BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70560.1
Length=1399
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476182 jgi|Araly1|476182|fgenesh2_kg.2__1312__AT1G70560.1 2182 0.0
Ahg335577 jgi|Araly1|335577|fgenesh1_pg.C_scaffold_1002142 575 3e-163
> Ahg476182 jgi|Araly1|476182|fgenesh2_kg.2__1312__AT1G70560.1
Length=1401
Score = 2182 bits (1181), Expect = 0.0
Identities = 1338/1411 (95%), Gaps = 22/1411 (2%)
Strand=Plus/Plus
Query 1 ATTAAACACTATACAAACGACCAAACCAAGAAGAAGAAGATGGTGAAACTGGAGAACTCG 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1 ATTAAACACTATACAAACGACCAAACCAAGAAGAAGAAGATGGTGAAATTGGAGAACCCG 60
Query 61 AGGAAACCCGAAAAAATTTCGAACAAGAACATCCCCATGTCCGATTTCGTGGTCAATCTG 120
| |||||||||||| |||||||||||||||||||| ||||||||||||| |||||| ||
Sbjct 61 AAGAAACCCGAAAACGTTTCGAACAAGAACATCCCCTTGTCCGATTTCGTCGTCAATTTG 120
Query 121 GATCATGGTGATCCAACGGCGTACGAAGAATACTGGAGGAAGATGGGTGACAGGTGTACG 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 GATCATGGTGATCCAACGGCGTACGAGGAATACTGGAGGAAGATGGGTGACAGGTGTACG 180
Query 181 GTGACGATACGTGGTTGTGATCTCATGAGTTACTTCAGCGACATGACGAACTTGTGTTGG 240
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 181 GTGACGATACGTGGTTGTGATCTTATGAGTTACTTCAGCGACTTGACGAACTTGTGTTGG 240
Query 241 TTCCTTGAGCCAGAGCTTGAAGATGCGATCAAGGACTTGCACGGTGTTGTTGGTAACGCT 300
|||||||||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 241 TTCCTTGAGCCAGAGCTTGAAGATGCGATCAAGGACTTGCACGGTGCGGTAGGAAACGCT 300
Query 301 GCGACGGAGGATCGGTACATAGTGGTTGGGACCGGTTCGACGCAGCTTTGTCAAGCCGCC 360
|||||||| || || ||||| ||||| |||||||| |||||||||||||||||||| |||
Sbjct 301 GCGACGGAAGACCGATACATCGTGGTCGGGACCGGCTCGACGCAGCTTTGTCAAGCGGCC 360
Query 361 GTCCACGCACTCTCTTCACTAGCCAGGAGTCAACCTGTCAGCGTCGTCGCCGCCGCTCCT 420
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 361 GTCCACGCACTATCTTCACTAGCCAGGACTCAACCTGTCAGCGTCGTCGCCGCCGCTCCT 420
Query 421 TTTTACTCCACATATGTGGAGGAGACGACATATGTTCGGTCGGGTATGTACAAGTGGGAA 480
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTTTATTCCACATATGTGGAGGAGACGACATATGTTCGGTCGGGTATGTACAAGTGGGAA 480
Query 481 GGAGACGCATGGGGTTTCGACAAAAAGGGTCCGTACATCGAGCTAGTGACGTCACCTAAT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GGAGACGCATGGGGTTTCGACAAAAAGGGTCCGTACATCGAGCTAGTGACGTCACCTAAT 540
Query 541 AACCCTGACGGAACCATCAGAGAGACGGTGGTGAACCGTCCAGACGACGACGAAGCCAAA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AACCCTGACGGAACCATCAGAGAGACGGTGGTGAACCGTCCAGACGACGACGAAGCCAAA 600
Query 601 GTGATCCATGACTTTGCTTATTACTGGCCCCACTACACTCCCATCACTCGCCGTCAAGAC 660
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTGATCCATGACTTTGCCTACTACTGGCCCCACTACACTCCCATCACTCGCCGTCAAGAT 660
Query 661 CATGACATCATGCTCTTCACTTTCTCCAAGATCACAGGCCACGCTGGGTCCCGTATTGGG 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 661 CATGACATCATGCTCTTCACTTTCTCCAAGATCACAGGCCACGCTGGGTCCCGTATCGGG 720
Query 721 TGGGCATTGGTGAAGGACAAGGAGGTAGCTAAGAAGATGGTTGAGTATATTATTGTGAAC 780
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 721 TGGGCATTGGTGAAGGACAAGGAGGTAGCTAAGAAGATGGTTGAGTATATAATTGTGAAC 780
Query 781 TCGATTGGTGTGTCTAAGGAGTCACAGGTTCGAACAGCTAAGATACTCAACGTTCTAAAG 840
|| |||||||| |||||||||||||| |||||||| |||||||||||||| ||||| |||
Sbjct 781 TCCATTGGTGTATCTAAGGAGTCACAAGTTCGAACCGCTAAGATACTCAAAGTTCTTAAG 840
Query 841 GAGACTTGTAAGAGCGAGTCCGA-G--TCTGAGAATTTCTTCAAGTATGGTCGTGAGATG 897
||||||||||| || |||||||| | ||||||||||||||||||||||||||| | |||
Sbjct 841 GAGACTTGTAATAGTGAGTCCGACGAGTCTGAGAATTTCTTCAAGTATGGTCGTAAAATG 900
Query 898 ATGAAGAATCGGTGGGAGAAGCTACGTGAAGTTGTGAAAGAGAGCGATGCTTTCACTCTT 957
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 901 ATGAAGAATCGATGGGAGAAGCTACGTGAAGTGGTGAAAGAGAGCGATGCTTTCACTCTT 960
Query 958 CCCAAGTACCCTGAAGCATTTTGCAACTACTTTGGAAAATCACTCGAATCTTACCCTGCG 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CCCAAGTACCCTGAAGCATTTTGCAACTACTTTGGAAAATCACTCGAATCTTACCCTGCG 1020
Query 1018 TTTGCGTGGCTAGGGACGAAGGAAGAGACGGATCTGGTAAGTGAATTGAGGAGACACAAG 1077
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1021 TTTGCGTGGCTAGGGACGAAGGAAGAGACGGATCTGGTTAGTGAATTGAGGAGACACAAG 1080
Query 1078 GTAATGAGCAGAGCTGGAGAGCGTTGTGGATCTGACAAGAAGCATGTCCGAGTCAGCATG 1137
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GTAATGTGCAGAGCTGGAGAACGTTGTGGATCTGACAAGAAGCATGTCCGAGTCAGCATG 1140
Query 1138 CTTAGTCGTGAAGACGTTTTCAATGTCTTTCTCGAGAGACTCGCCAACATGAAGCTCATT 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 CTTAGTCGTGAAGACGTTTTCAATGTCTTTCTCGAGAGACTCGCCAACATGAAGCTCATT 1200
Query 1198 AAAAGCATTGACCTTTAGATAAGCAAGCGAATATAA-CGCATATAACGCCTTATATA-TA 1255
|||||||||||||||||||||| ||||| |||||||||||||||||| | ||
Sbjct 1201 AAAAGCATTGACCTTTAGATAA---------TATAAGCGCATATAACGCCTTATA-ACTA 1250
Query 1256 A-AAGACTTTTTAGTTTTTAGCTTACCCTAAAGTTATCT-A-TATA--TAAGTATGTAGA 1310
| ||||||||||||||||||||||||||||||||||||| | |||| ||| ||||||||
Sbjct 1251 AGAAGACTTTTTAGTTTTTAGCTTACCCTAAAGTTATCTGACTATAAATAAATATGTAGA 1310
Query 1311 ACTAAAGAGGTAGAAC--ctctctctctctATGTTTATGGCCTTTTGGCCCTATGTGAAA 1368
|| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 ACCAAAGAAGTAGAACTTCTCTCTCTCTCTATGTTTATGGCCTTTTGGCCCTATGTGAAA 1370
Query 1369 TATGAAGGTGAAACTGTTCTAGTTCTTAGAT 1399
||| ||| ||||||||||||||||||| |||
Sbjct 1371 TATAAAGATGAAACTGTTCTAGTTCTTTGAT 1401
> Ahg335577 jgi|Araly1|335577|fgenesh1_pg.C_scaffold_1002142
Length=1164
Score = 575 bits (311), Expect = 3e-163
Identities = 855/1109 (77%), Gaps = 72/1109 (6%)
Strand=Plus/Plus
Query 113 TCAATCTGGATCATGGTGATCCAACGGCG-TACGAAGAATACTGGAGGAAGATG-GGTGA 170
||||||| ||||| || ||||| |||||| | | |||| || |||| ||||| | | ||
Sbjct 74 TCAATCTTGATCAAGGAGATCCGACGGCGTTTC-AAGAGTATTGGATGAAGAAGAAG-GA 131
Query 171 CAGGTGTACGGTGACGATACGTGGTTGTGATCTCATGAGTTACTTCAGCGACATGACGAA 230
|||||||||||| ||||| | || ||||| ||||||||||||||||| | |||||
Sbjct 132 TAGGTGTACGGTGGTGATACCAGCATGGGATCTGATGAGTTACTTCAGCGATACAACGAA 191
Query 231 CTTGTGTTGGTTCCTTGAGCCAGAGCTTGAAG-ATGCGATCAAGGAC-TTGCACGGTGTT 288
| ||||||||||||| ||||||||||||| || | |||||||||| | ||||| ||||
Sbjct 192 CGTGTGTTGGTTCCTAGAGCCAGAGCTTG-AGAAGGCGATCAAGG-CGTTGCATGGTGCA 249
Query 289 GTTGGTAACGCTGCGACGGAGGATCGGTACATAGTGGTTGGGACCGGTTCGACGCAGCTT 348
| ||||| || || || ||||| || ||||| ||||| ||||| || ||| | ||||||
Sbjct 250 ATCGGTAATGCAGCTACCGAGGAACGCTACATCGTGGTGGGGACTGGCTCGTCACAGCTT 309
Query 349 TGTCAAGCCGCCGTCCACGCACTCTCTTCACTAGCCAGGAGTC-AACCTGTCAGCGTCGT 407
||||| ||||| | || || || || || | | | ||| ||||||||||| ||||
Sbjct 310 TGTCAGGCCGCTTTGTTTGCTCTTTCGTCGCTCTCTAAG-GTCAAACCTGTCAGCATCGT 368
Query 408 CGCCGCCGCTCCTTTTTACTCCACATATGTGGAGGAGACGA-CATATGTTCGGTCG--GG 464
|| || | ||||| |||||||||||| ||||||||| | | | ||||||| ||| |
Sbjct 369 CGTAGCGGTTCCTTATTACTCCACATACGTGGAGGAGGC-ATCGTATGTTCAATCGTCGC 427
Query 465 TATGTACAAGTGGGAAGGAGACGCATGG-GGTTTCGACAA-AAAGGGTCCGTACATCGAG 522
|| ||||| ||||||||||||||| || |||| ||||| ||| || ||||| || |||
Sbjct 428 TA--TACAAATGGGAAGGAGACGCAAGGACGTTT-GACAACAAA-GGACCGTATATAGAG 483
Query 523 CTAGTGACGTCACCTAATAACCCTGACGGAACCATCAGAGAGACGGTGGTGAACCGTCCA 582
| ||||||||||| || |||||||| || ||||| |||||| |||||||||||||| |
Sbjct 484 TTGGTGACGTCACCGAACAACCCTGATGGGACCATGAGAGAGCCGGTGGTGAACCGT--A 541
Query 583 GACGACGACGAAGCCAAAGTGATCCATGACTTTGCTTATTACTGGCCCCACTACACTCCC 642
| | || || | ||||||||||| ||||| || ||||||||||| ||||||||||||
Sbjct 542 G--G--GAGGATGGGAAAGTGATCCACGACTTCGCGTATTACTGGCCACACTACACTCCC 597
Query 643 ATCACTCGCCGTCAAGACCATGACATCATGCTCTTCACTTTCTCCAAGATCACAGGCCAC 702
|||||||||||||||||||||||| | ||||||||||| |||||||| ||||| ||||||
Sbjct 598 ATCACTCGCCGTCAAGACCATGACCTTATGCTCTTCACCTTCTCCAAAATCACTGGCCAC 657
Query 703 GCTGGGTCCCGTATTGGGTGGGCATTGGTGAAGGACA-AGGAGGTAGCTAAGAAGATGGT 761
|||||||| || ||||||||||| || |||||||||| || |||| ||||||||||||||
Sbjct 658 GCTGGGTCACGCATTGGGTGGGCGTTAGTGAAGGACATAG-AGGTTGCTAAGAAGATGGT 716
Query 762 TG-AGTATATTATTG-TGAACTCGATTGGTGTGTCTAAGGAGTCACAGGTTCGAAC-AGC 818
| | || ||| | ||||| ||||||||||| ||||||||||| |||| | | |
Sbjct 717 -GCACTAC-TTAACAATAAACTCCATTGGTGTGTCGAAGGAGTCACAAACTCGAGCCA-C 773
Query 819 TA-AGATACTCAACGTTCTAAAGGAGACTTGTAAGAGCGAGTCCGAGTCTGAGAATTTCT 877
|| | || ||||||| || | | || ||| || | || | || |||| ||||
Sbjct 774 TACA-ATTCTCAACGAACTGACCAAAACCTGTCGGA-C---TCA-A-TCGGAGAGCTTCT 826
Query 878 TCAAGTATGG-T-CGTGAGATGATGAAGA-ATCGGTGGGAGAAGCTACGTGAAGTTGT-G 933
|| ||||||| | || || | ||||||| | |||||||||| |||||| || || || |
Sbjct 827 TCGAGTATGGCTACGAGA-A-GATGAAGTCA-CGGTGGGAGAGGCTACGAGAGGTCGTTG 883
Query 934 AAAGAGAGCGATGCTTTCACTCTTCCC-AAGTACCCTGAAGCATTTTGCAACTACTTTGG 992
|| | | || || |||||||| ||| || |||||| |||| || ||||||| ||||||
Sbjct 884 AATCCG-GTGACGCATTCACTCT-CCCTAATTACCCTCAAGCCTTCTGCAACTTCTTTGG 941
Query 993 -AAAATCA-CTCGAATCTTAC-CCTGCGTTTGCGTGGCTAGGG-ACGAAG-G-AAGAGAC 1046
|||| || ||| | ||| | ||||||||||| ||| | ||| | ||| | || |||
Sbjct 942 CAAAACCATCTCCA--CTT-CTCCTGCGTTTGCCTGGTTGGGGTATAAAGAGGAA-AGA- 996
Query 1047 GGATCT-GGTAAGTGAATTGA-GGAGACACAAGGTAATGA-GCAGAGCTGGAGAGCGTTG 1103
| |||| || |||| |||| ||||| | ||||| ||| | |||| || || || ||
Sbjct 997 G-ATCTTGG-AAGTCTCTTGAAGGAGA-AGAAGGTTTTGACG-AGAGGAGGGGACCGATG 1052
Query 1104 TGGATCTGACAAGAAGCATGTCCGAGTCAGCATGCTTAGTCGTGAAGACGT-TTTCAATG 1162
||| | ||| | |||| | ||||| |||||||||||||| || || |||| ||| | |
Sbjct 1053 TGGTTGTGATAGGAAGTACGTCCGTGTCAGCATGCTTAGCCGCGACGACGACTTTGAC-G 1111
Query 1163 TCTTTCTCGAGAGACTCGCCAACATGAAG 1191
||||| || | |||||||||| ||| |||
Sbjct 1112 TCTTTATCCACAGACTCGCCACCATCAAG 1140
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52297906385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5