BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70480.2
Length=1409
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926372 jgi|Araly1|926372|scaffold_201933.1 1498 0.0
> Ahg926372 jgi|Araly1|926372|scaffold_201933.1
Length=1003
Score = 1498 bits (811), Expect = 0.0
Identities = 933/992 (94%), Gaps = 7/992 (1%)
Strand=Plus/Plus
Query 228 ACACTGTGCAG-GTCAGAAATGGGCAATCCGGGATCAGACACAGAGAGAAACAAGGGAAA 286
||| ||||||| | | ||||||||||||| || |||||||| |||||||||||| ||||
Sbjct 3 ACATTGTGCAGAG-AATAAATGGGCAATCCTGGTTCAGACACGGAGAGAAACAAGAGAAA 61
Query 287 TGTGGTCTCAAGTGTGTTTGATCCTGCACTCTCTCGATTCGTTGGATTTTCCCAGAAACT 346
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 62 TGTGGTCTCAAGTGTGTTTGATCCTGCACTCTCTCGATTCGTTGGATTTTCTCAGAAACT 121
Query 347 CCAAACTCGTCTTAAGTCCCAGCTGAAGAATTTGACAGATGATAAGCATGGGATTGGTTC 406
||||||| |||||||||||||||| |||||||||| || |||||||||||||||||||||
Sbjct 122 CCAAACTTGTCTTAAGTCCCAGCTTAAGAATTTGAAAGTTGATAAGCATGGGATTGGTTC 181
Query 407 TTCATGGAGGCAAGATAAAGGAAAC-TCATCGATCTCCATGCAAATTGATCTGGAGAAAC 465
|||||||||||||||||||| || || |||| ||||||| ||||||||||||||||||
Sbjct 182 TTCATGGAGGCAAGATAAAG-AAGGGTCGTCGAGCTCCATGGAAATTGATCTGGAGAAAC 240
Query 466 AGTTAGAT-TGTTGGAGGGAAAACCCTTCGTGGACTGATCAGATCCCAGTCGTTAAGGTG 524
|||||||| ||| |||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 AGTTAGATATGT-GGAGAGAAAACCCTTCTTGGACTGATCAGATCCCAGTCGTTAAGGTG 299
Query 525 GGTATTCCAAAAGGATCGCTTTGCAATCTTAAAGCCGAGGTGAATGTTGGTTTACCTCCT 584
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 300 AGTATTCCAAAAGGATCGCTTTGCAATCTCAAAGCCGAGGTGAATGTTGGTTTACCTCCT 359
Query 585 GATGCAGTCTATAACATTGTAATTGACCCTGACAATAGAAGAGTCTTCAAGAATATCAAG 644
|||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| |||
Sbjct 360 GATGCAGTCTATAACATTGTGATTGACCCTGACAACAGAAGAGTCTTCAAAAATATTAAG 419
Query 645 GAGGTTATGTCGCGGAAAGTATTGGTAGATGACGGGTTAAGGCAAGTGGTGGAAGTTGAA 704
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct 420 GAGGTTATGTCGCGGAAAGTATTGGTAGATGAAGGGTTAAGGCAAGTTGTGGAAGTAGAA 479
Query 705 CAAGCAGCTTTGTGGAGATTTCTCTGGTGGTCAGGAACAATCTCAGTTCATGTCTTGGTG 764
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CAAGCAGCTCTGTGGAGATTTCTCTGGTGGTCAGGAACAATCTCAGTTCATGTCTTGGTG 539
Query 765 GATCAGGATCGGGCAGATCACTCTATGAAATTCAAGCAAGTGAAAAGTGGATTCATGAAG 824
|||||| | || |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 540 GATCAGAACCGTGCAGATCACTCTATGAAATTCAAGCAAGTGAAGAGTGGATTCATGAAG 599
Query 825 AGATTCGAAGGAAGCTGGCAAGTAAAGCCTTTGTTTGTGGATGAACATATGTGCGATCGT 884
||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 600 AGATTTGAAGGAAGCTGGCAAGTTAAGCCTTTGTTTGTGGACGAACATATGTGTGATCGT 659
Query 885 TTGAAACCGAAAACGCTGGAGGAGTATAACAGGTGCACTGGAGGTAAAGGGAGGATCGGA 944
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 660 TTGAAACCGAAAACGCTGGAGGAGTATAACCGGTGCACTCGAGGTAAAGGGAGGATCGGA 719
Query 945 TCTAAGGTAACGCTGGACCAGCTAATACAGCCAGCGATTGTTCCACCTCCGCCCATTTCT 1004
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 720 TCTAAGGTTACGCTGGACCAGCTAATACAGCCAGCAATTGTTCCACCTCCGCCCATTTCT 779
Query 1005 TGGTATCTCAGAGGAATCACGGCTAAGACGACAGAGATGCTTATCCATGACTTGTTGGCT 1064
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 780 TGGTATCTCAGAGGAATCACGGCTAAAACGACAGAGATGCTCATCCATGACTTGTTGGCT 839
Query 1065 GAGACCGCCAGGATCCGTGCAGCTGGAGTAATGGAGGATGGTCACTCGCCCGATGAGCAA 1124
|||||||||||||||||| |||| |||| ||||||||||||||||||||| ||| |||||
Sbjct 840 GAGACCGCCAGGATCCGTACAGCCGGAGAAATGGAGGATGGTCACTCGCCGGATAAGCAA 899
Query 1125 CGGATTGGCACACCTGGAGATATAAAAGAAAGATGGTCTGCACATAGAAGAACATCAAGG 1184
|||||||| |||||||| |||||||| ||||||||| |||||||||||||||||||||||
Sbjct 900 CGGATTGGGACACCTGGGGATATAAAGGAAAGATGGGCTGCACATAGAAGAACATCAAGG 959
Query 1185 AGACGACGCAATGATTTGTGTTAA-GTCACAG 1215
|||||||||||||||||||||||| |||||||
Sbjct 960 AGACGACGCAATGATTTGTGTTAAAGTCACAG 991
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52678808835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5