BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70470.1
Length=765
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476167 jgi|Araly1|476167|fgenesh2_kg.2__1297__AT1G70470.1 904 0.0
> Ahg476167 jgi|Araly1|476167|fgenesh2_kg.2__1297__AT1G70470.1
Length=682
Score = 904 bits (489), Expect = 0.0
Identities = 609/664 (92%), Gaps = 19/664 (3%)
Strand=Plus/Plus
Query 80 ATAAAATAAAATGGGAGACCAACCACAAGAGTTTCAGCAA-C-C-ACAAGTGTATCCATC 136
|||||| |||||||||||||||||||||||| |||||||| | | | ||||||||||||
Sbjct 34 ATAAAA-AAAATGGGAGACCAACCACAAGAGATTCAGCAACCTCTTCTAGTGTATCCATC 92
Query 137 TACTTCTTCTTCTACTTCATCTTCTTTCTCGCCTTCATCCTCCGGTTCAAGTGGCTCGTT 196
||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 93 TACTTCTTCTTCTTCTTCATCTTCTTCCTCGCCTTCATCCTCCGTTTCAAGTGGCTCGTT 152
Query 197 TGGTACAGCATTCATAGTTCTAGCCGCAATTCTTGTTC-TGGCAGCACTGGCTTGTGTGT 255
|||||||||||||||||||||||||||||| |||| || |||||||| ||||||||||||
Sbjct 153 TGGTACAGCATTCATAGTTCTAGCCGCAATCCTTG-TCTTGGCAGCAATGGCTTGTGTGT 211
Query 256 TTGGAAGACTATGCAACCGCGGTGGAAAGCAACACAAAGACAAAAACAACAACAAAGCTT 315
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 212 TTGGAAGACTATGCAACCGCGGTGGAAAGCAACACAAAGACAAAAACAACAACAAAACTT 271
Query 316 CGAAGCATGAGAAACCATCGTCAAAGAAGAGCCGTGAGATTAGACCTGTGGAGCGTGAAC 375
| || ||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 272 CCAAACATGAGAAACCGTCGTCAAAGAAGAGCCGTGAGATCAGACCTGTGGAGCGTGAGC 331
Query 376 CAAGAGAAAGAGGTGATGTGGAGTTTGGTTTCGATATGAAGCGGCCTGGTCCTATGAGCA 435
||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||| ||
Sbjct 332 CAAGAGAGAGAGGTGATGTGGAGTTTGGGTTCGATATGAAGCGGCCTGGTCCGATGAACA 391
Query 436 AACCCACTGGTCGAAACGGAGGGGACATAGAATTTGGGTTTGATAACAAgagaggaggag 495
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 392 AACCCACTGGTCGAAACGGAGGGGACATAGAATTTGGCTTTGATAACAAGAGAGGAGGAG 451
Query 496 gtggtggtggaggaggtggaggaaaaggagggaAAAGACCACCTCCGGTTATATATTAAC 555
| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 452 GAGGTGGAGGAGGAGGAGGAGGAAAAGGAGGGAAAAGACCACCTCCGGTTATATATTAAC 511
Query 556 CATGTGTAAGGTGACCTCAGACACGGAGGTTTCCGACTTCAAGCTCCGGTCAGAACATTG 615
||||||||||| ||| ||||||||| |||| ||||||||||| ||||||||||||| ||
Sbjct 512 CATGTGTAAGGCCACCGCAGACACGGTGGTT-CCGACTTCAAGATCCGGTCAGAACACTG 570
Query 616 TCTTAATAAGACAAGAGAATTCATCAATGcttgttcactttatcttattcttgcttgttt 675
||||||||||||||||||||| |||| ||||| ||||||||||| || | | |||||||
Sbjct 571 TCTTAATAAGACAAGAGAATTTATCA-TGCTTCTTCACTTTATCCTAAT-T--CTTGTTT 626
Query 676 gtttttggtcttgttttgggtcgtttggttttgtttCATATGGGTATGAAACTTAGGTAT 735
|||| | | || | |||||||||||||||||||||||| |||||| |||||| |||
Sbjct 627 GTTT--G-T-TT-T---GGGTCGTTTGGTTTTGTTTCATATTGGTATGGAACTTAAATAT 678
Query 736 CAAA 739
||||
Sbjct 679 CAAA 682
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28210958580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5