BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70510.1
Length=1368
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476175 jgi|Araly1|476175|fgenesh2_kg.2__1305__AT1G70510.1 1450 0.0
Ahg472599 jgi|Araly1|472599|fgenesh2_kg.1__2553__AT1G23380.2 558 3e-158
> Ahg476175 jgi|Araly1|476175|fgenesh2_kg.2__1305__AT1G70510.1
Length=1071
Score = 1450 bits (785), Expect = 0.0
Identities = 941/1016 (93%), Gaps = 12/1016 (1%)
Strand=Plus/Plus
Query 150 ATGGATAGAATGTGTGGTTTCCGCTCGACGGAAGACTATTCGGAGAAAGCGACGTTGATG 209
|||||||||||||||||||| || ||||| ||||| ||||||||| |||| ||| |||||
Sbjct 1 ATGGATAGAATGTGTGGTTTTCGTTCGACAGAAGAGTATTCGGAGCAAGCAACGCTGATG 60
Query 210 ATGCCGTCCGATTATCAGTCTTTGATTTGTTCAACCACCGGAGACAATCAAAGAC-TGTT 268
||||||||||||||||| || ||||||||||| ||||||||||||||| | | ||||
Sbjct 61 ATGCCGTCCGATTATCAATCGCTGATTTGTTCATCCACCGGAGACAATC---G-CGTGTT 116
Query 269 TGGATCCGACGAACTCGCTACCGCTTTGTCCTC-GGAGTTGCTTCCGCGTATTCGAAAAG 327
||||||||||||||||||||| ||||| || || | || || ||| |||||||||||||
Sbjct 117 TGGATCCGACGAACTCGCTACGGCTTTATCGTCAGAAG-CGCCTCCACGTATTCGAAAAG 175
Query 328 CTGAGGATAATTTCTCTCTTAGTGTCATCAAATCCAAAATCGCTTCTCATCCTTTGTATC 387
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 176 CTGATGATAATTTCTCTCTTAGTGTCATCAAATCCAAAATCGCTTGTCATCCTTTGTATC 235
Query 388 CTCGCTTACTCCAAACCTACATCGATTGCCAAAAGGTGGGAGCGCCTATGGAAATAGCGT 447
||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 236 CTCGCTTGCTCCAAACCTACATCGATTGCCAAAAGGTGGGAGCACCTATGGATATAGCGT 295
Query 448 GTATATTGGAAGAGATTCAGCGAGAGAACCATGTGTACAAGAGAGATGTTGCTCCATTAT 507
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 296 GTATATTGGAAGAGATTCAGCAAGAGAACCATGTGTACAAGAGAGATGTTGCTCCATTAT 355
Query 508 CTTGCTTTGGAGCTGATCCTGAGCTTGATGAATTCATGGAAACCTACTGTGATATATTGG 567
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 356 CTTGCTTTGGAGATGATCCTGAGCTTGACGAATTCATGGAAACCTACTGTGATATTTTGG 415
Query 568 TTAAATACAAAACCGATCTTGCGAGGCCGTTCGACGAGGCTACAACTTTCATAAACAAGA 627
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 416 TTAAATACAAAGCCGATCTTGCGAGGCCGTTCGACGAGGCTGCAACTTTCATAAACAAGA 475
Query 628 TTGAAATGCAGCTTCAGAACTTGTGCACTGGTCCAGCGTCTGCTACAGCTCTTTCAGATG 687
| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 476 TCGAAATGCAACTTCAGAACCTGTGCACTGGTCCAGCGTCTGCTACAGCTCTTTCAGATG 535
Query 688 ATGGTGCGGTTTCATCTGACGAGGAACTGAGAGAAGATGATGACATAGCAGCGGATGACA 747
|||| |||||||||||||||||||||||||||||||||||| || || ||||| | ||||
Sbjct 536 ATGGCGCGGTTTCATCTGACGAGGAACTGAGAGAAGATGATCACGTAACAGCGCAGGACA 595
Query 748 GCCAACAAAGAAGCAATGACCGCGATCTGAAGGACCAGCTACTACGCAAATTTGGTAGCC 807
|||||||| ||||||||||||| ||||||||||||||||||||||| ||||| |||||||
Sbjct 596 GCCAACAACGAAGCAATGACCGGGATCTGAAGGACCAGCTACTACGTAAATTCGGTAGCC 655
Query 808 ATATCAGTTCATTGAAACTCGAGTTCTCTAAAAAGAAGAAGAAAGGGAAGCTACCAAGAG 867
|||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||
Sbjct 656 ATATCAGTTCATTGAAGCTCGAGTTCTCTAAGAAGAAGAAGAAAGGGAAGTTACCAAGAG 715
Query 868 AAGCAAGACAAGCGTTGCTCGATTGGTGGAATGTTCATAATAAATGGCCTTACCCTACTG 927
||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||
Sbjct 716 AAGCAAGACAAGCGTTGTTCGATTGGTGGAATGTTCATTATAAATGGCCTTACCCCACTG 775
Query 928 AAGGCGACAAAATATCTCTGGCTGAAGAAACAGGTTTGGATCAAAAACAAATCAACAATT 987
|||| ||||||||| ||||||||| ||||||||| ||| ||||||| |||||||||||||
Sbjct 776 AAGGTGACAAAATAGCTCTGGCTGGAGAAACAGGATTGAATCAAAAGCAAATCAACAATT 835
Query 988 GGTTTATAAACCAAAGGAAACGCCATTGGAAGCCTTCGGAGAACATGCCGTTTGATATGA 1047
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 836 GGTTTATAAACCAAAGGAAACGCCATTGGAAGCCTTCGGAGAACATGCCGTTCGATATGA 895
Query 1048 TGGACGATTCTAATGAAACATTCTTTACCGAGTAATGAAAAGAGAGACATGAAATTGTGC 1107
|||| |||||||||||||||||||| |||||| |||||||||||||| |||| |||||||
Sbjct 896 TGGATGATTCTAATGAAACATTCTTAACCGAGGAATGAAAAGAGAGAGATGAGATTGTGC 955
Query 1108 ATTGTATAATTTTTACACT-GTTTTTCCAAGAAAAGAAAAC-AGTAAAAA-GCTTT 1160
||||||||||||| ||| | ||||| || ||||||||||| |||||||| |||||
Sbjct 956 ATTGTATAATTTT-ACA-TAGTTTTCCCGAGAAAAGAAAAGGAGTAAAAAAGCTTT 1009
> Ahg472599 jgi|Araly1|472599|fgenesh2_kg.1__2553__AT1G23380.2
Length=1306
Score = 558 bits (302), Expect = 3e-158
Identities = 627/780 (80%), Gaps = 38/780 (5%)
Strand=Plus/Plus
Query 329 TGAGGATAA--TTTCTCTCTTAGTGTCATCAA-ATCCAAAATCGCTTCTCATCCTTTGTA 385
||| ||||| ||||| | | ||||||||||| | |||||||||||| |||||||| |||
Sbjct 331 TGATGATAACGTTTCT-T-TAAGTGTCATCAAGA-CCAAAATCGCTTGTCATCCTTCGTA 387
Query 386 TCCTCGCTTACTCCAAACCTACATCGATTGCC-----AAA-AGGTGGGAGCGCCTA-TGG 438
|||||||||||| || ||||||||||||||| ||| |||| ||||| || | ||
Sbjct 388 TCCTCGCTTACTTCAGGCCTACATCGATTGCCAAAAGAAACAGGTCGGAGCACC-ACCGG 446
Query 439 AAATAGCGTGTATATTGGAAGAGATTCAGCGAGAGAACCATGTGTACAAG-AGAGATGTT 497
| ||||||||| | |||| |||||||| || |||| ||||||| ||| | ||| |||
Sbjct 447 AGATAGCGTGTTTGCTGGAGGAGATTCAACGGGAGAGTGATGTGTATAAGCA-AGAAGTT 505
Query 498 GCTCCATT-ATCTTGCTTTGGAGCTGATCCTGAGCTTGATGAATTCATGGAAACCTACTG 556
| ||| || | ||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 506 GTTCC-TTCGTATTGCTTTGGAGCTGATCCTGAGCTTGATGAATTTATGGAAACGTACTG 564
Query 557 TGATATATTGGTTAAATACAAAACCGATCTTGCGAGGCCGTTCGACGAGGCTACAACTTT 616
||||||||||| || |||||| | ||||| || || ||||| || |||||||| |||
Sbjct 565 CGATATATTGGTGAAGTACAAATCGGATCTAGCAAGACCGTTTGATGAGGCTACGTGTTT 624
Query 617 CATAAACAAGATTGAAATGCAGCTTCAGAACTTGTGCACTGGT-CCAGCGTCTGCTACAG 675
| | ||||||||||| |||||||| | |||| | || |||||| | | |||||| | ||
Sbjct 625 CTTGAACAAGATTGAGATGCAGCTACGGAACCTATGTACTGGTGTC-GAGTCTGCCAGAG 683
Query 676 CTCTTTCAGATGATGGTGCGGTTTCATCTGACGAGGAACTGA---GAGAAGATGATGACA 732
|||| || |||||||| | ||||||||||||||||||| ||| ||| |||| |
Sbjct 684 GAGTTTCTGAGGATGGTGCAATATCATCTGACGAGGAACTGAGTGGAGGTGATCATGA-A 742
Query 733 -TAGCAGCGGATGACAGCCAACAAAGAAGCAATGACCGCGATCTGAAGGACCA-GCTACT 790
|||||| |||| | |||||||| || | ||||| ||||| ||||| | | | ||
Sbjct 743 TTAGCAGAAGATG---GGAAACAAAGATGCGAGGACCGTGATCTCAAGGA-TAGGTTGCT 798
Query 791 ACGCAAATTTGGTAGCCATATCAGTTCATTGAAA-CTCGAGTTCTCTAAA-AAGAAGAAG 848
||||||||||| |||| ||| ||||| || ||| || ||||| || ||| ||||| |||
Sbjct 799 TCGCAAATTTGGAAGCCGTATAAGTTC-TTTAAAGCTGGAGTTTTC-AAAGAAGAAAAAG 856
Query 849 AAAGGGAAGCTACCAAGAGAAGCAAGACAAGCGT-TGCTCGATTGGTGGAATGTTCATAA 907
||||| |||||||| ||||||||||||||||| | | || |||||||||||| | ||| |
Sbjct 857 AAAGGAAAGCTACCTAGAGAAGCAAGACAAGC-TCTTCTTGATTGGTGGAATCTCCATTA 915
Query 908 TAAATGGCCTTACCCTACTGAAGGCGACAAAATATCTCTGGCTGAAGAAACAGGTTTGGA 967
||| |||||||||||||||||||| || || ||| || | ||||| | ||| || || ||
Sbjct 916 TAAGTGGCCTTACCCTACTGAAGGTGATAAGATAGCTTTAGCTGATGCAACGGGCTTAGA 975
Query 968 TCAAAAACAAATCAACAATTGGTTTATAAACCAAAGGAAACGCCATTGGAAGCCTTCGGA 1027
|| |||||||||||||||||||||||||||||||||||||| |||||||| || || ||
Sbjct 976 CCAGAAACAAATCAACAATTGGTTTATAAACCAAAGGAAACGTCATTGGAAACCATCCGA 1035
Query 1028 GAACATGCCGTTT-GATATGATGGACGATTCTAATGAAACATTCTTTACCGAGTAATGAA 1086
||| ||||| ||| | ||||||||| ||||||| || | |||||||||||||| ||||||
Sbjct 1036 GAATATGCC-TTTCGCTATGATGGATGATTCTAGTGGATCATTCTTTACCGAGGAATGAA 1094
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51199077531
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5