BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70505.1
Length=1077
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476174 jgi|Araly1|476174|fgenesh2_kg.2__1304__AT1G70505.1 1482 0.0
> Ahg476174 jgi|Araly1|476174|fgenesh2_kg.2__1304__AT1G70505.1
Length=1005
Score = 1482 bits (802), Expect = 0.0
Identities = 897/943 (95%), Gaps = 5/943 (1%)
Strand=Plus/Plus
Query 1 ATGGTGAAGAATGTGTTTAGCAGAATTGATTTGTCGAGTTTTATTACAGGTTCAACTGAA 60
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1 ATGGTGAAGAATGTGTTTAGCCGAATTGATTTGTCGAGTTTTGTTACAGGTTCAACTGAA 60
Query 61 CATACTTGGCAACCAACAATGACTTCGGAGACAAACATTCCAAGTTACTGGCTTAACTGG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 CATACTTGGCAACCAACAATGACTTCGGAGACAAACATTCCAAGTTACTGGCTAAACTGG 120
Query 121 AGATTCTTCGTCTGTGCAATCTTTGTCTTAACGTCTCTGTTTCTATCTTCTTATCTGATT 180
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 121 AGATTCTTTGTCTGTGCAATCTTTGTCTTAACGTCTCTGTTTCTATCTTCTTATGTGATT 180
Query 181 TGGAGATATGAAGGACCAATAAAACGCAAGAAA--C-GTGGTGATGATCAAAGCCTGGAG 237
||||||||||||||||||| || |||||| ||| | ||| ||||||||||| | ||||
Sbjct 181 TGGAGATATGAAGGACCAAGAACACGCAAAAAACGCGGTGATGATGATCAAAACATGGAA 240
Query 238 CTAGAACAACTCACAGGAGTTGTATATGATGATGAATCTTGGAATACTAGTGTCAAAGAG 297
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 241 CTAGAACAACTCACAGGAGTTGTATATGATGATGAAACTTGGAATACTTGTGTCAAAGAG 300
Query 298 ATTCATCCGAATTGGTTGTTAGGTTTTCGTGTTTTTGGTTTTGTTGTTCTTCTTGGACTT 357
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 ATTCATCCGAATTGGTTGTTAGGTTTTCGTGTTTTCGGTTTTGTTGTTCTTCTTGGACTT 360
Query 358 ATCTCTGGTAATGCTATTGCTGATGGAACCGGCATTTTCATCTTCTACACACAATGGACT 417
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 361 ATCTCTGGTAATGCTATTGCTGGTGGAACCGGCATTTTCATCTTCTACACACAATGGACT 420
Query 418 TTCACATTGGTCACAATTTACTTTGGGCTTGGATCATTGGTGTCCATATACAGATTTAGG 477
||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||| |
Sbjct 421 TTCACATTGGTCACAATTTACTTTGGGCTTGCAGCATTGGCGTCCATATACAGATTTAAG 480
Query 478 TCTCCTGATAATGGTGAAAACAGAGTTAGTATAGTAGATGAAGAGCAAGGGACGTATAGA 537
||| |||||||||||||||||||| | |||||||| |||||||||||||| ||||||||
Sbjct 481 TCTGCTGATAATGGTGAAAACAGAATCAGTATAGTGGATGAAGAGCAAGGTTCGTATAGA 540
Query 538 CCTCCCGGGAATGCCGAAAACTCGAATGTGTTTAAATCTTCA-AGCGGACACGATAGAGA 596
||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 541 CCTCCCGGGAATGGCGAAAACTCGAATGTGTTTAAATCTTCATA-CGGACACGATAGAGA 599
Query 597 AAACATGTCTACACGTCAGGTTGCAACTACATTGGGTTACATTCATCAGATTCTTTTTCA 656
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AAACAGGTCTACACGTCAGGTTGCAACTACATTGGGTTACATTCATCAGATTCTTTTTCA 659
Query 657 AACTTGTGCAGGAGCTGTATTGCTCACAGATGGTGTGTTTTGGTTCATTATCTATCCTTT 716
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 660 AACTTGTGCAGGAGCTGTTTTGCTCACAGATGGTGTGTTTTGGTTCATTATCTACCCTTT 719
Query 717 TCTCACAGCTAAAGATTTCAATCTCGACTTTTTTATTGTGATTATGCACTCGGTCAATGC 776
||| ||||| ||||||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 720 TCTTACAGCCAAAGATTTCAATCTCGACTTTTTCATTGTCATTATGCACTCAGTCAATGC 779
Query 777 TATCTTCCTCCTCGGTGAAACTTTCTTGAATTCTCTGGGTTTCATACTTTGTGGTATGGA 836
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TATTTTCCTCCTCGGTGAAACTTTCTTGAATTCTCTGGGTTTCATACTTTGTGGTATGGA 839
Query 837 CCGGCATATTCGTGCTATTTCAATGGATTGTTCATGCTTGTGTCTCCTTTTGGTGGCCTT 896
||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||
Sbjct 840 CCGGCATATTCGTGCTATTCCAATGGATTGTTCATGCATGTGTCTCCTTCTGGTGGCCTT 899
Query 897 ACCCATTCTTGGATTTGTCATCATCCTATGCTCCTTTATGGTA 939
||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 900 ACCCATTCTTGGATTTGTCATCACCCTATGCCCCTTTATGGTA 942
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40105308684
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5