BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70500.1
Length=1407
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908642 jgi|Araly1|908642|Al_scaffold_0002_1723 2097 0.0
Ahg313215 jgi|Araly1|313215|fgenesh1_pm.C_scaffold_1001995 217 2e-55
Ahg494865 jgi|Araly1|494865|fgenesh2_kg.8__681__AT5G48140.1 56.5 5e-07
> Ahg908642 jgi|Araly1|908642|Al_scaffold_0002_1723
Length=1398
Score = 2097 bits (1135), Expect = 0.0
Identities = 1321/1410 (94%), Gaps = 15/1410 (1%)
Strand=Plus/Plus
Query 1 ATGATTAAACCCTTTATTATTTCTCTGTTTGCTCTGTTGATGGTAGCTTCTTATGGAGCT 60
|||| ||| ||||| || |||| |||||||||||||| ||||||||||||||| | |
Sbjct 1 ATGAATAAGCCCTTCATCGTTTCCCTGTTTGCTCTGTTAATGGTAGCTTCTTAT-G-G-- 56
Query 61 ACAGGAAAAATGTTGTTCAAG-GAACTTGACATTCTTGGGAAGCTTGAGAACCTCGATGT 119
| | ||| | || | | || |||||||||||||||| |||||||||||||||||||||
Sbjct 57 A-A--AAACA--TTCTAC-AGAGAACTTGACATTCTTGAGAAGCTTGAGAACCTCGATGT 110
Query 120 ACCTGAGGATGATATTGAGGATGATGTGACCTTCTTTGATTTCTCGTCGTTTACAAGCCA 179
|||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 111 ACCTGAGGATGAGATTGAGGATGATGTGACGTTCTTTGATTTCTCGTCATTTACAAGCCA 170
Query 180 ATATTCTGGTAAGAATCTGGTGAATGTGGATAGCTTTAATGCATCTGGAGATGGAGTTTC 239
||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 171 ATATTCTGGTAAGAATCTGGTGAATGTGGATAGCTTTGGTGCAGCTGGAGATGGAGTTTC 230
Query 240 TGATGATACTCAGGCATTTATAAGAGCTTGGACCATGGCCTGCTCTGCACCAAACTCTGT 299
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 231 TGATGATACTCAGGCATTTATAAGCGCTTGGACCATGGCCTGCTCTGCACCAAACTCTGT 290
Query 300 TTTATTGGTTCCACAAGGACGTAGCTATTTAGTAAATGCGACGAAATTCGATGGTCCATG 359
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 291 GTTATTGGTTCCACAAGGACGTAGCTATTTAGTAAATGCAACGAAATTCGATGGTCCATG 350
Query 360 TCAAGAAAAATTGATCATTCAGATTGATGGAACAATCATAGCACCAGATGAGCCTAGCCA 419
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||
Sbjct 351 TCAAGAAAAATTGATCATTCAGATTGATGGAACGATCGTAGCACCAGATGAGCCTAGTCA 410
Query 420 ATGGGACCCGAAATTCCCAAGGAAT-TGGCTTCAATTTTCCAAACTCCAAGGAGTTGTAT 478
||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||
Sbjct 411 ATGGGACCCGAAATTCCAAAGG-GTCTGGCTTCAATTTTCCAAACTCCAAGGAGTTGTAT 469
Query 479 TCCAAGGGAATGGAGTTATAGATGGTTCTGGTACCAAATGGTGGGCTGCTTCTTGCAAGA 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 TCCAAGGGAATGGAGTTATAGATGGTTCTGGTACCAAATGGTGGGCTGCTTCTTGCAAGA 529
Query 539 AGAACAAGTCTAACCCTTGCGTAGGCGCACCAACGGCTCTAACTATATATTCAAGTTCAA 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 AGAACAAGTCTAACCCTTGCGTAGGCGCACCAACGGCTCTAACTATATATTCAAGTTCAA 589
Query 599 ATGTGTATGTGAGAGGCTTAACTATCCGGAACAGCCAACAGATGCACTTGATCATA-CAA 657
|||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||| |
Sbjct 590 ATGTGTATGTGAGAGGCTTAACAATCCGGAACAGCCAACAAATGCATTTGATCATAGCT- 648
Query 658 CGGTCAACTACAGTTCGAATCTCTAGAGTTATGGTCACATCTCCAGGAGACAGTCCCAAC 717
|| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 649 CGATCAAATACAGTTCGAATCTCTAGAGTTATGGTCACATCTCCAGGTGACAGTCCCAAC 708
Query 718 ACTGATGGAATTCATATAACCGCATCTACCGATGTTGTAGTCCAAGACAGTAAAATCAGC 777
||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct 709 ACTGATGGAATTCATATCACCGCATCGACTGATGTTGTAGTCCAAGACAGTAAAATCAGC 768
Query 778 ACAGGAGATGATTGTGTCTCGATTGTGAATGGAAGCGCCAAGATAAAGATGAAGAGGATC 837
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 769 ACAGGAGATGATTGTGTCTCGATTGTGAATGGAAGCGCGAAGATAAAGATGAAGAGAATC 828
Query 838 TACTGTGGACCAGGACATGGAATCAGTATTGGAAGTCTTGGACAAGGACATTCGAAAGGA 897
|||||||||||||||||||||||||| |||||||| ||||||||||| ||||||| ||||
Sbjct 829 TACTGTGGACCAGGACATGGAATCAGCATTGGAAGCCTTGGACAAGGTCATTCGACAGGA 888
Query 898 ACCGTCACTGCAGTTGTGTTGGAAACTGCGTTCTTAAAGAACACAACTAATGGTCTAAGA 957
||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||
Sbjct 889 ACCGTCACTGCAGTTGTGTTGGATACTGCGTTCCTAAAAAACACAACTAATGGTCTAAGA 948
Query 958 ATCAAGACATGGCAGGGTGGTAATGGTTACGTAAAGGGTGTACGTTTCGAGAACGTAGTG 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 ATCAAGACATGGCAGGGTGGTAATGGTTACGTAAAGGGTGTACGTTTCGAGAACGTAGTG 1008
Query 1018 ATGCAGGACGTTGCGAATCCGATTATAATCGATCAATTCTACTGTGATTCACCATCAACT 1077
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1009 ATGCAGGACGTTGCAAATCCGATTATAATCGATCAATTCTACTGTGATTCGCCATCAACT 1068
Query 1078 TGTCAAAACCAGACATCGGCGGTTCACATATCCGAGATAATGTACAGGAACATAACCGGA 1137
|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1069 TGTCAAAACCAGACATCGGCGGTTCACATAAGCGAGATAATGTACAGAAACATAACCGGA 1128
Query 1138 ACCACGAAAAGCTCAAAAGCCATCAACTTCAAGTGTAGTGACGCAGTCCCTTGCAGCCAC 1197
||||| |||||| | ||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1129 ACCACTAAAAGCGCGAAAGCCATCAAATTCGCGTGTAGTGACGCAGTCCCTTGCAGCCAC 1188
Query 1198 ATTGTCCTCAACAATATCAACTTGGAAGGCAATGATGGAAAAGTAGAAGCATATTGTAAC 1257
||||| ||||||||| |||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1189 ATTGTACTCAACAATGTCAATTTGGAAGGCAATGATGGAAAAGTGGAAGCATATTGTAAC 1248
Query 1258 TCTGCTGAAGGGTTTGGTTATGGTGTAGTTCATCCTTCTGCGGATTGTCTGTATTCGCAT 1317
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1249 TCTGCTGAAGGGTTTGGTTATGGTGTGGTTCATCCTTCTGCGGATTGTCTGTATTCGCAT 1308
Query 1318 GACGACAAGAGCTTAAACCAAACTGATCAGTATTTGGCAGAAACTATTATGGTCGAAAAA 1377
||||||||| |||||||||||||| || ||||||||||||||||| ||||| ||| | |
Sbjct 1309 GACGACAAGGGCTTAAACCAAACTCATGAGTATTTGGCAGAAACTGTTATGATCGGAGAT 1368
Query 1378 GAAACTGAAAATGCTCATGATGAGCTTTAA 1407
||||||| | ||| | | || |||||||||
Sbjct 1369 GAAACTGGAGATGTTTACGACGAGCTTTAA 1398
> Ahg313215 jgi|Araly1|313215|fgenesh1_pm.C_scaffold_1001995
Length=3405
Score = 217 bits (117), Expect = 2e-55
Identities = 262/330 (79%), Gaps = 18/330 (5%)
Strand=Plus/Plus
Query 58 GCTACAGGAAAAATGTTGTTCAAGGAACTTGACATTCTTG-GGAAGCTTGAGAACCTCGA 116
||| |||| |||||| ||| || || || ||||| |||| || ||||||||||| | ||
Sbjct 1972 GCTTCAGGGAAAATGGTGTACACCGATCTCGACATCCTTGAGG-AGCTTGAGAACTTTGA 2030
Query 117 TGTACCTGAGGATGATATTGAGGATG-ATGTGACCTTCTTTGATTT-CTCGTCGTTTACA 174
|||| | | | | | ||| |||| | | | |||||||||| | | || || |||
Sbjct 2031 TGTA--T--TG-TTAGA-TGATGATGAAACAAAGC-TCTTTGATTTGC-CTTCATTCACA 2082
Query 175 AGCCAATATTCTGGTAAGAATCTGGTGAATGTGGATAGC-TTTAATGCATCTGGAGATGG 233
|||| | |||||||||||||||||||||||||||||| | || |||| ||||||||||
Sbjct 2083 AGCCGACATTCTGGTAAGAATCTGGTGAATGTGGATA-CATTCGGTGCAGCTGGAGATGG 2141
Query 234 AGTTTCTGATGATACTCAGGCATTTATAAGAGCTTGGACCATGGCCTGCTCTGCACCAAA 293
|||||||||||||||||||||||| ||||| || |||| || |||||| | || ||||
Sbjct 2142 AGTTTCTGATGATACTCAGGCATTCATAAGCGCATGGAGCAAAGCCTGCGGTACATCAAA 2201
Query 294 CTCTGT-TTTATTGGTTCCACAAGGACGTAGCTATTTAGTAAATGCGACGAAA-TTCGAT 351
||||| ||| | ||||||| ||||||| | |||||||||||||| || ||| ||| ||
Sbjct 2202 ATCTGTGTTTCT-GGTTCCAGAAGGACGGCGATATTTAGTAAATGCAAC-AAAGTTCAAT 2259
Query 352 GGTCCATGTCAAGAAAAATTGATCATTCAG 381
||||||||| || |||| ||||||||||||
Sbjct 2260 GGTCCATGTGAACAAAAGTTGATCATTCAG 2289
> Ahg494865 jgi|Araly1|494865|fgenesh2_kg.8__681__AT5G48140.1
Length=1387
Score = 56.5 bits (30), Expect = 5e-07
Identities = 39/43 (91%), Gaps = 1/43 (2%)
Strand=Plus/Plus
Query 838 TAC-TGTGGACCAGGACATGGAATCAGTATTGGAAGTCTTGGA 879
||| || || || ||||||||||||||||||||||||||||||
Sbjct 737 TACATGCGGTCCGGGACATGGAATCAGTATTGGAAGTCTTGGA 779
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52602628345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5