BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70490.1
Length=918
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476172 jgi|Araly1|476172|fgenesh2_kg.2__1302__AT1G70490.1 1277 0.0
Ahg472612 jgi|Araly1|472612|fgenesh2_kg.1__2566__AT1G23490.1 745 0.0
Ahg919852 jgi|Araly1|919852|scaffold_101133.1 590 7e-168
Ahg925013 jgi|Araly1|925013|scaffold_200574.1 145 7e-34
> Ahg476172 jgi|Araly1|476172|fgenesh2_kg.2__1302__AT1G70490.1
Length=900
Score = 1277 bits (691), Expect = 0.0
Identities = 858/930 (92%), Gaps = 45/930 (5%)
Strand=Plus/Plus
Query 4 CGTCATCGCGtttctcttaagcttctctcacatttctctttcaaatttcttcgagtctct 63
|||| |||||||||||||||||||||||| | | ||||||||||||||| ||||||||||
Sbjct 1 CGTCGTCGCGTTTCTCTTAAGCTTCTCTCTC-TCTCTCTTTCAAATTTCGTCGAGTCTCT 59
Query 64 ctcgctctctccgtttcttcgcggtctctctctctcagatctctcCGAAACATTCTTCGT 123
|||||||||||||||||||||||| |||| | |||| | ||||||||
Sbjct 60 CTCGCTCTCTCCGTTTCTTCGCGG--------TCTC-G--CTCT------C-TTCTTCGT 101
Query 124 AGTGAAGCAAAATGGGGTTGAGTTTCGCCAAGCTGTTTAGCAGGCTTTTTGCCAAGAAGG 183
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 102 AGTGAAGAAAAATGGGGTTGAGTTTCGCCAAGCTGTTTAGCAGGCTTTTTGCCAAGAAGG 161
Query 184 AGATGCGAATTCTGATGGTTGGTCTTGATGCTGCTGGTAAGACCACAATCTTGTACAAGC 243
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 162 AGATGCGAATTCTGATGGTTGGTCTTGATGCTGCTGGTAAGACCACTATTTTGTACAAGC 221
Query 244 TCAAGCTCGGAGAGATTGTCACCACCATCCCTACTATTGGTTTCAATGTGGAAACTGTGG 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 222 TCAAGCTCGGAGAGATTGTCACCACCATCCCTACTATTGGTTTCAATGTGGAAACTGTGG 281
Query 304 AATACAAGAACATTAGTTTCACCGTGTGGGATGTCGGGGGTCAGGACAAGATCCGTCCCT 363
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 AATACAAGAACATCAGTTTCACCGTGTGGGATGTCGGGGGTCAGGACAAGATCCGTCCCT 341
Query 364 TGTGGAGACACTACTTCCAGAACACTCAAGGTCTAATCTTTGTTGTTGATAGCAATGACA 423
|||||||||||||||||||||||||||| ||||| |||||||| || |||||||| ||||
Sbjct 342 TGTGGAGACACTACTTCCAGAACACTCAGGGTCTTATCTTTGTCGTGGATAGCAACGACA 401
Query 424 GAGACAGAGTTGTTGAGGCTCGAGATGAACTCCACAGGATGCTGAATGAGGACGAGCTGC 483
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 402 GAGACAGAGTTGTTGAGGCTAGAGATGAGCTCCACAGGATGCTGAATGAGGACGAGCTGC 461
Query 484 GTGATGCTGTGTTGCTTGTGTTTGCCAACAAGCAAGATCTTCCAAATGCTATGAACGCTG 543
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 462 GTGATGCTGTGTTGCTTGTGTTTGCCAACAAGCAAGATCTTCCAAATGCGATGAACGCCG 521
Query 544 CTGAAATCACAGATAAGCTTGGCCTTCACTCCCTCCGTCAGCGTCATTGGTATATCCAGA 603
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 522 CTGAAATCACAGATAAGCTTGGCCTTCATTCCCTCCGTCAGCGTCATTGGTACATCCAGA 581
Query 604 GCACATGTGCCACTTCAGGTGAAGGGCTTTATGAAGGTCTGGACTGGCTCTCCAACAACA 663
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 GCACATGTGCCACATCAGGTGAAGGGCTTTATGAAGGTCTGGACTGGCTCTCCAACAACA 641
Query 664 TCGCTGGCAAGG---CAT--G-ATGA-G-GG-AGAAATTGCGTTGCATCGAGATGATTCT 714
|||| ||||||| ||| | |||| | || |||||| | |||||||||||||||||||
Sbjct 642 TCGCCGGCAAGGTAACATAAGCATGATGAGGGAGAAATGGTGTTGCATCGAGATGATTCT 701
Query 715 GTCTGCTGTGTTGGGATCTCTCTCTGTCTTG-ATGCAAGAGAGATTATAAATATTATCTG 773
||||||||||||||||| ||||| || ||| ||||||||||||||||||||||||||||
Sbjct 702 GTCTGCTGTGTTGGGATATCTCT--GT-TTGGATGCAAGAGAGATTATAAATATTATCTG 758
Query 774 AACCtttttgcttttttGGGTATGTGAATGTTTCT--T--ATTGTGCAAGTAGATGGTCT 829
|||||||||||| || |||||||||||||||||| | |||||||||||||||| |||
Sbjct 759 AACCTTTTTGCTATT--GGGTATGTGAATGTTTCTGGTTGATTGTGCAAGTAGATG-TCT 815
Query 830 TGTACCTAAAAATTTACTAGAAGAACCCTTTT-AAATAGCTTTCGTGTATTGTGCCTGGA 888
||||||||||||| |||||||||||||||||| |||||| || || ||||| ||||||
Sbjct 816 TGTACCTAAAAATCTACTAGAAGAACCCTTTTTAAATAG-TT--GT--ATTGTACCTGGA 870
Query 889 TTAATATGATTGATTGTTTTGCTTTCTTGT 918
||||||||||||||||||||||||||||||
Sbjct 871 TTAATATGATTGATTGTTTTGCTTTCTTGT 900
> Ahg472612 jgi|Araly1|472612|fgenesh2_kg.1__2566__AT1G23490.1
Length=931
Score = 745 bits (403), Expect = 0.0
Identities = 538/603 (89%), Gaps = 9/603 (1%)
Strand=Plus/Plus
Query 88 tctctctctctcagatctctcCGAAACATT--C-T--TCGT-AGTGAAGCAAAATGGGGT 141
|||||||||||||||| ||||||||| || | | || ||||||||| ||||| |
Sbjct 35 TCTCTCTCTCTCAGATAGCTCCGAAACTTTCACGTAGAGGTAAGTGAAGCAGGATGGGTT 94
Query 142 TGAGTTTCGCCAAGCTGTTTAGCAGGCTTTTTGCCAAGAAGGAGATGCGAATTCTGATGG 201
|| ||||||||||| |||||| ||||||||||||||| ||||||||||||||| ||||
Sbjct 95 TGTCATTCGCCAAGCTTTTTAGCCGGCTTTTTGCCAAGAGGGAGATGCGAATTCTCATGG 154
Query 202 TTGGTCTTGATGCTGCTGGTAAGACCACAATCTTGTACAAGCTCAAGCTCGGAGAGATTG 261
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 155 TTGGTCTTGATGCTGCTGGTAAGACCACCATTTTGTACAAGCTCAAGCTCGGAGAGATTG 214
Query 262 TCACCACCATCCCTACTATTGGTTTCAATGTGGAAACTGTGGAATACAAGAACATTAGTT 321
| |||||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct 215 TAACCACCATTCCTACTATTGGGTTCAATGTGGAAACTGTGGAGTACAAGAACATCAGTT 274
Query 322 TCACCGTGTGGGATGTCGGGGGTCAGGACAAGATCCGTCCCTTGTGGAGACACTACTTCC 381
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 275 TCACAGTGTGGGATGTCGGGGGTCAGGACAAGATCCGTCCCTTGTGGAGGCACTACTTCC 334
Query 382 AGAACACTCAAGGTCTAATCTTTGTTGTTGATAGCAATGACAGAGACAGAGTTGTTGAGG 441
|||||||||||||||| |||||||| || || ||||||||||||||| | ||||||||||
Sbjct 335 AGAACACTCAAGGTCTTATCTTTGTGGTGGACAGCAATGACAGAGACCGTGTTGTTGAGG 394
Query 442 CTCGAGATGAACTCCACAGGATGCTGAATGAGGACGAGCTGCGTGATGCTGTGT-TGCTT 500
|| |||||||| | ||| | |||||||||||||| ||||||||||||||||| | ||||
Sbjct 395 CTAGAGATGAATTGCACCGAATGCTGAATGAGGATGAGCTGCGTGATGCTGT-TCTGCTC 453
Query 501 GTGTTTGCCAACAAGCAAGATCTTCCAAATGCTATGAACGCTGCTGAAATCACAGATAAG 560
|||||||| |||||||| ||||| |||||||||||||| || ||||||||||| ||||||
Sbjct 454 GTGTTTGCTAACAAGCAGGATCTCCCAAATGCTATGAATGCAGCTGAAATCACTGATAAG 513
Query 561 CTTGGCCTTCACTCCCTCCGTCAGCGTCATTGGTATATCCAGAGCACATGTGCCACTTCA 620
||||| || ||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 514 CTTGGTCTCCACTCTCTCCGTCAGCGTCACTGGTACATCCAGAGCACATGTGCCACTTCA 573
Query 621 GGTGAAGGGCTTTATGAAGGTCTGGACTGGCTCTCCAACAACATCGCTGGCAAGGCAT-G 679
||||| |||||||| |||||||| |||||| | ||||||||||| || |||||||| | |
Sbjct 574 GGTGAGGGGCTTTACGAAGGTCTTGACTGGTTGTCCAACAACATTGCCGGCAAGGCGTAG 633
Query 680 ATG 682
|||
Sbjct 634 ATG 636
> Ahg919852 jgi|Araly1|919852|scaffold_101133.1
Length=586
Score = 590 bits (319), Expect = 7e-168
Identities = 470/542 (87%), Gaps = 14/542 (3%)
Strand=Plus/Plus
Query 134 AATGGGG--TTGAGTTTCGCCAAGCTGTTT-AGCAGGCTTTTTGCCAAGAAGGAGATGCG 190
||||||| || | ||| || ||||| ||| ||| ||||||| |||||||||||||||||
Sbjct 20 AATGGGGCTTTCA-TTT-GCAAAGCT-TTTCAGCCGGCTTTTCGCCAAGAAGGAGATGCG 76
Query 191 AATTCTGATGGTTGGTCTTGATGCTGCTGGTAAGACCACAATCTTGTACAAGCTCAAGCT 250
||| || ||||| |||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 77 AATCCTTATGGTGGGTCTTGATGCTGCTGGTAAGACCACCATTTTGTACAAGCTCAAGCT 136
Query 251 CGGAGAGATTGTCACCACCATCCCTACTATT-GGTTTCAATGTGGAAACTGTGGAATACA 309
|| |||||||| |||||||| ||||| ||| ||||| |||||||| || || || ||||
Sbjct 137 TGGTGAGATTGTTACCACCATTCCTACCATTGGGTTT-AATGTGGAGACGGTTGAGTACA 195
Query 310 AGAACATTAGTTTCACCGTGTGGGATGTCGGGGGTCAGGACAAGATCCGTCCCTTGTGGA 369
| ||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 196 AAAACATCAGCTTCACCGTCTGGGATGTCGGGGGTCAGGACAAGATCCGTCCCTTGTGGA 255
Query 370 GACACTACTTCCAGAACACTCAAGGTCTAATCTTT-GTTGTTGATAGCAATGACAGAGAC 428
| ||||||||||| ||||| |||||||| || ||| || |||||||||||||||||||||
Sbjct 256 GGCACTACTTCCAAAACACACAAGGTCTGAT-TTTCGTGGTTGATAGCAATGACAGAGAC 314
Query 429 AGAGTTGTTGAGGCTC-GAGATGAACTCCACAGGATGCTGAATGAGGACGAGCTGCGTGA 487
| |||||||| || | |||||||||| ||||||||| ||||||| || ||||| || ||
Sbjct 315 CGTGTTGTTGAAGC-CAGAGATGAACTTCACAGGATGTTGAATGAAGATGAGCTACGGGA 373
Query 488 TGCTGTGTTGCTTGTGTTTGCCAACAAGCAAGATCTTCCAAATGCTATGAACGCTGCTGA 547
||| || |||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 374 TGCAGTATTGCTTGTGTTTGCCAACAAGCAAGATCTTCCAAATGCAATGAATGCTGCTGA 433
Query 548 AATCACAGATAAGCTTGGCCTTCACTCCCTCCGTCAGCGTCATTGGTATATCCAGAGCAC 607
|| || |||||||||||||||||||| ||||| || || || ||||| || || |||||
Sbjct 434 GATAACTGATAAGCTTGGCCTTCACTCACTCCGGCAACGCCACTGGTACATACAAAGCAC 493
Query 608 ATGTGCCACTT-CAGGTGAAGGGCTTTATGAAGGTCTGGACTGGCTCTCCAACAACATCG 666
||| || ||| | ||||||||||| |||||||||||||| ||||| ||||||||||| |
Sbjct 494 ATGCGCAACTAGC-GGTGAAGGGCTCTATGAAGGTCTGGATTGGCTTTCCAACAACATTG 552
Query 667 CT 668
||
Sbjct 553 CT 554
> Ahg925013 jgi|Araly1|925013|scaffold_200574.1
Length=436
Score = 145 bits (78), Expect = 7e-34
Identities = 115/131 (88%), Gaps = 9/131 (7%)
Strand=Plus/Plus
Query 166 GGCTTTTTGCCAAGAAGGAGATGCG-A--ATTCT-GATGGTTGGTCTTGATGCTGCTGGT 221
||||||||||||||||||||||||| | || | | |||||||||||||||||||||||
Sbjct 24 GGCTTTTTGCCAAGAAGGAGATGCGCATCCTTATGGTTGGTTGGTCTTGATGCTGCTGGT 83
Query 222 AAGACCACAATCTTGTACAAGCTCAAGCTCGG--AGA--GATTGTCACCACCATCCCTAC 277
|||||||| || |||||||||||||||||||| ||| |||||||||||||||||| ||
Sbjct 84 AAGACCACCATTTTGTACAAGCTCAAGCTCGGTGAGATCGATTGTCACCACCATCCCCAC 143
Query 278 TATTGGTTTCA 288
|||| |||||
Sbjct 144 CATTG-TTTCA 153
Score = 134 bits (72), Expect = 1e-30
Identities = 106/123 (86%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 485 TGATGCTGTGTTGCTTGTGTTTGCCAACAAGCAAGATCTTCCAAATGCTATGAACGCTGC 544
|||||| || ||||||||||||||||||| || ||||||||||| || ||||| |||||
Sbjct 236 TGATGCAGTACTGCTTGTGTTTGCCAACAAACAGGATCTTCCAAACGCAATGAATGCTGC 295
Query 545 TGAAATCACAGATAAGCTTGGCCTTCACTCCCTCCGTCAGCGTCATTGGTATATCCAGAG 604
|||||| || ||||||||||| || ||||| ||||| || ||||| ||||| ||||||||
Sbjct 296 TGAAATAACTGATAAGCTTGGACTCCACTCTCTCCGGCAACGTCACTGGTACATCCAGAG 355
Query 605 CAC 607
|||
Sbjct 356 CAC 358
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34043764881
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5