BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70520.1
Length=2194
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926378 jgi|Araly1|926378|scaffold_201939.1 3001 0.0
> Ahg926378 jgi|Araly1|926378|scaffold_201939.1
Length=1990
Score = 3001 bits (1625), Expect = 0.0
Identities = 1873/1994 (94%), Gaps = 11/1994 (1%)
Strand=Plus/Plus
Query 68 TCAATC-AAACAAAACAAAATGAAGAAAGAACCTGTCCATATCCTTCCTCTGTACCTTCC 126
|||||| |||| ||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 2 TCAATCAAAACCAAACAAAATGAAGAAAGAACCAATTCATATCCTTCCTCTGTACCTTCC 61
Query 127 ATGTCTCTTGATGTTTCTTCTTTCATCACTCCGTCAAATCACCGGAGACGCAAGGGCTAG 186
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 62 ATGTCTCTTAATGTTTCTTCTTTCATCACTCCGTCAAATCACCGGAGACGCAAGGGCTCG 121
Query 187 AGCCGTTAAAGTCACTTGCTCACCTTTGCTTGAGCACAACGAAACCGCTTATGTCCCAAA 246
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 AGCTGTTCAAGTCACTTGCTCACCTTTGCTTGAGCACAACGAAACCGCTTATGTCCCAAA 181
Query 247 TTTCGTAGCCACAATGGAGAAAATCAGCACACAAGTACAAACTTCCGGTTTTGGAGTTGC 306
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 182 TTTCGTAGCCACAATGGAGAAAATCAGTACACAAGTACAAACTTCCGGTTTTGGAGTTGC 241
Query 307 TCTCACCGGTACAGGACCAGACGCTAACTATGGTCTTGCGCAGTGCTATGGTGATCTTCC 366
|||||||||||||||||| || |||||||| |||||||| |||||||| |||||||||||
Sbjct 242 TCTCACCGGTACAGGACCTGATGCTAACTACGGTCTTGCACAGTGCTACGGTGATCTTCC 301
Query 367 TTTAAACGATTGTGTACTCTGTTACGCGGAAGCAAGGACGATGCTTCCGCAGTGTTATCC 426
|||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 302 TTTAAACGATTGCGTCCTCTGTTACGCGGAAGCACGGACGATGCTTCCGCAGTGTTATCC 361
Query 427 TCAGAACGGAGGTAGAATCTTTCTTGATGGATGTTTTATGAGAGCTGAGAATTATAGTTT 486
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 TCAGAACGGAGGAAGAATCTTTCTTGATGGATGTTTTATGAGAGCTGAGAATTATAGTTT 421
Query 487 CTATAATGAATACAAAGGACCTGAAGATAGCATCGTATGTGGAAACACGACGAGAAAGAA 546
|||||| |||| ||||||||||||||||| | | || ||||||||||||||| ||||||
Sbjct 422 CTATAACGAATTCAAAGGACCTGAAGATAACGTTGTGTGTGGAAACACGACGCGAAAGAG 481
Query 547 TAAGACTTTTGGTGATGCGGTG-AGACAAGGGCTGAGAAATGCTGTTACTGAGGCTTCTG 605
| ||||||| |||||||||||| || ||||| ||||||||||| ||| ||||||||||||
Sbjct 482 TGAGACTTTCGGTGATGCGGTGAAG-CAAGGACTGAGAAATGCGGTTGCTGAGGCTTCTG 540
Query 606 GGACTGGAGGGTACGCTCGTGCGTCTGCAAAGGCGGGTGAATCTGAATCTGAATCAGCGT 665
||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 541 GGAGTGGAGGGTACGCTCGTGCTTCTGCAAAGGCGGGTGAATCTGAATCTGAATCCGCGT 600
Query 666 TTGTGTTGGCGAATTGTTGGAGAACTTTGAGTCCTGATTCTTGTAAACAGTGTTTGGAGA 725
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTGTGTTGGCGAATTGCTGGAGAACTTTGAGTCCTGATTCTTGTAAACAGTGTTTGGAGA 660
Query 726 ATGCCTCTGCTTCTGTGGTTAAAGGATGTTTGCCATGGTCAGAAGGACGTGCGCTTCACA 785
| || ||||||||||||||||| || ||||||||||||||||| ||||||||||||||||
Sbjct 661 ACGCGTCTGCTTCTGTGGTTAAGGGGTGTTTGCCATGGTCAGAGGGACGTGCGCTTCACA 720
Query 786 CTGGATGTTTCCTTCGGTACTCTGATCAAGATTTCTTGAATAAGATACCAAGAAACGGAA 845
|||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 721 CTGGATGTTTCCTTAGGTACTCTGATCAAGATTTCTTGAACAAGATATCAAGAAACGGAA 780
Query 846 GATCAAGAGGCTCTGTGGTAGTGATTGTGGTGTCAGTACTTAGCTCTGTGGTTGTCTTCA 905
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 781 GATCAAGAGGCTCTGTGGTAGTGATTGTGGTCTCAGTTCTTAGCTCTGTGGTTGTCTTCA 840
Query 906 TGATTGGAGTAGCAGTAAGTGTTTATATCTGCAAACGTCGGACCAT-AAAGAGGAAGAGA 964
|||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 841 TGATTGGAATAGCAGTAAGTGTTTATATCTGCAAACGTCGGACCATCAAA-AGGAAGAGA 899
Query 965 AGAGGATCAAAAGATGTTGAGAAAATGGCGAAAACACTAAAAGACAGTAGCTTGAATTTC 1024
||||||||||| |||||||| |||||||||||||| |||||||||||||||||||| |||
Sbjct 900 AGAGGATCAAATGATGTTGAAAAAATGGCGAAAACTCTAAAAGACAGTAGCTTGAACTTC 959
Query 1025 AAATACTCAACACTAGAGAAAGCCACAGGTTCTTTTGACAACGCGAACAAGCTTGGACAA 1084
|||||||||||||| ||||||||||||||||| |||||| |||| |||||||||||||||
Sbjct 960 AAATACTCAACACTGGAGAAAGCCACAGGTTCATTTGACGACGCAAACAAGCTTGGACAA 1019
Query 1085 GGCGGATTTGGAACTGTCTATAAGGGGGTTCTTCCAGACGGAAGAGATATCGCTGTGAAG 1144
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1020 GGCGGATTTGGAACTGTCTATAAGGGGGTTCTTCCAGACGGACGAGATATCGCTGTGAAG 1079
Query 1145 CGGTTATTCTTTAACAACAGACATAGAGCAACCGATTTCTACAATGAAGTCAACATGATC 1204
||||| ||||| ||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 1080 CGGTTGTTCTTCAACAACAGACACAGGGCAACAGATTTCTACAATGAAGTCAACATGATT 1139
Query 1205 AGCACTGTTGAACATAAGAACCTTGTTAGGCTGCTTGGTTGCAGCTGCTCAGGACCAGAG 1264
|||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1140 AGCACTGTTGAACACAAGAACCTTGTTAGGCTACTTGGTTGCAGTTGCTCAGGACCAGAG 1199
Query 1265 AGTCTCCTTGTCTATGAATACCTTCAGAACAAGAGCCTTGATCGATTCATCTTTGACGTG 1324
|| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1200 AGCCTCCTTGTCTATGAATACCTTCAGAACAAGAGCCTTGATCGATTCATCTTCGATGTG 1259
Query 1325 AACAGAGGGAAAACATTAGACTGGCAGAGAAGATACACGATCATCGTTGGAACCGCTGAA 1384
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1260 AACAGAGGGAAAACACTAGACTGGCAGAGAAGATACACGATCATCGTTGGGACCGCTGAA 1319
Query 1385 GGATTGGTGTATCTGCATGAGCAGTCGTCTGTGAAAATTATTCACAGAGACATAAAAGCA 1444
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1320 GGATTGGTGTATCTGCATGAGCAGTCGAGTGTGAAAATTATTCACAGAGACATAAAAGCA 1379
Query 1445 AGTAATATTCTGCTAGATTCAAAGCTTCAAGCTAAAATCGCCGATTTTGGTCTGGCGAGA 1504
|| |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1380 AGCAATATTCTTCTAGATTCAAAGCTTCAAGCTAAAATCGCCGACTTTGGACTGGCGAGA 1439
Query 1505 TCATTCCAGGACGATAAGAGCCATATTAGCACTGCCATTGCAGGGACCTTAGGTTATATG 1564
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1440 TCGTTCCAGGACGATAAGAGCCATATCAGCACTGCCATTGCAGGGACCTTAGGTTATATG 1499
Query 1565 GCTCCGGAGTACTTAGCACATGGTCAGCTAACAGAGATGGTAGACGTTTACAGCTTTGGA 1624
||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1500 GCTCCAGAGTACTTAGCACATGGTCAGCTAACAGAGATGGTAGATGTCTACAGCTTTGGA 1559
Query 1625 GTTCTTGTACTAGAGATTGTAACTGGAAAACAGAACACCAAAAGCAAAATGTCAGATTAC 1684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 GTTCTTGTACTAGAGATTGTAACTGGAAAACAGAACACCAAAAGCAAAATGTCAGATTAC 1619
Query 1685 TCAGACAGTTTGATCACAGAGGCATGGAAGCATTTTCAGTCAGGAGAGTTGGAGAAAATA 1744
|||||||||||||| ||||| |||||||||||||||||| ||||||| || ||| |||||
Sbjct 1620 TCAGACAGTTTGATTACAGAAGCATGGAAGCATTTTCAGACAGGAGATTTAGAGGAAATA 1679
Query 1745 TATGATCCAAACCTCGAT-TGGAAGAGTCAGTATGACAGTCA-CATCATCAAGAAAG-AG 1801
|||||||||||||| || ||||||| |||| |||| ||| | ||||||||| |||| ||
Sbjct 1680 TATGATCCAAACCT-GAACTGGAAGAATCAGAATGATAGT-ATCATCATCAA-AAAGGAG 1736
Query 1802 ATAGCAAGAGTTGTTCAAATAGGGCTATTGTGCACTCAAGAGATCCCTTCGCTAAGACCA 1861
||||||||||| |||||||||||||| |||||||| |||||||| || ||||||||||||
Sbjct 1737 ATAGCAAGAGTAGTTCAAATAGGGCTCTTGTGCACGCAAGAGATACCGTCGCTAAGACCA 1796
Query 1862 CCGATGTCTAAGTTATTACATATGCTAAAGAACAAAGAGGAGGTCTTGCCATTGCCGAGT 1921
||||||| ||||| || ||||||||||||||||||||||| || ||||||||||||||
Sbjct 1797 TCGATGTCAAAGTTGTTGCATATGCTAAAGAACAAAGAGGAAATCCTGCCATTGCCGAGT 1856
Query 1922 AATCCTCCGTTTATGGATGAAAGAGTCATGGAACTTCGAGATGGTTCTGATGGTGATTCA 1981
|| ||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||
Sbjct 1857 AACCCTCCGTTTATGGATGAAAGAGTAATGGAACTTCGAGATGGTTCTTATGGCGATTCA 1916
Query 1982 GCTGGTTGTGCATCTCTTGCCACTGTCTCACAAAGTTCCTTTTATGGTAGATGAGCTTTG 2041
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1917 GCTGGTTGTGCATCGCTTGCCACTGTCTCACAAAGTTCCTTTTACGGTAGATGAGCCTTG 1976
Query 2042 AAGAAGTGTATAAG 2055
||||| ||||||||
Sbjct 1977 AAGAATTGTATAAG 1990
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82579651160
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5