | | || ||||| | ||||||||||||||||||
Sbjct 802 TATAATCACTCACAGTACTTGCCACATCCCAATTTCTCTGTTAAATCAGATGGATTCTTA 861
Query 1168 TACGGTCAAAATCCTAC--AAAGGGATACTC-T--GGTCCTGGTGGTTACAAT-TCACAA 1221
||||||||| |||| | ||||| |||||| | ||||||||||||| |||| | ||||
Sbjct 862 TACGGTCAAGATCC-AGGTAAAGG-ATACTCCTCTGGTCCTGGTGGTT-CAATGT-ACAA 917
Query 1222 --CA-A-CAATCAA-ATTCC-----GG-AAACAGCTTCGGCAGCCAACGAGGAGGAGGAG 1270
|| | ||| ||| ||||| || |||||||||||||| | | | ||| | ||
Sbjct 918 TTCACAGCAA-CAACATTCCTCTATGGGAAACAGCTTCGGCA-C-A-C-AGG-GT-GGTT 970
Query 1271 GT--T-AT-A-CACG-G---TC-AGGGAGCGCACCTGATTCAGC-AGTGA-TGGGAAGTG 1318
| | || | || | || || | || ||||||| || || | | | | |||||||
Sbjct 971 ATCCTCATCATCAAATGCAATCCAGTG-GCACACCTGACTCTGCTA-T-ACTCGGAAGTG 1027
Query 1319 GTCAAACACATTTCACATATGAAGAGCTAACGGACATAACAGAAGGATTTTCTAAGC-AT 1377
| || |||||||||| || |||||||| | || |||||| |||| ||| || || |
Sbjct 1028 GCCAGACACATTTCAGTTACGAAGAGCTTGCAGAGATAACACAAGGCTTTGCTC-GCCAA 1086
Query 1378 AACATACTTGGAGAAGGAGGTTTTGGTTGTGTGTATAAAGGTAAATTAAATGATGGAAAA 1437
||||| ||||||||||| || ||||| ||||| |||||||||| ||| | ||||| |||
Sbjct 1087 AACATTCTTGGAGAAGGCGGATTTGGATGTGTCTATAAAGGTACATTGCAGGATGGTAAA 1146
Query 1438 CTTGTTGCTGTTAAGCAGCTTAAGGTTGGTAGCGGACAAGGTGACCGTGAGTTTAAGGCG 1497
||||||| |||||||||||||| | ||| || ||||||||||||||||| || |||||
Sbjct 1147 GTTGTTGCGGTTAAGCAGCTTAAAGCTGGAAGTGGACAAGGTGACCGTGAATTCAAGGCA 1206
Query 1498 GAGGTTGAGATTATTAGCCGTGTTCATCATCGCCATTTGGTTTCTCTTGTTGGATACTGC 1557
||||||||||| || ||||| ||||| |||||||||||||| ||||| || || ||||||
Sbjct 1207 GAGGTTGAGATCATCAGCCGCGTTCACCATCGCCATTTGGTCTCTCTGGTCGGTTACTGC 1266
Query 1558 ATTGCGGATTCAG-AGAGATTGCTTATCTATGAATATGTTCCTAACCAAACATTGGAACA 1616
||| |||| || | ||||||||||||||||| |||||| |||| ||||| ||||| ||
Sbjct 1267 ATTTCGGAC-CAACATAGATTGCTTATCTATGAGTATGTTTCTAATCAAACCTTGGAGCA 1325
Query 1617 TCATTTGCATGGGAAGGGAAGGCCAGTACTT-GAATGGGCTAGGAGAGTCAGAATTGCTA 1675
||||||||| || ||||| |||||| || || ||| ||| ||||||| | || ||||
Sbjct 1326 TCATTTGCACGGAAAGGGTTTGCCAGTT-TTAGAGTGGTCTAAGAGAGTCCGGATCGCTA 1384
Query 1676 TAGGTTCTGCCAAAGGTTTGGCGTAT-TTACACGAAGACTGTCACCCAAAAATCATTCAC 1734
|||| || |||||||| ||||||||| || |||||||||||||| || |||||||| |||
Sbjct 1385 TAGGATCAGCCAAAGGGTTGGCGTATCTT-CACGAAGACTGTCATCCGAAAATCATACAC 1443
Query 1735 AGGGACATAAAGTCCGCTAACAT-CTTGCTGGACGATGAGTTTGAAGCTCAGG 1786
|||||||||||||| || || || ||| || || ||||| | |||||||||||
Sbjct 1444 AGGGACATAAAGTCAGCAAATATTCTT-CTAGATGATGAATATGAAGCTCAGG 1495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103072202970
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5