BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70580.1
Length=1795
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926386 jgi|Araly1|926386|scaffold_201947.1 2464 0.0
Ahg472589 jgi|Araly1|472589|fgenesh2_kg.1__2543__AT1G23310.1 1622 0.0
> Ahg926386 jgi|Araly1|926386|scaffold_201947.1
Length=1490
Score = 2464 bits (1334), Expect = 0.0
Identities = 1441/1492 (97%), Gaps = 10/1492 (1%)
Strand=Plus/Plus
Query 106 TTGAAAAGTAAATCCTGGAAATGTCTCTCAAGGCGTTAGACTACGAGTC-CTTGAATGAA 164
|||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||
Sbjct 2 TTGAAAAGTAAATCCTGGAAATGTCTCTCAAGGCATTAGACTACGAGTCGC-TGAATGAA 60
Query 165 AACGTGAAGAATTGTCAGTATGCAGTCAGAGGTGAACTTTATCTTCGTGCTTCTGAGCTT 224
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 AACGTCAAGAATTGTCAGTATGCAGTCAGAGGTGAACTTTATCTCCGTGCTTCTGAGCTT 120
Query 225 CAGAAAGAAGGCAAAAAGATTATTTTCACAAATGTTGGAAACCCTCATGCTTTAGGACAG 284
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CAGAAAGAAGGCAAAAAGATTATTTTCACAAATGTTGGAAACCCTCATGCTTTAGGACA- 179
Query 285 AAA-CCTCTGACTTTTCCTCGTCAGGTGGTTTCTTTATGCCAAGCACCATTTCTGTTAGA 343
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 180 AAAGCCTCTGACTTTTCCTCGTCAGGTGGTTGCTTTATGCCAAGCACCATTTCTGCTAGA 239
Query 344 TGATCCAAATGTTGGTATGATATTCCCAGCAGATGCTATTGCAAGAGCTAAGCATTATCT 403
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGATCCAAATATTGGTATGATATTCCCAGCAGATGCTATTGCAAGAGCTAAGCATTATCT 299
Query 404 TTCCTTGACTTCTGGTGGTCTTGGTGCTTACAGTGACTCAAGAGGTCTTCCGGGAGTTCG 463
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 300 TTCTTTGACTTCTGGTGGTCTTGGTGCTTACAGTGACTCAAGAGGCCTTCCGGGAGTTCG 359
Query 464 GAAAGAAGTCGCTGAGTTCATTGAACGGCGTGATGGATATCCAAGCGATCCAGAACTCAT 523
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 360 GAAAGAAGTTGCTGAGTTCATTGAACGGCGTGATGGATATCCAAGCGACCCAGAACTCAT 419
Query 524 ATTTCTAACTGATGGAGCGAGCAAAGGTGTGATGCAAATCTTGAATTGTGTCATACGCGG 583
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ATTTCTAACTGATGGAGCTAGCAAAGGTGTGATGCAAATCTTGAATTGTGTCATACGCGG 479
Query 584 TCAGAAAGACGGAATTCTGGTTCCAGTTCCACAGTATCCACTCTACTCGGCTACTATATC 643
||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 480 TCAGAAAGATGGAATTCTGGTTCCAGTTCCGCAATATCCACTCTACTCGGCTACTATATC 539
Query 644 TCTGTTAGGTGGTACTCTTGTTCCTTACTATCTTGAAGAGTCTGAAAACTGGGGACTTGA 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TCTGTTAGGTGGTACTCTTGTTCCTTACTATCTTGAAGAGTCTGAAAACTGGGGACTTGA 599
Query 704 TGTTAACAACCTTCGCCAATCTGTTGCTCAAGCTCGCTCTCAAGGAATAACAGTAAGGGC 763
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 600 TGTTAACAACCTTCGCCAATCTGTTGCTCAGGCTCGCTCTCAAGGAATAACAGTAAGGGC 659
Query 764 AATGGTGATTATTAACCCCGGAAACCCAACTGGCCAGTGTCTTAGCGAAGCTAACATAAG 823
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 660 AATGGTGATCATTAACCCCGGAAACCCAACTGGCCAGTGTCTTAGCGAAGCTAACTTAAG 719
Query 824 AGAGATACTACGGTTCTGTTGTGATGAGAGATTAGTTCTTCTCGGAGACGAAGTGTATCA 883
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 720 AGAGATATTACGGTTCTGTTGTGATGAGAGATTAGTTCTTCTTGGAGACGAAGTGTATCA 779
Query 884 GCAAAATATATACCAAGATGAACGTCCCTTTATCAGTTCCAAGAAGGTTTTGATGGATAT 943
|||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 780 GCAAAACATATACCAAGATGAGCGTCCTTTTATCAGTTCCAAGAAGGTTTTGATGGATAT 839
Query 944 GGGAGCACCGATCAGCAAGGAAGTTCAGCTCATATCTTTCCACACCGTTTCCAAAGGATA 1003
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 840 GGGAGCACCGATCAGCAAGGAAGTTCAGCTTATATCTTTCCACACCGTTTCCAAAGGATA 899
Query 1004 CTGGGGCGAATGTGGGCAACGGGGAGGTTACTTTGAGATGACAAATATCCCTCCCAGGAC 1063
||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 900 CTGGGGCGAGTGTGGGCAACGAGGCGGTTACTTTGAGATGACAAATATCCCTCCCAGGAC 959
Query 1064 CGTTGAGGAGATATACAAGGTGGCCTCTATAGCTCTCAGCCCCAACGTCTCTGCGCAGAT 1123
||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct 960 CGTTGAGGAGATATACAAGGTTGCCTCTATAGCTCTCAGTCCCAACGTCTCTGCACAGAT 1019
Query 1124 ATTTATGGGTTTAATGGTTAGCCCACCAAAGCCTGGAGACATTTCATATGACCAATTCGT 1183
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1020 ATTTATGGGTTTAATGGTTAGCCCACCAAAGCCTGGAGACATTTCTTATGACCAATTCGT 1079
Query 1184 TCGTGAGAGCAAGGGAATACTAGAATCACTGAGAAGAAGAGCAAGGATGATGACTGATGG 1243
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TCGCGAAAGCAAGGGAATACTAGAATCACTGAGAAGAAGAGCAAGGATGATGACTGATGG 1139
Query 1244 ATTCAACAGCTGCAAAAACGTCGTCTGTAATTTCACAGAAGGTGCTATGTATTCATTCCC 1303
||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1140 ATTCAACAGTTGCAAAAACGTCGTCTGTAATTTCACAGAAGGTGCTATGTATTCGTTTCC 1199
Query 1304 TCAAATAAAGTTGCCGTCGAAAGCAATCCAAGCAGCAAAACAAGCCGGAAAAGTCCCTGA 1363
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1200 TCAAATAAAGTTACCGTCGAAAGCAATCGAAGCAGCAAAACAAGCCGGAAAAGTCCCTGA 1259
Query 1364 CGTTTTCTACTGCCTTAAGCTCTTAGAAGCCACAGGAATCTCCACAGTTCCAGGCTCTGG 1423
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 TGTTTTCTACTGCCTTAAGCTCTTAGAAGCCACAGGAATCTCCACAGTTCCAGGCTCTGG 1319
Query 1424 ATTTGGACAAAAAGAAGGGGTGTTTCATTTAAGGACAACAATTCTGCCAGCAGAAGAAGA 1483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 ATTTGGACAAAAAGAAGGGGTGTTTCATTTAAGGACAACAATTCTGCCAGCAGAAGAAGA 1379
Query 1484 AATGCCAGAGATTATGGACAGTTTCAAAAAGTTCAATGATGAGTTTATGTCTCAGTACGC 1543
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1380 AATGCCAGAGATTATGGACAGTTTCAAAAAGTTCAATGATGAGTTCATGTCTCAGTACGG 1439
Query 1544 TGATAA---CTTTGGTTACTCCAGAATGTGAAAAAGAAA-GGACTTA-GAGT 1590
|||||| ||||||||||||||||||||||||| |||| ||||| | ||||
Sbjct 1440 TGATAATAACTTTGGTTACTCCAGAATGTGAAAA-GAAAAGGACTCAAGAGT 1490
> Ahg472589 jgi|Araly1|472589|fgenesh2_kg.1__2543__AT1G23310.1
Length=1978
Score = 1622 bits (878), Expect = 0.0
Identities = 1265/1455 (87%), Gaps = 14/1455 (1%)
Strand=Plus/Plus
Query 124 AAATGTCTCTCAAGGCGTTAGACTACGAGTCCT-TGAATGAAAACGTGAAGAATTGTCAG 182
||||| |||||||||| ||||||||||| | || ||||||||||||| ||||| |||||
Sbjct 333 AAATGGCTCTCAAGGCATTAGACTACGA-TACTCTGAATGAAAACGTCAAGAAGTGTCAA 391
Query 183 TATGCAGTCAGAGGTGAACTTTATCTTCGTGCTTCTGAGCTTCAGAAAGAAGGCAAAAAG 242
||||| |||||||||||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct 392 TATGCCGTCAGAGGTGAACTCTATCTCCGAGCTTCTGAGCTTCAGAAAGAAGGCAAAAAG 451
Query 243 ATTATTTTCACAAATGTTGGAAACCCTCATGCTTTAGGACAGAAACC-TCTGACTTTTCC 301
||||| |||||||| ||||| |||||||| |||||||||||||| || | |||| |||||
Sbjct 452 ATTATCTTCACAAACGTTGGGAACCCTCACGCTTTAGGACAGAAGCCAT-TGACATTTCC 510
Query 302 TCGTCAGGTGGTTTC-TTTATGCCAAGCACCATTTCTGTTAGATGATCCAAATGTTGGTA 360
||| ||||||||| | || |||||||| || ||||| ||||||| || |||||||| |
Sbjct 511 TCGCCAGGTGGTTGCGCTT-TGCCAAGCTCCGTTTCTACTAGATGACCCCAATGTTGGAA 569
Query 361 TGATATTCCCAGCAGATGCTATTGCAAGAGCTAAGCATTATCTTTCCTTGACTTCTGGTG 420
|| |||| ||||| ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 570 TGCTATTTCCAGCTGATGCTATTGCAAGAGCTAAGCATTATCTTTCCTTGACTTCAGGCG 629
Query 421 GTCTT-GGTGCTTACAGTGACTCAAGAGGTCTTCCGGGAGTTCGGAAAGAAGTCGCTGAG 479
|| || ||||||||||||||||||||||| ||||| |||||| ||||||| || ||||||
Sbjct 630 GT-TTAGGTGCTTACAGTGACTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTGAG 688
Query 480 TTCATTGAACGGCGTGATGGATATCCAAGCGATCCAGAACTCATATTTCTAACTGATGGA 539
|||||| ||||||||||||| |||||||| || ||||||||||| ||||| |||||||||
Sbjct 689 TTCATTCAACGGCGTGATGGCTATCCAAGTGACCCAGAACTCATCTTTCTCACTGATGGA 748
Query 540 GCGAGCAAAGGTGTGATGCAAATCTTGAATTGTGTCATACGCGGTCA-GAAAGACGGAAT 598
|| |||||||||||||||||||||||||| ||||| ||||||||| | | | ||||| ||
Sbjct 749 GCTAGCAAAGGTGTGATGCAAATCTTGAACTGTGTTATACGCGGTGATGGA-GACGGGAT 807
Query 599 TCTGGTTCCAGTTCCACAGTATCCACTCTACTCGGCTACTATATCTCTGTTAGGTGGTAC 658
||| ||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||||
Sbjct 808 TCTAGTTCCGGTTCCACAGTATCCACTCTACTCAGCTACCATATCACTGTTAGGTGGTAC 867
Query 659 TCTTGTTCCTTACTATCTTGAAGAGTCTGAAAACTGGGGACTTGATGTTAACAACCTTCG 718
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 868 TCTTGTTCCTTACTATCTTGATGAGTCTGAAAACTGGGGACTTGATGTTAATAACCTTCG 927
Query 719 CCAATCTGTTGCTCAAGCTCGCTCTCAAGGAATAACAGTAAGGGCAATGGTGATTATTAA 778
||||| |||||||| ||||| |||||||| ||||| ||||||||||||||||| |||||
Sbjct 928 ACAATCCGTTGCTCAGGCTCGTTCTCAAGGGATAACTGTAAGGGCAATGGTGATCATTAA 987
Query 779 CCCCGGAAACCCAACTGGCCAGTGTCTTAGCGAAGCTAACATAAGAGAGATACT-ACGGT 837
||| || ||||||||||| |||||||| |||||||||||||||||||||||| | | | |
Sbjct 988 CCCTGGGAACCCAACTGGTCAGTGTCTAAGCGAAGCTAACATAAGAGAGATATTGAAG-T 1046
Query 838 TCTGTTGTGATGAGAGATTAGTTCTTCTCGGAGACGAAGTGTATCAGCAAAATATATACC 897
|||||| | | |||| ||| |||||||| |||||||| || |||||||| || ||||| |
Sbjct 1047 TCTGTTATAACGAGAAATTGGTTCTTCTGGGAGACGAGGTTTATCAGCAGAACATATATC 1106
Query 898 AAGATGAACGTCCCTTTATCAGTTCCAAGAAGGTTTTGATGGATATGGGAGCACCGATCA 957
| ||||| |||||||||||||| |||||||||||||||||||| ||||| ||||| |||
Sbjct 1107 AGGATGAGCGTCCCTTTATCAGCTCCAAGAAGGTTTTGATGGAAATGGGTTCACCGTTCA 1166
Query 958 GCAAGGAAGTTCAGCTCATATCTTTCCACACCGTTTCCAAAGGATACTGGGGCGAATGTG 1017
|||||| ||||||||| ||||||| ||||| || || |||||||| |||||||||||||
Sbjct 1167 GCAAGGGAGTTCAGCTTGTATCTTTTCACACAGTCTCTAAAGGATATTGGGGCGAATGTG 1226
Query 1018 GGCAACGGGGAGGTTACTTTGAGATGACAAATATCCCTCCCAGGACCGTTGAGGAGATAT 1077
| || || || || |||||||||||||| || ||||||| ||| |||||||||||||
Sbjct 1227 GACAGCGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGGGTTGTTGAGGAGATAT 1286
Query 1078 ACAAGGTGGCCTCTATAGCTCTCAGCCCCAACGTCTCTGCGCAGATATTTATGGGTTTAA 1137
||||||| | || || || ||||||||||| ||| |||| ||||| ||||||||||| |
Sbjct 1287 ACAAGGTTTCATCAATTGCCCTCAGCCCCAATGTCCCTGCCCAGATCTTTATGGGTTTGA 1346
Query 1138 TGGTTAGCCCACCAAAGCCTGGAGACATTTCATATGACCAATTCGTTCGTGAGAGCAAGG 1197
||||||| || ||||||||||||||||||||||||||||| ||| ||||| |||||||
Sbjct 1347 TGGTTAGTCCTCCAAAGCCTGGAGACATTTCATATGACCAGTTCACCCGTGAAAGCAAGG 1406
Query 1198 GAA-TACTAGAATCACTGAGAAGAAGAGCAAGGATGATGACTGATGGATTCAACAGCTGC 1256
| | | || ||||| |||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1407 GGACT-CTTGAATCTTTGAGAAGAAGAGCAAGAATCATGACTGATGGATTCAACAGCTGC 1465
Query 1257 AAAAACGTCGTCTGTAATTTCACAGAAGGTGCTATGTATTCATTCCCTCAAATAAAGTTG 1316
|||||| |||| || ||||||||||||||||| |||||||| || ||||||||| | |
Sbjct 1466 AAAAACATCGTGTGCAATTTCACAGAAGGTGCAATGTATTCGTTTCCTCAAATACGGCTA 1525
Query 1317 CCGTCGAAAGCAATCCAAGCAGCAAAACAAGCCGGAAAAGTCCCTGACGTTTTCTACTGC 1376
|| || ||| |||||||| |||||||||||||||||||| || ||||||||||||||
Sbjct 1526 CCACCGGGAGCTATCCAAGCTGCAAAACAAGCCGGAAAAGTGCCAGACGTTTTCTACTGT 1585
Query 1377 CTTAAGCTCTTAGAAGCCACAGGAATCTCCACAGTTCCAGGCTCTGGATTTGGACAAAAA 1436
|| |||||||||||||||||||||||||||||||| || |||||||| |||||||| |||
Sbjct 1586 CTCAAGCTCTTAGAAGCCACAGGAATCTCCACAGTACCTGGCTCTGGGTTTGGACAGAAA 1645
Query 1437 GAAGGGGTGTTTCATTTAAGGACAACAATTCTGCCAGCAGAAGAAGAAATGCCAGAGATT 1496
||||| ||||| ||| | |||||||| || ||||||||||||||||| ||||| || ||
Sbjct 1646 GAAGGTGTGTTCCATCTGAGGACAACGATCCTGCCAGCAGAAGAAGAGATGCCGGAAATC 1705
Query 1497 ATGGACAGTTTCAAAAAGTTCAATGATGAGTTTATGTCTCAGTACGCTGATAACTTTGGT 1556
||||| |||||||| |||||||| || ||||| ||| ||||||| | | ||||| |||||
Sbjct 1706 ATGGATAGTTTCAAGAAGTTCAACGACGAGTTCATGACTCAGTATGATAATAACGTTGGT 1765
Query 1557 TACTCCAGAATGTGA 1571
|| || |||||||||
Sbjct 1766 TATTCGAGAATGTGA 1780
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67381643405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5