BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G70500.1 Length=1407 Score E Sequences producing significant alignments: (Bits) Value Ahg908642 jgi|Araly1|908642|Al_scaffold_0002_1723 2097 0.0 Ahg313215 jgi|Araly1|313215|fgenesh1_pm.C_scaffold_1001995 217 2e-55 Ahg494865 jgi|Araly1|494865|fgenesh2_kg.8__681__AT5G48140.1 56.5 5e-07 > Ahg908642 jgi|Araly1|908642|Al_scaffold_0002_1723 Length=1398 Score = 2097 bits (1135), Expect = 0.0 Identities = 1321/1410 (94%), Gaps = 15/1410 (1%) Strand=Plus/Plus Query 1 ATGATTAAACCCTTTATTATTTCTCTGTTTGCTCTGTTGATGGTAGCTTCTTATGGAGCT 60 |||| ||| ||||| || |||| |||||||||||||| ||||||||||||||| | | Sbjct 1 ATGAATAAGCCCTTCATCGTTTCCCTGTTTGCTCTGTTAATGGTAGCTTCTTAT-G-G-- 56 Query 61 ACAGGAAAAATGTTGTTCAAG-GAACTTGACATTCTTGGGAAGCTTGAGAACCTCGATGT 119 | | ||| | || | | || |||||||||||||||| ||||||||||||||||||||| Sbjct 57 A-A--AAACA--TTCTAC-AGAGAACTTGACATTCTTGAGAAGCTTGAGAACCTCGATGT 110 Query 120 ACCTGAGGATGATATTGAGGATGATGTGACCTTCTTTGATTTCTCGTCGTTTACAAGCCA 179 |||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 111 ACCTGAGGATGAGATTGAGGATGATGTGACGTTCTTTGATTTCTCGTCATTTACAAGCCA 170 Query 180 ATATTCTGGTAAGAATCTGGTGAATGTGGATAGCTTTAATGCATCTGGAGATGGAGTTTC 239 ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| Sbjct 171 ATATTCTGGTAAGAATCTGGTGAATGTGGATAGCTTTGGTGCAGCTGGAGATGGAGTTTC 230 Query 240 TGATGATACTCAGGCATTTATAAGAGCTTGGACCATGGCCTGCTCTGCACCAAACTCTGT 299 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 231 TGATGATACTCAGGCATTTATAAGCGCTTGGACCATGGCCTGCTCTGCACCAAACTCTGT 290 Query 300 TTTATTGGTTCCACAAGGACGTAGCTATTTAGTAAATGCGACGAAATTCGATGGTCCATG 359 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 291 GTTATTGGTTCCACAAGGACGTAGCTATTTAGTAAATGCAACGAAATTCGATGGTCCATG 350 Query 360 TCAAGAAAAATTGATCATTCAGATTGATGGAACAATCATAGCACCAGATGAGCCTAGCCA 419 ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| || Sbjct 351 TCAAGAAAAATTGATCATTCAGATTGATGGAACGATCGTAGCACCAGATGAGCCTAGTCA 410 Query 420 ATGGGACCCGAAATTCCCAAGGAAT-TGGCTTCAATTTTCCAAACTCCAAGGAGTTGTAT 478 ||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||| Sbjct 411 ATGGGACCCGAAATTCCAAAGG-GTCTGGCTTCAATTTTCCAAACTCCAAGGAGTTGTAT 469 Query 479 TCCAAGGGAATGGAGTTATAGATGGTTCTGGTACCAAATGGTGGGCTGCTTCTTGCAAGA 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 470 TCCAAGGGAATGGAGTTATAGATGGTTCTGGTACCAAATGGTGGGCTGCTTCTTGCAAGA 529 Query 539 AGAACAAGTCTAACCCTTGCGTAGGCGCACCAACGGCTCTAACTATATATTCAAGTTCAA 598 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 530 AGAACAAGTCTAACCCTTGCGTAGGCGCACCAACGGCTCTAACTATATATTCAAGTTCAA 589 Query 599 ATGTGTATGTGAGAGGCTTAACTATCCGGAACAGCCAACAGATGCACTTGATCATA-CAA 657 |||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||| | Sbjct 590 ATGTGTATGTGAGAGGCTTAACAATCCGGAACAGCCAACAAATGCATTTGATCATAGCT- 648 Query 658 CGGTCAACTACAGTTCGAATCTCTAGAGTTATGGTCACATCTCCAGGAGACAGTCCCAAC 717 || |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 649 CGATCAAATACAGTTCGAATCTCTAGAGTTATGGTCACATCTCCAGGTGACAGTCCCAAC 708 Query 718 ACTGATGGAATTCATATAACCGCATCTACCGATGTTGTAGTCCAAGACAGTAAAATCAGC 777 ||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||| Sbjct 709 ACTGATGGAATTCATATCACCGCATCGACTGATGTTGTAGTCCAAGACAGTAAAATCAGC 768 Query 778 ACAGGAGATGATTGTGTCTCGATTGTGAATGGAAGCGCCAAGATAAAGATGAAGAGGATC 837 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 769 ACAGGAGATGATTGTGTCTCGATTGTGAATGGAAGCGCGAAGATAAAGATGAAGAGAATC 828 Query 838 TACTGTGGACCAGGACATGGAATCAGTATTGGAAGTCTTGGACAAGGACATTCGAAAGGA 897 |||||||||||||||||||||||||| |||||||| ||||||||||| ||||||| |||| Sbjct 829 TACTGTGGACCAGGACATGGAATCAGCATTGGAAGCCTTGGACAAGGTCATTCGACAGGA 888 Query 898 ACCGTCACTGCAGTTGTGTTGGAAACTGCGTTCTTAAAGAACACAACTAATGGTCTAAGA 957 ||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||| Sbjct 889 ACCGTCACTGCAGTTGTGTTGGATACTGCGTTCCTAAAAAACACAACTAATGGTCTAAGA 948 Query 958 ATCAAGACATGGCAGGGTGGTAATGGTTACGTAAAGGGTGTACGTTTCGAGAACGTAGTG 1017 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 949 ATCAAGACATGGCAGGGTGGTAATGGTTACGTAAAGGGTGTACGTTTCGAGAACGTAGTG 1008 Query 1018 ATGCAGGACGTTGCGAATCCGATTATAATCGATCAATTCTACTGTGATTCACCATCAACT 1077 |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1009 ATGCAGGACGTTGCAAATCCGATTATAATCGATCAATTCTACTGTGATTCGCCATCAACT 1068 Query 1078 TGTCAAAACCAGACATCGGCGGTTCACATATCCGAGATAATGTACAGGAACATAACCGGA 1137 |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| Sbjct 1069 TGTCAAAACCAGACATCGGCGGTTCACATAAGCGAGATAATGTACAGAAACATAACCGGA 1128 Query 1138 ACCACGAAAAGCTCAAAAGCCATCAACTTCAAGTGTAGTGACGCAGTCCCTTGCAGCCAC 1197 ||||| |||||| | ||||||||||| ||| |||||||||||||||||||||||||||| Sbjct 1129 ACCACTAAAAGCGCGAAAGCCATCAAATTCGCGTGTAGTGACGCAGTCCCTTGCAGCCAC 1188 Query 1198 ATTGTCCTCAACAATATCAACTTGGAAGGCAATGATGGAAAAGTAGAAGCATATTGTAAC 1257 ||||| ||||||||| |||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 1189 ATTGTACTCAACAATGTCAATTTGGAAGGCAATGATGGAAAAGTGGAAGCATATTGTAAC 1248 Query 1258 TCTGCTGAAGGGTTTGGTTATGGTGTAGTTCATCCTTCTGCGGATTGTCTGTATTCGCAT 1317 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1249 TCTGCTGAAGGGTTTGGTTATGGTGTGGTTCATCCTTCTGCGGATTGTCTGTATTCGCAT 1308 Query 1318 GACGACAAGAGCTTAAACCAAACTGATCAGTATTTGGCAGAAACTATTATGGTCGAAAAA 1377 ||||||||| |||||||||||||| || ||||||||||||||||| ||||| ||| | | Sbjct 1309 GACGACAAGGGCTTAAACCAAACTCATGAGTATTTGGCAGAAACTGTTATGATCGGAGAT 1368 Query 1378 GAAACTGAAAATGCTCATGATGAGCTTTAA 1407 ||||||| | ||| | | || ||||||||| Sbjct 1369 GAAACTGGAGATGTTTACGACGAGCTTTAA 1398 > Ahg313215 jgi|Araly1|313215|fgenesh1_pm.C_scaffold_1001995 Length=3405 Score = 217 bits (117), Expect = 2e-55 Identities = 262/330 (79%), Gaps = 18/330 (5%) Strand=Plus/Plus Query 58 GCTACAGGAAAAATGTTGTTCAAGGAACTTGACATTCTTG-GGAAGCTTGAGAACCTCGA 116 ||| |||| |||||| ||| || || || ||||| |||| || ||||||||||| | || Sbjct 1972 GCTTCAGGGAAAATGGTGTACACCGATCTCGACATCCTTGAGG-AGCTTGAGAACTTTGA 2030 Query 117 TGTACCTGAGGATGATATTGAGGATG-ATGTGACCTTCTTTGATTT-CTCGTCGTTTACA 174 |||| | | | | | ||| |||| | | | |||||||||| | | || || ||| Sbjct 2031 TGTA--T--TG-TTAGA-TGATGATGAAACAAAGC-TCTTTGATTTGC-CTTCATTCACA 2082 Query 175 AGCCAATATTCTGGTAAGAATCTGGTGAATGTGGATAGC-TTTAATGCATCTGGAGATGG 233 |||| | |||||||||||||||||||||||||||||| | || |||| |||||||||| Sbjct 2083 AGCCGACATTCTGGTAAGAATCTGGTGAATGTGGATA-CATTCGGTGCAGCTGGAGATGG 2141 Query 234 AGTTTCTGATGATACTCAGGCATTTATAAGAGCTTGGACCATGGCCTGCTCTGCACCAAA 293 |||||||||||||||||||||||| ||||| || |||| || |||||| | || |||| Sbjct 2142 AGTTTCTGATGATACTCAGGCATTCATAAGCGCATGGAGCAAAGCCTGCGGTACATCAAA 2201 Query 294 CTCTGT-TTTATTGGTTCCACAAGGACGTAGCTATTTAGTAAATGCGACGAAA-TTCGAT 351 ||||| ||| | ||||||| ||||||| | |||||||||||||| || ||| ||| || Sbjct 2202 ATCTGTGTTTCT-GGTTCCAGAAGGACGGCGATATTTAGTAAATGCAAC-AAAGTTCAAT 2259 Query 352 GGTCCATGTCAAGAAAAATTGATCATTCAG 381 ||||||||| || |||| |||||||||||| Sbjct 2260 GGTCCATGTGAACAAAAGTTGATCATTCAG 2289 > Ahg494865 jgi|Araly1|494865|fgenesh2_kg.8__681__AT5G48140.1 Length=1387 Score = 56.5 bits (30), Expect = 5e-07 Identities = 39/43 (91%), Gaps = 1/43 (2%) Strand=Plus/Plus Query 838 TAC-TGTGGACCAGGACATGGAATCAGTATTGGAAGTCTTGGA 879 ||| || || || |||||||||||||||||||||||||||||| Sbjct 737 TACATGCGGTCCGGGACATGGAATCAGTATTGGAAGTCTTGGA 779 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52602628345 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5