BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G70510.1 Length=1368 Score E Sequences producing significant alignments: (Bits) Value Ahg476175 jgi|Araly1|476175|fgenesh2_kg.2__1305__AT1G70510.1 1450 0.0 Ahg472599 jgi|Araly1|472599|fgenesh2_kg.1__2553__AT1G23380.2 558 3e-158 > Ahg476175 jgi|Araly1|476175|fgenesh2_kg.2__1305__AT1G70510.1 Length=1071 Score = 1450 bits (785), Expect = 0.0 Identities = 941/1016 (93%), Gaps = 12/1016 (1%) Strand=Plus/Plus Query 150 ATGGATAGAATGTGTGGTTTCCGCTCGACGGAAGACTATTCGGAGAAAGCGACGTTGATG 209 |||||||||||||||||||| || ||||| ||||| ||||||||| |||| ||| ||||| Sbjct 1 ATGGATAGAATGTGTGGTTTTCGTTCGACAGAAGAGTATTCGGAGCAAGCAACGCTGATG 60 Query 210 ATGCCGTCCGATTATCAGTCTTTGATTTGTTCAACCACCGGAGACAATCAAAGAC-TGTT 268 ||||||||||||||||| || ||||||||||| ||||||||||||||| | | |||| Sbjct 61 ATGCCGTCCGATTATCAATCGCTGATTTGTTCATCCACCGGAGACAATC---G-CGTGTT 116 Query 269 TGGATCCGACGAACTCGCTACCGCTTTGTCCTC-GGAGTTGCTTCCGCGTATTCGAAAAG 327 ||||||||||||||||||||| ||||| || || | || || ||| ||||||||||||| Sbjct 117 TGGATCCGACGAACTCGCTACGGCTTTATCGTCAGAAG-CGCCTCCACGTATTCGAAAAG 175 Query 328 CTGAGGATAATTTCTCTCTTAGTGTCATCAAATCCAAAATCGCTTCTCATCCTTTGTATC 387 |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 176 CTGATGATAATTTCTCTCTTAGTGTCATCAAATCCAAAATCGCTTGTCATCCTTTGTATC 235 Query 388 CTCGCTTACTCCAAACCTACATCGATTGCCAAAAGGTGGGAGCGCCTATGGAAATAGCGT 447 ||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 236 CTCGCTTGCTCCAAACCTACATCGATTGCCAAAAGGTGGGAGCACCTATGGATATAGCGT 295 Query 448 GTATATTGGAAGAGATTCAGCGAGAGAACCATGTGTACAAGAGAGATGTTGCTCCATTAT 507 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 296 GTATATTGGAAGAGATTCAGCAAGAGAACCATGTGTACAAGAGAGATGTTGCTCCATTAT 355 Query 508 CTTGCTTTGGAGCTGATCCTGAGCTTGATGAATTCATGGAAACCTACTGTGATATATTGG 567 |||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 356 CTTGCTTTGGAGATGATCCTGAGCTTGACGAATTCATGGAAACCTACTGTGATATTTTGG 415 Query 568 TTAAATACAAAACCGATCTTGCGAGGCCGTTCGACGAGGCTACAACTTTCATAAACAAGA 627 ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 416 TTAAATACAAAGCCGATCTTGCGAGGCCGTTCGACGAGGCTGCAACTTTCATAAACAAGA 475 Query 628 TTGAAATGCAGCTTCAGAACTTGTGCACTGGTCCAGCGTCTGCTACAGCTCTTTCAGATG 687 | |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 476 TCGAAATGCAACTTCAGAACCTGTGCACTGGTCCAGCGTCTGCTACAGCTCTTTCAGATG 535 Query 688 ATGGTGCGGTTTCATCTGACGAGGAACTGAGAGAAGATGATGACATAGCAGCGGATGACA 747 |||| |||||||||||||||||||||||||||||||||||| || || ||||| | |||| Sbjct 536 ATGGCGCGGTTTCATCTGACGAGGAACTGAGAGAAGATGATCACGTAACAGCGCAGGACA 595 Query 748 GCCAACAAAGAAGCAATGACCGCGATCTGAAGGACCAGCTACTACGCAAATTTGGTAGCC 807 |||||||| ||||||||||||| ||||||||||||||||||||||| ||||| ||||||| Sbjct 596 GCCAACAACGAAGCAATGACCGGGATCTGAAGGACCAGCTACTACGTAAATTCGGTAGCC 655 Query 808 ATATCAGTTCATTGAAACTCGAGTTCTCTAAAAAGAAGAAGAAAGGGAAGCTACCAAGAG 867 |||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||| Sbjct 656 ATATCAGTTCATTGAAGCTCGAGTTCTCTAAGAAGAAGAAGAAAGGGAAGTTACCAAGAG 715 Query 868 AAGCAAGACAAGCGTTGCTCGATTGGTGGAATGTTCATAATAAATGGCCTTACCCTACTG 927 ||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||| Sbjct 716 AAGCAAGACAAGCGTTGTTCGATTGGTGGAATGTTCATTATAAATGGCCTTACCCCACTG 775 Query 928 AAGGCGACAAAATATCTCTGGCTGAAGAAACAGGTTTGGATCAAAAACAAATCAACAATT 987 |||| ||||||||| ||||||||| ||||||||| ||| ||||||| ||||||||||||| Sbjct 776 AAGGTGACAAAATAGCTCTGGCTGGAGAAACAGGATTGAATCAAAAGCAAATCAACAATT 835 Query 988 GGTTTATAAACCAAAGGAAACGCCATTGGAAGCCTTCGGAGAACATGCCGTTTGATATGA 1047 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 836 GGTTTATAAACCAAAGGAAACGCCATTGGAAGCCTTCGGAGAACATGCCGTTCGATATGA 895 Query 1048 TGGACGATTCTAATGAAACATTCTTTACCGAGTAATGAAAAGAGAGACATGAAATTGTGC 1107 |||| |||||||||||||||||||| |||||| |||||||||||||| |||| ||||||| Sbjct 896 TGGATGATTCTAATGAAACATTCTTAACCGAGGAATGAAAAGAGAGAGATGAGATTGTGC 955 Query 1108 ATTGTATAATTTTTACACT-GTTTTTCCAAGAAAAGAAAAC-AGTAAAAA-GCTTT 1160 ||||||||||||| ||| | ||||| || ||||||||||| |||||||| ||||| Sbjct 956 ATTGTATAATTTT-ACA-TAGTTTTCCCGAGAAAAGAAAAGGAGTAAAAAAGCTTT 1009 > Ahg472599 jgi|Araly1|472599|fgenesh2_kg.1__2553__AT1G23380.2 Length=1306 Score = 558 bits (302), Expect = 3e-158 Identities = 627/780 (80%), Gaps = 38/780 (5%) Strand=Plus/Plus Query 329 TGAGGATAA--TTTCTCTCTTAGTGTCATCAA-ATCCAAAATCGCTTCTCATCCTTTGTA 385 ||| ||||| ||||| | | ||||||||||| | |||||||||||| |||||||| ||| Sbjct 331 TGATGATAACGTTTCT-T-TAAGTGTCATCAAGA-CCAAAATCGCTTGTCATCCTTCGTA 387 Query 386 TCCTCGCTTACTCCAAACCTACATCGATTGCC-----AAA-AGGTGGGAGCGCCTA-TGG 438 |||||||||||| || ||||||||||||||| ||| |||| ||||| || | || Sbjct 388 TCCTCGCTTACTTCAGGCCTACATCGATTGCCAAAAGAAACAGGTCGGAGCACC-ACCGG 446 Query 439 AAATAGCGTGTATATTGGAAGAGATTCAGCGAGAGAACCATGTGTACAAG-AGAGATGTT 497 | ||||||||| | |||| |||||||| || |||| ||||||| ||| | ||| ||| Sbjct 447 AGATAGCGTGTTTGCTGGAGGAGATTCAACGGGAGAGTGATGTGTATAAGCA-AGAAGTT 505 Query 498 GCTCCATT-ATCTTGCTTTGGAGCTGATCCTGAGCTTGATGAATTCATGGAAACCTACTG 556 | ||| || | ||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 506 GTTCC-TTCGTATTGCTTTGGAGCTGATCCTGAGCTTGATGAATTTATGGAAACGTACTG 564 Query 557 TGATATATTGGTTAAATACAAAACCGATCTTGCGAGGCCGTTCGACGAGGCTACAACTTT 616 ||||||||||| || |||||| | ||||| || || ||||| || |||||||| ||| Sbjct 565 CGATATATTGGTGAAGTACAAATCGGATCTAGCAAGACCGTTTGATGAGGCTACGTGTTT 624 Query 617 CATAAACAAGATTGAAATGCAGCTTCAGAACTTGTGCACTGGT-CCAGCGTCTGCTACAG 675 | | ||||||||||| |||||||| | |||| | || |||||| | | |||||| | || Sbjct 625 CTTGAACAAGATTGAGATGCAGCTACGGAACCTATGTACTGGTGTC-GAGTCTGCCAGAG 683 Query 676 CTCTTTCAGATGATGGTGCGGTTTCATCTGACGAGGAACTGA---GAGAAGATGATGACA 732 |||| || |||||||| | ||||||||||||||||||| ||| ||| |||| | Sbjct 684 GAGTTTCTGAGGATGGTGCAATATCATCTGACGAGGAACTGAGTGGAGGTGATCATGA-A 742 Query 733 -TAGCAGCGGATGACAGCCAACAAAGAAGCAATGACCGCGATCTGAAGGACCA-GCTACT 790 |||||| |||| | |||||||| || | ||||| ||||| ||||| | | | || Sbjct 743 TTAGCAGAAGATG---GGAAACAAAGATGCGAGGACCGTGATCTCAAGGA-TAGGTTGCT 798 Query 791 ACGCAAATTTGGTAGCCATATCAGTTCATTGAAA-CTCGAGTTCTCTAAA-AAGAAGAAG 848 ||||||||||| |||| ||| ||||| || ||| || ||||| || ||| ||||| ||| Sbjct 799 TCGCAAATTTGGAAGCCGTATAAGTTC-TTTAAAGCTGGAGTTTTC-AAAGAAGAAAAAG 856 Query 849 AAAGGGAAGCTACCAAGAGAAGCAAGACAAGCGT-TGCTCGATTGGTGGAATGTTCATAA 907 ||||| |||||||| ||||||||||||||||| | | || |||||||||||| | ||| | Sbjct 857 AAAGGAAAGCTACCTAGAGAAGCAAGACAAGC-TCTTCTTGATTGGTGGAATCTCCATTA 915 Query 908 TAAATGGCCTTACCCTACTGAAGGCGACAAAATATCTCTGGCTGAAGAAACAGGTTTGGA 967 ||| |||||||||||||||||||| || || ||| || | ||||| | ||| || || || Sbjct 916 TAAGTGGCCTTACCCTACTGAAGGTGATAAGATAGCTTTAGCTGATGCAACGGGCTTAGA 975 Query 968 TCAAAAACAAATCAACAATTGGTTTATAAACCAAAGGAAACGCCATTGGAAGCCTTCGGA 1027 || |||||||||||||||||||||||||||||||||||||| |||||||| || || || Sbjct 976 CCAGAAACAAATCAACAATTGGTTTATAAACCAAAGGAAACGTCATTGGAAACCATCCGA 1035 Query 1028 GAACATGCCGTTT-GATATGATGGACGATTCTAATGAAACATTCTTTACCGAGTAATGAA 1086 ||| ||||| ||| | ||||||||| ||||||| || | |||||||||||||| |||||| Sbjct 1036 GAATATGCC-TTTCGCTATGATGGATGATTCTAGTGGATCATTCTTTACCGAGGAATGAA 1094 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51199077531 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5