BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70590.1
Length=1367
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476189 jgi|Araly1|476189|fgenesh2_kg.2__1319__AT1G70590.1 1659 0.0
Ahg905601 jgi|Araly1|905601|Al_scaffold_0003_2729 167 2e-40
> Ahg476189 jgi|Araly1|476189|fgenesh2_kg.2__1319__AT1G70590.1
Length=1212
Score = 1659 bits (898), Expect = 0.0
Identities = 1137/1246 (91%), Gaps = 41/1246 (3%)
Strand=Plus/Plus
Query 11 aaaaaaaaaaaaaaaGCGAATCGTTTACTTACCCCTCTTTGAAACCGACGGTGGTATTTT 70
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||
Sbjct 1 AAAAAAAAAAAAAAAGCGAATCATTTACTTACCTCTCTTTGAAACCGACGGTGGTCTTTT 60
Query 71 TCGCCGGAGAAGATGAAGCAGAGAACCTGGCCTTGTAGATCTGAAGGATCTCGATTCTCC 130
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 61 TCGCCGGAGAAGATGAAGCAGAGAACGTGGCCTTGTAGATCTGAAGGATCTCGATTCACC 120
Query 131 TCCTTATCGTTTTTGAAACCTCACGACAAGGATAAACGGAGTAGAATTTCATCAATCAAC 190
||||||||||||||||||||||| || ||||| ||||| ||||||||||| |||||||||
Sbjct 121 TCCTTATCGTTTTTGAAACCTCAAGAAAAGGAAAAACGCAGTAGAATTTCTTCAATCAAC 180
Query 191 AAAGCAACGGCGAAGTCAACCACAAGTTCAAGGtcttcttcttcctcttcttcttcACGT 250
| ||||||||||||||||| ||||| |||||||||||||| | ||||| || || | |
Sbjct 181 AGAGCAACGGCGAAGTCAAGTACAAGCTCAAGGTCTTCTTC-T--TCTTCATC-TC-C-T 234
Query 251 CCTCCATCGAATGAGTTC---GGAGATTTCTCGATGCTTCCGTATGATATACTGATGAAG 307
|| |||||||||| || |||||||||||||||||||||| ||||||||||||||||
Sbjct 235 -CT--ATCGAATGAGGTCAGTGGAGATTTCTCGATGCTTCCGTTTGATATACTGATGAAG 291
Query 308 ATTGCTGCACCGTTTAGTCATCCGAATCTTCAAGCGGCGTCTTTGGTATGTAAATCGTGG 367
|| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 292 ATCGCTGCACCGTTTAGTCATCCGAATCTTCAAGCGGCGTCGTCGGTATGTAAATCGTGG 351
Query 368 AGAGACGCGCTAAAGCCGTTGCGAGAGTCGATGTTGTTGATTCGGTGGGGGAAAAAGTAC 427
||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||| |
Sbjct 352 AGAGACGCGCTAAAGCCGTTGAGAGAGTCGATGTTGTTGCTTCGTTGGGGGAAAAAGTTC 411
Query 428 AAGCACGGAAGAGGAGGTGTGCGAGCGAATCTCGACAAAGCTCTTGATTCGTTTCTGAAA 487
|| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 412 AAACACGGAAGAGGAGGTGTGCGAGCGAATCTCGATAAGGCTCTTGATTCGTTTCTGAAA 471
Query 488 GGAGCTATGCGTGGATCCACGCTCGCTATGGTCGACGCTGGGCTTGTGTATTGGGAAA-G 546
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 472 GGAGCTGCGCGTGGATCCACGCTCGCTATGGTCGACGCTGGGCTTGTGTATTGGGAAACG 531
Query 547 AGGAGAGAAGGAGAAAGCGGTGAATTTGTATCGGAGAGCTTCGGAGCTTGGTGATGCTGT 606
|||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||
Sbjct 532 -GGAGAGAAGGAGAAAGCGGTGAGTTTGTATCGGAGAGCTGCAGAGCTTGGTGATGCTGT 590
Query 607 TGGTCAATGTAATTTAGGGA-TTGCTTATCTTCAAGTTCAACCTTCAAATCCCAAGGAAG 665
|||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||| |
Sbjct 591 TGGTCAATGTAATTTAGGGATTTG-TTATCTTCAAGTTCAACCTTCAAATCCGAAGGAGG 649
Query 666 CGATGAAATGGTTGAAACAATCTGCAGAGAATGGTTATGTTCGAGCACAGTATCAGTTAG 725
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 650 CGATGAAATGGTTGCAACAATCTGCAGAGAATGGTTACGTTCGAGCACAGTATCAGTTAG 709
Query 726 CTCTTTGTTTACACCATGGTCGGGTCGTGCAAACCAATCTGCTTGAAGCTACTAAATGGT 785
||||||||||||| || || ||||||||| ||||||||||||| ||||||| ||||||||
Sbjct 710 CTCTTTGTTTACATCAAGGCCGGGTCGTGAAAACCAATCTGCTAGAAGCTAGTAAATGGT 769
Query 786 ACCTAAAGGCAGCAGAAGGTGGGTATGTACGAGCGATGTATAACATTTCGCTTTGTTATT 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 ACCTAAAGGCAGCAGAAGGTGGGTATGTACGAGCGATGTATAACATTTCGCTTTGTTATT 829
Query 846 CGGTTGGAGAAGGCTTACCACAAAACCGCAAGCTAGCAAGAAAATGGATGAAACGAGCAG 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 CGGTTGGAGAAGGCTTACCACAAAACCGCAAGCTAGCAAGAAAATGGATGAAACGAGCAG 889
Query 906 CTGATCACGGCCACAGTAAAGCTCAGTTTGAACACGGCCTTGCTCTATTTTCTGAAGGGG 965
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 CTGATCACGGCCACTCTAAAGCTCAGTTTGAACACGGCCTTGCTCTATTTTCTGAAGGGG 949
Query 966 AGATGCTGAAGTCAGTGCTTTACTTAGAACTTGCCGAACGTGGTGGCGAAGCAGCTGCTA 1025
||||||||| || || |||||||||||||| || ||||||||||||||| |||||||||
Sbjct 950 CGATGCTGAAATCTGTACTTTACTTAGAACTCGCTGAACGTGGTGGCGAATCAGCTGCTA 1009
Query 1026 CTCCCGTCAAAGAAGTTGTACACCAACAGCTTTCTGCAACTTTTGGTGGTCAGGCCGTAC 1085
||| | |||| |||||| |||||||||||||||||||||||| | ||||||| | | |
Sbjct 1010 CTCACATCAAGGAAGTTATACACCAACAGCTTTCTGCAACTTCTCGTGGTCATG---T-C 1065
Query 1086 ACCATGCCATACACCAAGCCAATAACTGGCGTCCTCTACCAGTTACTCGATGACTCCTAT 1145
| | | |||||||||||||||||| |||||||||||| |||||| |||||||| |
Sbjct 1066 A---T---A--CACCAAGCCAATAACTGGTGTCCTCTACCAGCTACTCGCTGACTCCT-T 1116
Query 1146 CATTTATTTCAGTGAGGTCTA-GTGATTGGCTAGTTACATGTCCATAACTTAAATTCCAA 1204
| |||||||||| | |||||||||| ||||||||||||||||||| |||||||
Sbjct 1117 -A-------CAGTGAGGTCAAAGTGATTGGCTCGTTACATGTCCATAACTTATATTCCAA 1168
Query 1205 TTTGACAATGTAT-CAATGACAAAACCTTATTTCAGATTTCTACTT 1249
|||| | |||| | ||||||||| |||||||||||||||| ||||
Sbjct 1169 TTTGGCCATGTTTTCAATGACAA--CCTTATTTCAGATTTCGACTT 1212
> Ahg905601 jgi|Araly1|905601|Al_scaffold_0003_2729
Length=306
Score = 167 bits (90), Expect = 2e-40
Identities = 153/181 (85%), Gaps = 14/181 (8%)
Strand=Plus/Plus
Query 959 GAAGGGG-AGATGCTGAAGTCAGTGCTTTACTTAGAACTTGCCGAACGTGGTGGCGAAGC 1017
||||||| | |||||||| ||||| |||||||||||||| || ||||||||||||||||
Sbjct 139 GAAGGGGCA-ATGCTGAAATCAGTACTTTACTTAGAACTCGCTGAACGTGGTGGCGAAGT 197
Query 1018 AGCTGCTACTCCCGTCAAAGAAGTTGTACACCAACAGCTTTCTGCAACTTTTGGTGGTCA 1077
||||||| ||| |||||| |||||| |||||||||||||||||||||| || | ||
Sbjct 198 AGCTGCTGCTCACGTCAAGGAAGTTATACACCAACAGCTTTCTGCAAC--TT-CTCGT-- 252
Query 1078 GGCCGTACACCATGCCATACACCAAGCCAATAACTGGCGTCCTCTACCAGTTACTCGATG 1137
| || |||| ||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 253 -G--GT----CATGTCATACACCAAGCCAATAACTGGCGTCCTCTACCAGCTACTCGCTG 305
Query 1138 A 1138
|
Sbjct 306 A 306
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51160954614
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5