BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70550.1
Length=1926
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908648 jgi|Araly1|908648|Al_scaffold_0002_1729 2191 0.0
Ahg472593 jgi|Araly1|472593|fgenesh2_kg.1__2547__AT1G23340.1 1003 0.0
> Ahg908648 jgi|Araly1|908648|Al_scaffold_0002_1729
Length=1401
Score = 2191 bits (1186), Expect = 0.0
Identities = 1332/1403 (95%), Gaps = 7/1403 (0%)
Strand=Plus/Plus
Query 198 ATGTGTTTAATAGGTTTGTTGGGAGATGTGTCAGTGACATCAAGAAGACGAACAACAATT 257
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGTGTTTAATAGGTTTGTTGGGAGATGTGTCAGTAACATCAAGAAGACGAACAACAATT 60
Query 258 CAAAACCGTATTAAATGTTGTCTTTTTGATCACTCAAGAAGAAAACAACAAGACAGCAGA 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAAAACCGTATTAAATGTTGTCTTTTTGATCACTCAAGAAGAAAACAACAAGACAGCAGA 120
Query 318 TGTTTTCATCATTCTTCACAACAAGTTTCGTTCAAGTCTGATCCGATGTTCTCCTCTAGC 377
|||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||
Sbjct 121 TGTTTTCATCATTCTTCACACCAAGTTTCGTTCAAGTCCGATACGATGTTCTCCTCTAGC 180
Query 378 TTTCTCAGATTGATTCTTTTACTCTGTCTCGTCTCTTCTTCCTTCTCCTCCACCACTTCT 437
||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||
Sbjct 181 TTTCTCAGATTGATTCTTTTACTTTGTCTCCTCTCTTCTTCCTTCTCCTCCACCGCTTCT 240
Query 438 TCCTCCAACTCCACTGCCGCCGATCAAACTCTCCGGCCGCAAGAAGAGCTCCAGAAGCTA 497
|||||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct 241 TCCTCCAATTCCACTGCTGCTGATCAAACTCTCCGGCCACAAGAAGAGCTCCAGAAGCTA 300
Query 498 ACACTGATTAGACAAGAACTCGACAAAATCAACAAGCCGGCTGTGAAAACTATTCAGAGC 557
| ||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||
Sbjct 301 AAACTGATTAGACAAGAGCTCGACAAGATCAACAAGCCGGCTGGGAAAACTATTCAGAGC 360
Query 558 TCAGATGGAGATAAAATAGATTGTGTTTCAACTCATCAGCAACCAGCTTTCGATCATCCT 617
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 361 CCAGATGGAGATGTAATAGATTGTGTTTCGACTCATCAGCAACCAGCTTTCGATCATCCT 420
Query 618 CTCTTACAAGGACAAAAACCATTGGATCCGCCTGAGATACCAAAAGGATACAGCGAAGAT 677
|||||||||||||| | |||| || ||||||||||||| || ||||| || | |||||
Sbjct 421 CTCTTACAAGGACAGAGACCAATGAATCCGCCTGAGATCCCCAAAGGTTATAAAAAAGAT 480
Query 678 GATGGA-TCATATG-A-AA-ACTCCCAGCTTTGGAGTTTATCCGGTGAGTCTTGTCCGGA 733
||| || || |||| | || | |||||||| |||||||||||||||||||||||||||||
Sbjct 481 GAT-GAGTCGTATGAAGAAGATTCCCAGCTGTGGAGTTTATCCGGTGAGTCTTGTCCGGA 539
Query 734 AGGTACGATTCCGATAAGAAGAACAACGGAACAAGACATGTTAAGAGCAAGTTCTGTCCA 793
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 540 AGGTACTATTCCGATACGAAGAACAACGGAACAAGACATGTTAAGAGCAAGTTCTGT-CA 598
Query 794 -AAGATTTGGTCGGAAAATCAGGCGCGTGAAGAGAGATTCCACAAATAACGGACACGAAC 852
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 599 GTAGATTTGGTCGGAAAATCAGGCGCGTGAGGAGAGATTCCACTAATAACGGACACGAAC 658
Query 853 ATGCGGTGGGATATGTAACCGGGAGACAATATTACGGGGCAAAAGCAAGTATTAACGTGT 912
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 659 ATGCGGTGGGATATGTAACCGGGAGACAATACTACGGAGCAAAAGCAAGTATTAACGTGT 718
Query 913 GGTCGCCACGTGTTACGAGCCAATACGAATTTAGTCTTTCTCAGATTTGGGTTATTGCCG 972
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GGTCGCCACGTGTTGCGAGCCAATACGAATTTAGTCTTTCTCAGATTTGGGTTATTGCCG 778
Query 973 GTTCGTTCACACACGATCTTAATACCATTGAAGCCGGTTGGCAAATTAGCCCGGAGTTGT 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GTTCGTTCACACACGATCTTAATACCATTGAAGCCGGTTGGCAAATTAGCCCGGAGTTGT 838
Query 1033 ACGGCGATACTTACCCAAGATTCTTTACCTATTGGACGTCCGATGCATATCGAACAACGG 1092
| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 839 ATGGGGATACTTACCCAAGATTCTTTACCTACTGGACGTCCGATGCATATCGAACAACGG 898
Query 1093 GTTGCTACAATTTGCTATGTTCCGGTTTCGTTCAAACCAACCGTCGAATCGCGATAGGAG 1152
|||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 899 GTTGCTACAATTTGTTGTGTTCCGGTTTCGTTCAAACCAACCGTCGAATCGCGATTGGAG 958
Query 1153 CTGCGATTTCTCCTAGATCTTCGTATAAAGGTGGACAATTCGATATAAGCTTATTAATTT 1212
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 959 CTGCGATTTCTCCTAGATCTTCGTATAAAGGTGGACAATTCGATATAAGCTTGTTAATTT 1018
Query 1213 GGAAGGATCCGAAGCACGGTCACTGGTGGCTACAATTCGGGTCAGGTGCATTAGTCGGTT 1272
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1019 GGAAGGATCCGAAGCACGGTCACTGGTGGCTACAATTCGGGTCAGGTGCATTAGTCGGAT 1078
Query 1273 ATTGGCCAGCGTTTTTATTCACGCATCTAAAGCAACATGGAAGCATGGTCCAATTCGGGG 1332
||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1079 ATTGGCCTGCGTTTCTATTCACGCATCTAAAGCAACATGGGAGCATGGTCCAATTCGGCG 1138
Query 1333 GCGAGATTGTGAACAACCGACCCGGCGGTTCACACACTACGACTCAAATGGGTAGTGGAC 1392
||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| |
Sbjct 1139 GCGAGATTGTGAACAACCGACCCGGTGGTTCACACACTACGACCCAAATGGGAAGTGGCC 1198
Query 1393 ATTTTGCCGGTGAAGGTTTTGGTAAAGCATCTTATTTCCGGAATCTCCAAATTGTTGACT 1452
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1199 ATTTTGCCGGTGAAGGTTTTGGTAAAGCATCTTATTTCCGGAATCTCCAAATCGTTGATT 1258
Query 1453 GGGACAACACTCTTATACCCGCTTCGAATCTAAAGATTCTCGCAGACCATCCCAATTGTT 1512
||||||| |||||||| |||| |||||||||||||||||||||||| |||||||||||||
Sbjct 1259 GGGACAATACTCTTATTCCCGTTTCGAATCTAAAGATTCTCGCAGATCATCCCAATTGTT 1318
Query 1513 ATGATATAAGAGGTGGGACGAATCGTGTGTGGGGTAACTATTTTTACTATGGAGGTCCAG 1572
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1319 ATGATATAAGAGGTGGGACGAATCGTGTGTGGGGTAACTATTTTTATTATGGAGGTCCAG 1378
Query 1573 GAAAAAACCCTAGATGTCCATGA 1595
|||||||||||||||||||||||
Sbjct 1379 GAAAAAACCCTAGATGTCCATGA 1401
> Ahg472593 jgi|Araly1|472593|fgenesh2_kg.1__2547__AT1G23340.1
Length=1628
Score = 1003 bits (543), Expect = 0.0
Identities = 968/1170 (83%), Gaps = 42/1170 (4%)
Strand=Plus/Plus
Query 465 ACTCTCCGGCCGCAAGAAGAGCTCCAGAAGCT-AACACTGATTAGACAAGAACTCGACAA 523
||||||||||| ||| ||||| | || ||||| || ||| || ||| || ||||| | ||
Sbjct 403 ACTCTCCGGCCTCAAAAAGAGATTCAAAAGCTGAA-ACTCATCAGAAAACAACTCCA-AA 460
Query 524 A-ATCAACAAGCCGGCTGTGAAAACTATTCAGAGCTCAGATGGAGATAAAATAGATTGTG 582
| ||||| || || || | || || ||||| |||||||||||||||| ||||||||||
Sbjct 461 AGATCAATAAACCAGCCATCAAGACCATTCATAGCTCAGATGGAGATACGATAGATTGTG 520
Query 583 TTTCAACTCATCAGCAACCAGCTTTCGATCATCCTCTCTTACAAGGACAAAAACCATTGG 642
|| || ||||| | || || ||||| ||||||||| | ||||||||||||| |||| |||
Sbjct 521 TTCCATCTCATAACCAGCCTGCTTTTGATCATCCTTTGTTACAAGGACAAAGACCAATGG 580
Query 643 ATCCGCCTGAGATACCAAAAGGATACAGCGAAGATGATGGATCATATGAAAACTCCCAGC 702
|||| || ||||| || | ||| || ||| |||| | | ||| |||||||| | ||||
Sbjct 581 ATCCACCGGAGATGCCCATAGGGTATAGCCAAGAAAACGAATCCTATGAAAATTTTCAGC 640
Query 703 TTTGGAGTTTATCCGGTGAGTCTTGTCCGGAAGGTACGATTCCGATAAGAAGAACAACGG 762
||||||| || |||||||||||||| |||||||||||||||||||| |||||||| || |
Sbjct 641 TTTGGAGCTTGTCCGGTGAGTCTTGCCCGGAAGGTACGATTCCGATCAGAAGAACGACTG 700
Query 763 AACAAGACATGTTAAGAGCAAGTTCTGTCCAAAGATTTGGTCGGAAAATCAGGCGCGTGA 822
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 701 AACAAGACATGTTAAGAGCAAGTTCTGTCCGTAGATTTGGTCGGAAAATCAGGCGCGTGA 760
Query 823 AGA-GAGATTCCA-CAAATAACGGACACGAACATGCGGTGGGATATGTAACCGGGA-GAC 879
|| | ||||| | || ||| || ||||| |||||||| ||||| ||| | |||| | |
Sbjct 761 -GAAGGGATTCGAGCAG-TAATGGCCACGAGCATGCGGTTGGATACGTATC-GGGAAGTC 817
Query 880 AATATTACGGGGCAAAAGCAAGTATTAACGTGTGGTCGCCACGTGTTACGAGCCAATACG 939
|||||||||| |||||||||||||| ||||||||| |||||||||| | ||||||||||
Sbjct 818 AATATTACGGAGCAAAAGCAAGTATAAACGTGTGGACGCCACGTGTCATAAGCCAATACG 877
Query 940 AATTTAGTCTTTCTCAGATTTGGGTTATTGCCGGTTCGTTCACAC-ACGATCTTAATACC 998
| |||||||| |||||||||||||| || |||||||| ||| | | ||||||||||||||
Sbjct 878 AGTTTAGTCTATCTCAGATTTGGGTCATCGCCGGTTCTTTCGC-CGACGATCTTAATACC 936
Query 999 ATTGAAGCCGGTTGGCAAATTAGCCCGGAGTTGTACGGCGATACTTACCCAAGATTCTTT 1058
|| ||||| |||||||| ||||| |||||| | ||||| || ||| | |||||||||||
Sbjct 937 ATCGAAGCTGGTTGGCAGATTAGTCCGGAGCTATACGGAGACACTAATCCAAGATTCTTC 996
Query 1059 ACCTATTGGACGTCCGATGCATATCGAA-CAACGGGTTGCTACAATTTGCTATGTTCCGG 1117
|||||||||||||| ||||| || | || |||| || ||||| || || |||||||| ||
Sbjct 997 ACCTATTGGACGTCGGATGCCTACC-AAGCAACAGGATGCTATAACTTACTATGTTCTGG 1055
Query 1118 -TTTCGTTCAAACCAACCGTCGAATCGCGATAGGAGCTGCGATTTCTCCTAGAT-CTTCG 1175
||| |||||||| ||| ||||||||| || ||||| || ||||| || | | | |||
Sbjct 1056 GTTT-GTTCAAACAAACAATCGAATCGCAATCGGAGCGGCAATTTCACCC-GTTTCGTCG 1113
Query 1176 TATAAAGGTGGACAATTCGATATAAGCTTATTAATTTGGAAGGATCCGAAGCACGGTCAC 1235
|||||||||||||||||||||||||| ||||| || ||||||||||| ||||| || |||
Sbjct 1114 TATAAAGGTGGACAATTCGATATAAGTTTATTGATATGGAAGGATCCAAAGCATGGACAC 1173
Query 1236 TGGTGGCTACAATTCGGGTCAGGTGCATTAGTCGGTTATTGGCCAGCGT-T-TTTATTCA 1293
|||||||| ||||||||||| ||| || ||||||| |||||||| ||| | ||| ||||
Sbjct 1174 TGGTGGCTCCAATTCGGGTCGGGTACACTAGTCGGATATTGGCC--CGTATCTTTGTTCA 1231
Query 1294 CGCATCTAA-AGCAACATGGAAGCATGGTCCAATTCGGGGGCGAGATTGTGAACA-ACCG 1351
| || || | || | ||||||| ||||||||| ||||| |||||||| ||||||| || |
Sbjct 1232 CACACCTGAGAG-AGCATGGAAACATGGTCCAGTTCGGTGGCGAGATAGTGAACACAC-G 1289
Query 1352 ACCCGGCGGTTCACACACTACGACTCAAATGGGTAGTGGACATTTTGCCGGTGAAGGTTT 1411
||| || |||||||| ||| ||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1290 ACCTGGTGGTTCACATACTTCGACTCAAATGGGCAGTGGCCATTTTGCCGGTGAAGGTTT 1349
Query 1412 TGGTAAAGCATCTTA-TTTCCGGAATCTCCAAATTGTTGACTGGGACAACACTCTTATAC 1470
||| ||||| ||||| ||| ||||||| ||||| || || |||||||| |||||||| |
Sbjct 1350 TGGAAAAGCGTCTTACTTTA-GGAATCTACAAATGGTAGATTGGGACAATACTCTTATTC 1408
Query 1471 CCGCT-TCGAATCT-AAAGATTCTCGCAGACCATCCCAATTGTTATGATATAAGAGGTGG 1528
| | | || ||||| |||| ||||||| || ||||| ||||||||||| |||||||| ||
Sbjct 1409 C-GATATCTAATCTTAAAG-TTCTCGCGGATCATCCGAATTGTTATGACATAAGAGGAGG 1466
Query 1529 GACG-AATC-GTGTGTGGGGTAACTATTTTTACTATGGAGGTCCAGGAAAAAACCCTAGA 1586
| | || | |||| |||||||||||||||||||| ||||| || || |||||| | | |
Sbjct 1467 -A-GTAAACCGTGTTTGGGGTAACTATTTTTACTACGGAGGACCGGGTAAAAACTCGAAA 1524
Query 1587 TGTCCAT-GAAGAATCAAG-AAAACAAAAG 1614
||||||| || ||| ||| |||| |||||
Sbjct 1525 TGTCCATAGA-GAA--AAGCAAAA-AAAAG 1550
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72371465500
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5