BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70600.1
Length=737
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476190 jgi|Araly1|476190|fgenesh2_kg.2__1320__AT1G70600.1 828 0.0
Ahg472587 jgi|Araly1|472587|fgenesh2_kg.1__2541__AT1G23290.1 599 1e-170
> Ahg476190 jgi|Araly1|476190|fgenesh2_kg.2__1320__AT1G70600.1
Length=555
Score = 828 bits (448), Expect = 0.0
Identities = 518/549 (94%), Gaps = 16/549 (3%)
Strand=Plus/Plus
Query 25 GGAGGAGAGTGTAGCAGATCGGCGAAAATGACAACCAGATTCAAGAAGAACAGGAAGAAG 84
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGAGAAGAGTGTAGCAGATCGGCGAAAATGACAACCAGATTCAAGAAGAACAGGAAGAAG 60
Query 85 AGAGGTCACGTCAGCGCCGGACATGGGCGTATCGGTAAGCACCGTAAGCATCCCGGAGGT 144
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 61 AGAGGTCACGTCAGCGCCGGACATGGTCGTATCGGAAAGCACCGTAAGCATCCCGGAGGT 120
Query 145 CGTGGTAACGCTGGAGGTATGCATCACCACAGGATCCTCTTCGACAAGTACCATCCAGGT 204
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGTGGTAACGCCGGAGGTATGCATCACCACAGGATCCTCTTCGACAAGTACCATCCAGGT 180
Query 205 TACTTCGGTAAAGTTGGTATGAGGTATTTCCACAAGCTGAGGAACAAGTTCTTCTGCCCA 264
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TACTTTGGTAAAGTTGGTATGAGGTATTTCCACAAGCTGAGGAACAAGTTCTTCTGCCCA 240
Query 265 ATCGTTAACCTCGACAAGCTTTGGTCACTCGTCCCTGAAGATGTGAAGGCGAAATCAACC 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATCGTTAACCTCGACAAGCTTTGGTCACTCGTCCCTGAAGATGTGAAGGCGAAATCAACC 300
Query 325 AAGGACAATGTTCCGTTGATCGATGTGACTCAACATGGTTTCTTCAAGGTTTTGGGTAAA 384
||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 301 AAGGATAATGTTCCTTTGATCGATGTGACGCAACATGGTTTCTTCAAGGTTTTGGGGAAA 360
Query 385 GGTCATTTGCCTGAGAACAAGCCGTTCGTTGTGAAGGCGAAGCTTATTTCGAAGACTGCT 444
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 GGTCATTTGCCTGAGAACAAGCCGTTCGTTGTGAAGGCGAAGCTTATCTCGAAGACTGCT 420
Query 445 GAGAAGAAGATTAAGGAAGCTGGTGGTGCTGTTGTGCTTACTGCTTAAGTTAGGTGAATT 504
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 421 GAGAAGAAGATTAAGGAAGCTGGTGGTGCTGTTGTGCTCACTGCCTAAGTTAGGTGAATT 480
Query 505 TATTTGCTTAACTCTGTTTTTGAATCTTCTATGGAGTTTTATCATCTTTT-GTTGTCTTT 563
| | | | | | ||||||||| ||||||||| | ||||||| |||||||||
Sbjct 481 T-T------A--T-T-T----GAATCTTCTCTGGAGTTTTGTTATCTTTTTGTTGTCTTT 525
Query 564 TGGATTTTG 572
|||||||||
Sbjct 526 TGGATTTTG 534
> Ahg472587 jgi|Araly1|472587|fgenesh2_kg.1__2541__AT1G23290.1
Length=551
Score = 599 bits (324), Expect = 1e-170
Identities = 394/429 (92%), Gaps = 0/429 (0%)
Strand=Plus/Plus
Query 67 AAGAAGAACAGGAAGAAGAGAGGTCACGTCAGCGCCGGACATGGGCGTATCGGTAAGCAC 126
||||||||||| ||||||||||| |||||||||||||| ||||| |||||||| || ||
Sbjct 17 AAGAAGAACAGAAAGAAGAGAGGACACGTCAGCGCCGGTCATGGACGTATCGGAAAACAT 76
Query 127 CGTAAGCATCCCGGAGGTCGTGGTAACGCTGGAGGTATGCATCACCACAGGATCCTCTTC 186
|| |||||||||||||||||||||||||| |||||||||||||||||| | |||||||||
Sbjct 77 CGCAAGCATCCCGGAGGTCGTGGTAACGCAGGAGGTATGCATCACCACCGTATCCTCTTC 136
Query 187 GACAAGTACCATCCAGGTTACTTCGGTAAAGTTGGTATGAGGTATTTCCACAAGCTGAGG 246
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 137 GACAAGTACCATCCAGGTTACTTCGGCAAAGTTGGTATGAGGTATTTCCACAAGCTTCGT 196
Query 247 AACAAGTTCTTCTGCCCAATCGTTAACCTCGACAAGCTTTGGTCACTCGTCCCTGAAGAT 306
||||||||||| ||||||||||| |||||||||||||| |||||||| || ||||||||
Sbjct 197 AACAAGTTCTTTTGCCCAATCGTGAACCTCGACAAGCTCTGGTCACTTGTTCCTGAAGAC 256
Query 307 GTGAAGGCGAAATCAACCAAGGACAATGTTCCGTTGATCGATGTGACTCAACATGGTTTC 366
|||||||||||||| | |||||| ||||||||||||||||||||||| || |||||||||
Sbjct 257 GTGAAGGCGAAATCGAGCAAGGATAATGTTCCGTTGATCGATGTGACGCAGCATGGTTTC 316
Query 367 TTCAAGGTTTTGGGTAAAGGTCATTTGCCTGAGAACAAGCCGTTCGTTGTGAAGGCGAAG 426
|||||||||||||| ||||||||||||||||||||||| || |||||||||||||| |||
Sbjct 317 TTCAAGGTTTTGGGGAAAGGTCATTTGCCTGAGAACAAACCTTTCGTTGTGAAGGCTAAG 376
Query 427 CTTATTTCGAAGACTGCTGAGAAGAAGATTAAGGAAGCTGGTGGTGCTGTTGTGCTTACT 486
||||| || |||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 377 CTTATCTCTAAGACTGCTGAGAAGAAGATTAAGGAAGCTGGTGGTGCTGTTGTTCTCACT 436
Query 487 GCTTAAGTT 495
||||| |||
Sbjct 437 GCTTAGGTT 445
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27143516904
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5