BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70530.1
Length=1941
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926380 jgi|Araly1|926380|scaffold_201941.1 3007 0.0
Ahg952145 jgi|Araly1|952145|scaffold_40000001.1 1099 0.0
> Ahg926380 jgi|Araly1|926380|scaffold_201941.1
Length=1992
Score = 3007 bits (1628), Expect = 0.0
Identities = 1848/1953 (95%), Gaps = 19/1953 (1%)
Strand=Plus/Plus
Query 1 ATGCCGATTCTGACTCTTCTTCTTCTTA----T--TCTGGGTTTGTTTATAAGCCCTTCT 54
||||||||||| |||||||||||||||| | ||||||||| ||||||| |||||||
Sbjct 23 ATGCCGATTCTAACTCTTCTTCTTCTTATTCTTCCTCTGGGTTTTTTTATAAACCCTTCT 82
Query 55 GTTTCAGACTCGAGAGGAGAC-ACAGTGGCTCAGATATGCAACAACAGAACAACGA-CGC 112
||||||||||||||||||| | || |||||||||||||||| |||||||||||| | |||
Sbjct 83 GTTTCAGACTCGAGAGGAG-CGACGGTGGCTCAGATATGCAGCAACAGAACAAC-ACCGC 140
Query 113 CGCAACAGAGAAGTCTCTTCGTCACCAA-TTTCCTCGCCGCCATGGACGCGGTCTCTCCA 171
|||||||||||||||||||||||| || |||||| ||||| |||||||| || ||||||
Sbjct 141 CGCAACAGAGAAGTCTCTTCGTCA-AAACTTTCCTTGCCGCTATGGACGCCGTATCTCCA 199
Query 172 CTAGTGGAAGCTAAAGGTTACGGACAAGTGGT---CAACGGTACCGGAAACT-TAACCGT 227
|| ||||||||||||||||| || |||||||| ||||| | |||||| | |||||||
Sbjct 200 CTTGTGGAAGCTAAAGGTTATGGCCAAGTGGTCAACAACGCAAACGGAAA-TCTAACCGT 258
Query 228 CTACGCTTACGGAGAGTGTATAAAAGATCTTGATAAGAAAGATTGCGACTTGTGTTTCGC 287
||||||||| ||||||||||||||||||||| |||||||||| || ||||||||||||||
Sbjct 259 CTACGCTTATGGAGAGTGTATAAAAGATCTTAATAAGAAAGACTGTGACTTGTGTTTCGC 318
Query 288 TCAGATCAAAGCTAAAGTTCCTCGTTGCTTACCTTTCCAAAAAGGTACTCGTGGTGGTCA 347
|||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||
Sbjct 319 TCAGATCAAAGCTAAAGTCCCTATTTGCTTACCTTTCCAAAGAGGTACTCGTGGTGGTCA 378
Query 348 AGTCTTCTCAGATGGTTGCTACATCAGGTACGATGACTACAATTTCTATAACGAGACGTT 407
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||
Sbjct 379 AGTCTTCTCAGATGGTTGCTACATCAGGTACGATGATTACAATTTCTTTAACGAGACCTT 438
Query 408 AAGCTTGCAAGACCGGACAGTTTGTGCTCCAAAGGAGATTACCGGAGTAAACCGGACGGT 467
| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 439 AGGCTTGCAAGATCGGACAGTTTGTGCTCCAAAGGAGATAACCGGAGTAAACCGGACGGT 498
Query 468 ATTTCGGGATAACGCTGCAGAGTTGGTTAAGAACATGAGTGTGGAGGCGGTGAGAAATGG 527
||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 499 ATTCCGGGATAACGCTGCGGAGTTGGTGAAGAACATGAGTGTGGAGGCGGTGAGAAATGG 558
Query 528 TGGATTCTATGCTGGTTTTGTGGATAGACATAACGTGACGGTTCATGGTCTGGCTCAGTG 587
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 559 TGGATTCTATGCTGGTTTTGTGGATAGACATAATGTGACGGTTCACGGTCTGGCTCAGTG 618
Query 588 TTGGGAGACTCTTAATAGAAGTGGTTGTGTTGAGTGTTTGAGTAAAGCTTCAGTGAGGAT 647
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||
Sbjct 619 TTGGGAGACTCTTAATCGTAGTGGTTGTGTTGAGTGTTTGAGTAAAGCTTCAGTGAGTAT 678
Query 648 TGGTTCTTGTTTGGTTAATGAAGAAGGTCGAGTTCTTAGTGCTGGTTGCTATATGAGGTT 707
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 679 TGGTTCTTGTTTGGTTAATGAAGAAGGTCGAGTTCTTAGTGCTGGTTGTTATATGAGATT 738
Query 708 TTCTACTCAAAAGTTTTATAACAATTCTGGAAATTCTACATCAGATGGTAATGGTGGTCA 767
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 739 TTCTACTCAAAAGTTTTATAACAATTCTGGAAATTCCACATCAGATGGTAATGGTGGTCA 798
Query 768 TAACCATTTGGGTGTGATTTTGGCGGTGACATCTTCGGTTGTGGCTTTTGTTCTGTTGGT 827
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 799 TAACCATTTGGGTGTGATTTTGGCGGTGACATCTTCGGTTGTGGCATTTGTTCTGTTGGT 858
Query 828 CTCTGCCGCTGGTTTCTTGCTTAAAAAGAGACACGCCAAGAAGCAAAGAGAGAAGAAGCA 887
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 859 CTCTGCCGCTGGTTTCTTGCTTAAAAAGAGACATGCCAAGAAGCAAAGAGAGAAGAAGCA 918
Query 888 ACTAGGGTCATTATTCATGCTTGCGAACAAATCTAATCTCTGTTTCTCCTATGAGAATCT 947
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 919 GCTAGGGTCATTATTCATGCTTGCAAACAAATCTAATCTCTGTTTCTCCTATGAGAATCT 978
Query 948 CGAGAGGGCTACCGATTACTTCAGCGACAAAAATAAGTTAGGACAAGGAGGATCTGGCTC 1007
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 979 CGAGAGGGCTACCGATTACTTCAGCGATAAAAATAAGTTAGGACAAGGAGGATCTGGCTC 1038
Query 1008 TGTCTATAAGGGAGTTCTTACTAATGGTAAGACTGTTGCAGTAAAGAGACTGTTCTTCAA 1067
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1039 TGTCTATAAGGGAGTTCTTACTAACGGTAAGACTGTTGCGGTAAAGAGACTGTTCTTCAA 1098
Query 1068 CACAAAGCAATGGGTGGATCATTTCTTCAACGAAGTTAATCTAATAAGCCAAGT-AGACC 1126
||||||||||||||||||||||||||| |||||||| ||| ||||||||||||| | | |
Sbjct 1099 CACAAAGCAATGGGTGGATCATTTCTTTAACGAAGTCAATTTAATAAGCCAAGTCA-ATC 1157
Query 1127 ACAAGAACCTTGTTAAGCTCTTGGGATGCAGCATAACTGGACCAGAGAGCCTTCTGGTCT 1186
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1158 ACAAGAACCTTGTGAAGCTCTTGGGATGCAGCATAACTGGACCAGAGAGCCTTCTGGTGT 1217
Query 1187 ATGAATACATTGCAAATCAAAGCCTCCACGACTATCTTTTCGTAAGAAAAGATGTTCAAC 1246
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1218 ATGAATACATTGCAAATCAAAGCCTCCACGACTATCTTTTTGTAAGAAAAGATGTTCAAC 1277
Query 1247 CGTTGAATTGGGCAAAGAGATTCAAGATTATACTTGGTACAGCAGAAGGAATGGCGTATC 1306
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1278 CGTTGAATTGGGCGAGGAGATTCAAGATTATACTTGGTACAGCAGAAGGAATGGCGTATC 1337
Query 1307 TTCACGAGGAGTCAAATCTTAGAATCATACATAGAGATATTAAGCTGAGTAATATCCTTT 1366
||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1338 TTCACGAGGAGTCGAATCTTAGAATCATACATAGAGACATTAAGCTGAGCAATATCCTTT 1397
Query 1367 TGGAAGATGATTTTACTCCAAGAATTGCTGATTTTGGATTGGCTAGATTGTTCCCAGAGG 1426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1398 TGGAAGATGATTTTACTCCAAGAATTGCTGATTTTGGATTGGCTAGATTGTTCCCAGAGG 1457
Query 1427 ACAAGACTCATATCAGCACTGCCATCGCCGGTACACTAGGCTACATGGCACCAGAATATG 1486
||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1458 ACAAGACTCATATTAGCACCGCCATCGCCGGGACACTAGGCTACATGGCTCCAGAATATG 1517
Query 1487 TAGTACGAGGAAAACTAACTGAGAAAGCAGACGTTTATAGTTTTGGAGTTCTTATGATTG 1546
|||||||||||||||| || ||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1518 TAGTACGAGGAAAACTGACCGAGAAAGCAGACGTTTACAGTTTCGGAGTTCTTATGATTG 1577
Query 1547 AAGTTATAACCGGAAAACGTAACAATGCCTTCGTACAAGACGCTGGTTCGATCCTACAAT 1606
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1578 AAGTTATAACCGGAAAACGTAACAACGCCTTCGTACAAGAAGCTGGTTCGATCCTACAAA 1637
Query 1607 CGGTATGGAGTCTGTACAGAACAAGCAATGTGGAAGAGGCAGTGGATCCAATCTTAGGTG 1666
||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||| || |
Sbjct 1638 CGGTATGGAGTCTGTACAGAACAAGAAATCTGGAAGAAGCAGTGGATCCAATCTTGGGGG 1697
Query 1667 ATAACTTCAACAAGATAGAAGCGTCACGGCTACTTCAAATTGGGCTTCTCTGTGTTCAAG 1726
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1698 ATAACTTCAACAAGATAGAAGCGTCACGGCTACTTCAAATCGGGCTTCTCTGCGTTCAAG 1757
Query 1727 CAGCGTTTGATCAGCGGCCTGCGATGTCTGTGGTTGTGAAAATGATGAAAGGGAGTTTGG 1786
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1758 CAGCGTTTGATCAGCGGCCTGCGATGTCTGCGGTTGTGAAAATGATGAAAGGGAGTTTGG 1817
Query 1787 AGATTCATACGCCGACGCAACCACCGTTTCTGAATCCAGGAAGTGTAGTAGAGATGAGAA 1846
||||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct 1818 AGATTCACACACCGACGCAACCGCCGTTTCTGAATCCAGGGAGTGTAGTAGAGATGAGGA 1877
Query 1847 AGATGATGATGACTCCCACGACGAATCAGTCTAATTCTTCAGGATCAAGGAGTGACTACA 1906
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1878 AGATGATGATGACTCCCACGACGAATCAGTCTAATTCTTCAGGATCGAGGAGTGACTACA 1937
Query 1907 TAACCGAGGGTTCGAGTTTCTTTGAACCTAGAT 1939
|||||||||||||||||||||| ||||||||||
Sbjct 1938 TAACCGAGGGTTCGAGTTTCTTCGAACCTAGAT 1970
> Ahg952145 jgi|Araly1|952145|scaffold_40000001.1
Length=822
Score = 1099 bits (595), Expect = 0.0
Identities = 720/778 (93%), Gaps = 17/778 (2%)
Strand=Plus/Plus
Query 1 ATGCCGATTCTGACTCTTCTTCTTCTTA----T--TCTGGGTTTGTTTATAAGCCCTTCT 54
||||||||||| |||||||||||||||| | ||||||||| ||||||| |||||||
Sbjct 23 ATGCCGATTCTAACTCTTCTTCTTCTTATTCTTCCTCTGGGTTTTTTTATAAACCCTTCT 82
Query 55 GTTTCAGACTCGAGAGGAGAC-ACAGTGGCTCAGATATGCAACAACAGAACAACGA-CGC 112
||||||||||||||||||| | || |||||||||||||||| |||||||||||| | |||
Sbjct 83 GTTTCAGACTCGAGAGGAG-CGACGGTGGCTCAGATATGCAGCAACAGAACAAC-ACCGC 140
Query 113 CGCAACAGAGAAGTCTCTTCGTCACCAA-TTTCCTCGCCGCCATGGACGCGGTCTCTCCA 171
|||||||||||||||||||||||| || |||||| ||||| |||||||| || ||||||
Sbjct 141 CGCAACAGAGAAGTCTCTTCGTCA-AAACTTTCCTTGCCGCTATGGACGCCGTATCTCCA 199
Query 172 CTAGTGGAAGCTAAAGGTTACGGACAAGTGGT---CAACGGTACCGGAAACT-TAACCGT 227
|| ||||||||||||||||| || |||||||| ||||| | |||||| | |||||||
Sbjct 200 CTTGTGGAAGCTAAAGGTTATGGCCAAGTGGTCAACAACGCAAACGGAAA-TCTAACCGT 258
Query 228 CTACGCTTACGGAGAGTGTATAAAAGATCTTGATAAGAAAGATTGCGACTTGTGTTTCGC 287
||||||||| ||||||||||||||||||||| |||||||||| || ||||||||||||||
Sbjct 259 CTACGCTTATGGAGAGTGTATAAAAGATCTTAATAAGAAAGACTGTGACTTGTGTTTCGC 318
Query 288 TCAGATCAAAGCTAAAGTTCCTCGTTGCTTACCTTTCCAAAAAGGTACTCGTGGTGGTCA 347
|||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||
Sbjct 319 TCAGATCAAAGCTAAAGTCCCTATTTGCTTACCTTTCCAAAGAGGTACTCGTGGTGGTCA 378
Query 348 AGTCTTCTCAGATGGTTGCTACATCAGGTACGATGACTACAATTTCTATAACGAGACGTT 407
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||
Sbjct 379 AGTCTTCTCAGATGGTTGCTACATCAGGTACGATGATTACAATTTCTTTAACGAGACCTT 438
Query 408 AAGCTTGCAAGACCGGACAGTTTGTGCTCCAAAGGAGATTACCGGAGTAAACCGGACGGT 467
| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 439 AGGCTTGCAAGATCGGACAGTTTGTGCTCCAAAGGAGATAACCGGAGTAAACCGGACGGT 498
Query 468 ATTTCGGGATAACGCTGCAGAGTTGGTTAAGAACATGAGTGTGGAGGCGGTGAGAAATGG 527
||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 499 ATTCCGGGATAACGCTGCGGAGTTGGTGAAGAACATGAGTGTGGAGGCGGTGAGAAATGG 558
Query 528 TGGATTCTATGCTGGTTTTGTGGATAGACATAACGTGACGGTTCATGGTCTGGCTCAGTG 587
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 559 TGGATTCTATGCTGGTTTTGTGGATAGACATAATGTGACGGTTCACGGTCTGGCTCAGTG 618
Query 588 TTGGGAGACTCTTAATAGAAGTGGTTGTGTTGAGTGTTTGAGTAAAGCTTCAGTGAGGAT 647
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||
Sbjct 619 TTGGGAGACTCTTAATCGTAGTGGTTGTGTTGAGTGTTTGAGTAAAGCTTCAGTGAGTAT 678
Query 648 TGGTTCTTGTTTGGTTAATGAAGAAGGTCGAGTTCTTAGTGCTGGTTGCTATATGAGGTT 707
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 679 TGGTTCTTGTTTGGTTAATGAAGAAGGTCGAGTTCTTAGTGCTGGTTGTTATATGAGATT 738
Query 708 TTCTACTCAAAAGTTTTATAACAATTCTGGAAATTCTACATCAGATGGTAATGGTGGT 765
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 739 TTCTACTCAAAAGTTTTATAACAATTCTGGAAATTCCACATCAGATGGTAATGGTGGT 796
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72942819175
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5