BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70540.1
Length=741
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476179 jgi|Araly1|476179|fgenesh2_kg.2__1309__AT1G70540.1 974 0.0
> Ahg476179 jgi|Araly1|476179|fgenesh2_kg.2__1309__AT1G70540.1
Length=668
Score = 974 bits (527), Expect = 0.0
Identities = 623/669 (93%), Gaps = 7/669 (1%)
Strand=Plus/Plus
Query 38 ATAAAAATGTCTACAAATCTCCACCTTGCCACCGCGGTGATCCTCCTCCTCCTGACCGCG 97
|||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1 ATAAAAATGTCTACTAATCTCCACCTTGCGACCGCGGTGGTCCTCCTCCTCCTGACCGCG 60
Query 98 AGCCAAAGCGGTGTAGCAATGGCTCAGAGGGTTATGGGAGGCGGACGCGATCCATGCTCC 157
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 61 AGCCAAAGCGGTGTAGCAATGGCTCAGCGGGTTATGGGAGGCGGGCGCGATCCATGCTCC 120
Query 158 GTGTCAGATTTCAAAGTGTTGTGCAGATCAGTGGTTAAGGGCCAAAAGAATGTTAACGCA 217
|||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 121 GTGTCAGATTTCAAGGTGTTGTGCAGATCCGTGGTGAAGGGCCAAAAGAATGTTAACGCA 180
Query 218 GCGACGGAGGTTTCCATAAGAGAGCTGATGAAAAGAACGATCAAGGCCAAAGAAGCCGCC 277
||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 GCGACAGAGGTATCCATACGAGAGCTGATGAAAAGAACGATCAAGGCCAAAGAAGCTGCC 240
Query 278 AAGATTAGCCGGAAAAGTGGAGGAGGGCTCAAAACTTGCTACTCAAACTATGATAGTGCA 337
||||||||||||||||| || ||||| |||||||||||||||||||||||||| |||||
Sbjct 241 AAGATTAGCCGGAAAAGCGGTGGAGGACTCAAAACTTGCTACTCAAACTATGACAGTGCG 300
Query 338 CTCGAAAATCTACAAAAGGCGTTGAAAAACATCAAACAAAATGATGGGTTTAGTCTTAAC 397
||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct 301 CTCGAAAATCTACAAAAGGCGTTAAAAAACATTAAACAAAATGATGGATTTAGTCTTAAC 360
Query 398 ATCAATCTTAGTGCCTCCTTGACGGACTTTGATACGTGCAATGACGCCATGGGTGGTGGT 457
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATCAATCTTAGTGCCTCCTTAACGGACTTTGATACGTGCAATGACGCCATGGGTGGTGGT 420
Query 458 ACGGCTTCGAATGTCTTCGCCAAATCCACAAGCACGTTGCATGAAATGGCTGATAATTGC 517
| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 421 AAGGCTTCGAATGTCTTCGCCAAATCCACAAGTACGTTGCACGAAATGGCTGATAATTGT 480
Query 518 TTGGCTCTCTCTACCCTTGTCAAACAATGATGATGAAGCCAAATGTGAATATTTTAATTC 577
||||||||||||||||| |||||||||| ||||| |||||| |||||||| ||||||||
Sbjct 481 TTGGCTCTCTCTACCCTCGTCAAACAATAATGATAAAGCCAGATGTGAATGTTTTAATTT 540
Query 578 GAACAAGATAACAAA-AAGGAAAATAATGAAAAAATGTTTGAGTTTACGGTAGAATTGTT 636
|||||||| |||||| || |||| ||||||||||||||||| ||||| ||||| || ||
Sbjct 541 GAACAAGAAAACAAACAAA-AAAAGAATGAAAAAATGTTTGAATTTACAGTAGATTTTTT 599
Query 637 TT---C--tttttttGACTCTTGTGTATAGTTTCGGAATGTTTTGAACATTGTGTGATTA 691
|| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 600 TTTTTCCCTTTTTTTGACTCTTGTGTACAGTTTCGGAATGTTTTGAACATTGTGTGATTA 659
Query 692 AGAGGGTTT 700
|||||||||
Sbjct 660 AGAGGGTTT 668
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27296008572
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5