BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70581.1
Length=730
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908653 jgi|Araly1|908653|Al_scaffold_0002_1734 315 4e-85
> Ahg908653 jgi|Araly1|908653|Al_scaffold_0002_1734
Length=276
Score = 315 bits (170), Expect = 4e-85
Identities = 242/276 (88%), Gaps = 7/276 (3%)
Strand=Plus/Plus
Query 342 ATGGATTTTCCTGAAAAGTCGCTTAAAGTGAGGATCCCGGTGAAAGCTCCGGTGAGTTCT 401
||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGATTTTCCGGAAAAGTCGCTTAAAGTGACGATCCCGGTGAAAGCTCCGGTGAGTTCA 60
Query 402 AAGCCagagaaagaagaacaa-ca--ag-aaaagaaagaggaagaagaagaTAGATTCAC 457
|||||||||||||||||| || | || |||||||| | | |||||| || |||||||
Sbjct 61 AAGCCAGAGAAAGAAGAAAAAGAATTAGAAAAAGAAA-AAGCGGAAGAAAATGGATTCAC 119
Query 458 AACTCCAAAGGGGGAGGAATTTAGAATTCCGCCGCTATTTGAGTGTCCTCTGGCACCGGA 517
|||||||||||||||||||||||| |||||||||| | |||||||||||| ||||||||
Sbjct 120 AACTCCAAAGGGGGAGGAATTTAGGATTCCGCCGCAACTTGAGTGTCCTCCGGCACCGGG 179
Query 518 GCCACGCATCTTCAAGaaaaaaaTCGAAAAACGTCGCCAAAAAGCCGTC-GGGCAAAGGA 576
||||||||||| | |||||| ||||| |||| ||| ||||||| || ||||||||||
Sbjct 180 GCCACGCATCTACCGGAAAAAGATCGACAAACACCGCAAAAAAGCT-TCCGGGCAAAGGA 238
Query 577 ATATATCCTTTAACGTTCAAGATTTAGATACTTTCT 612
||| |||||||||||||||||||| ||||||||||
Sbjct 239 TTATCTCCTTTAACGTTCAAGATTTGGATACTTTCT 274
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26876656485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5