BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70620.3
Length=3249
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476192 jgi|Araly1|476192|fgenesh2_kg.2__1322__AT1G70620.2 2675 0.0
> Ahg476192 jgi|Araly1|476192|fgenesh2_kg.2__1322__AT1G70620.2
Length=3398
Score = 2675 bits (1448), Expect = 0.0
Identities = 1735/1869 (93%), Gaps = 38/1869 (2%)
Strand=Plus/Plus
Query 845 GAAGAGTCTGGAAATACAACACAACATGAGGTGCATATATCATTGCCTGATGGTGGGGGA 904
|||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 799 GAAGAGTCTGAAAATGCAACACAACATGAGGTGCAGATATCATTGCCTGATGGTGGGGGA 858
Query 905 CCTGTTCACACGGAGCAGCATATGCAATATGCATATGGAGATCAATCAGCTGCTCCACCT 964
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 859 CCTGTTCGCACGGAGCAGCATATGCAATATGCATATGGAGATCAATCAGCGGCTCCACCT 918
Query 965 AGTAACTTTAGTGATCACAATGCATGGCAGCCCCATACCACAAGTGGAGTAGTCTATCCT 1024
|||||| |||||||| | | || | ||||||| |||| || ||||||||||||
Sbjct 919 AGTAACCTTAGTGAT--C-A-GC----C-TTCCCATACTACAACCGGGGTAGTCTATCCT 969
Query 1025 CCAATTCCTTCATCGGCGCAATCAATACCTCAGCATGACTCATCTATGGCCATACCTCCT 1084
||||| |||||||||| ||| |||||||||||| |||||||||||||||| |||||||||
Sbjct 970 CCAATCCCTTCATCGGTGCAGTCAATACCTCAGAATGACTCATCTATGGCTATACCTCCT 1029
Query 1085 GTTTCGGGTCATATCATGCCCCCATATGGAAGGTTTCCCCCACCAAATC-CCCAGCCTGT 1143
|||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||
Sbjct 1030 GTTTCGGGTCATATCATGCCTCCATATGGAAGGTTTCCCCCACCAAA-CATCCAGCCTGT 1088
Query 1144 TGGACCCCCATATGCTTTTGGGACAAAGCCCCCTCTTCACCCTGTTGCAGCATTCATGGA 1203
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1089 TGGACCCCCATATGCTTTTGCGACAAAGCCGCCTCTTCACCCTGTTGCAGCATTCATGGA 1148
Query 1204 TGACTCATATGCAGCATCGTCTGTTCCTCCTAAAAAGGCTCCTGTACCTAACTGGCTCAA 1263
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1149 TGACTCATATGCAGCATCGTCTGTTCCTCCGAAAAAGGCTCCTGTACCTAACTGGCTCAA 1208
Query 1264 GGAAGAATTATTGAAGAAAAAAGCAGATCTTGGAAGGCCTTCTTCAGGGAGATTTGAGGA 1323
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1209 GGAAGAATTATTGAAGAAAAAAGCAGATCTTGGAAGGCCTTCTTCAGGGAGTTTTGAGGG 1268
Query 1324 GAGAGAATCTATGGATGATGATGTACTTTATAAACCTCCTACGAAAGCTGATCAGCCTGA 1383
|||||||||||||||||||||||||||||||||| ||||| | ||||||||||| | ||
Sbjct 1269 GAGAGAATCTATGGATGATGATGTACTTTATAAAACTCCTGCCAAAGCTGATCAACGTGG 1328
Query 1384 CaaaaaaaGCTTCAGCCCCTCTAATTCCTCT----GAC--GAAGAAGA--A-GAGGATGA 1434
| ||||||||||||||||||| || |||||| ||| |||||||| | ||||||||
Sbjct 1329 CGAAAAAAGCTTCAGCCCCTCCAAATCCTCTGACGGACAAGAAGAAGAGGATGAGGATGA 1388
Query 1435 GATGGATGCAGCTAGAACCACAGAAATTAATATGGAGATAAAGCGTATCTTGACAGAAGT 1494
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 1389 GATGGATGCAGCTAGAACCGCAGAAATTAATATGGAGATAAAGCGTATCTTGACTGAAGT 1448
Query 1495 CCTTCTTAAGGTTACAGATGAATTATTTGATGAAATTGCAACCAAAGTCATTAACGAAGA 1554
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1449 CCTTCTTAAGGTTACAGATGAATTATTTGATGAAATTGCAACCAAAGTCATTAATGAAGA 1508
Query 1555 TGAAGCAATACCTAAAGATGATAGTGTACAGCATAATCATAAATTGTCATCATCCCTTCT 1614
||||||||||||||||||||| ||||||||||| |||||||| | ||||||||| |||||
Sbjct 1509 TGAAGCAATACCTAAAGATGACAGTGTACAGCACAATCATAAGTCGTCATCATCTCTTCT 1568
Query 1615 CTCCACAGCTGATCCACTCCACAAGGCTTCGGCAAAGATTTTGGTCTCGGTAGAAGGTGC 1674
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1569 CTCCACAGCTGATCCACTCCACAAGGCTTCGGCAAAGATTTTGGTCTCAGTAGAAGGCGC 1628
Query 1675 AAATACAAAAGCTAGTTCTGGCTCTCCAGCAGATGTGCTAGGTCTTGCTAGCTATGCCTc 1734
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 AAATAAAAAATCTAGTTCTGGCTCTCCAGCAGATGTGCTAGGTCTTGCTAGCTATGCCTC 1688
Query 1735 tgatgatgatgatgctgatactgatgctgcttctgacgcgaatgctgatgaAAATG--G- 1791
|||||||||||||||||||||||||||||||||| | ||| || |||||||||||| |
Sbjct 1689 TGATGATGATGATGCTGATACTGATGCTGCTTCTAATGCGGATACTGATGAAAATGATGG 1748
Query 1792 AGTGGAGAGTCTTGGTGTGGGGTCAAGACACAATGTTAGTCAGCAGCCAAGCACTGAGAA 1851
||| ||||||||| | |||||| |||||||| || ||||||||| |||||||| ||||||
Sbjct 1749 AGTTGAGAGTCTTAGCGTGGGGACAAGACACGATCTTAGTCAGCGGCCAAGCAATGAGAA 1808
Query 1852 ACTTCCTGACCCTGAAGCAATGGCCAGTGCGAAATTGGATCCAGCAGTTGGA-GTCAATG 1910
||||||||| |||||||||||||||| ||| |||||||||||| ||||| | |||||||
Sbjct 1809 ACTTCCTGAACCTGAAGCAATGGCCAATGCAAAATTGGATCCAAAAGTTG-ATGTCAATG 1867
Query 1911 CTAATTCTGGCAAGAATAGTAAGTCAGGCTTGGAGGATTATTCTCAGATGCCAGGCTCCA 1970
||| ||| |||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1868 CTAGTTCCGGCAAGAATAGTAATTCCGGCTTGGAGGATTATTCTCAGATGCCAGGCTCCA 1927
Query 1971 CGA-GAAAAGATGATGAGGCGGGTAGTACCAAAATATCTGATGTAAGCGCCAGCTCTGGA 2029
|| |||||||||||||||| ||||||||||||||||| ||||||||||| | |||||||
Sbjct 1928 -GAAGAAAAGATGATGAGGCAGGTAGTACCAAAATATCAGATGTAAGCGCGAACTCTGGA 1986
Query 2030 CTTGATGATGATACTTCAGGAAGCAGAAAAGAGCATCCTGACAGAACTGATAGTGATAAA 2089
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1987 CTTGATGCTGATACTTCAGGAAGCAGAAAAGAGCATCCTGACAGAACTGATAGTGATAAA 2046
Query 2090 GATGCCA-TACTAGATGAACCTCACGTGAAGAATTCTGGCGTGAAATCAGATTGCAACCT 2148
||||| | |||||||||||||||||| ||||||||||||| |||||||||||||| ||||
Sbjct 2047 GATGC-AGTACTAGATGAACCTCACGGGAAGAATTCTGGCTTGAAATCAGATTGCCACCT 2105
Query 2149 TCGTCAGGATAGTAATAAACCTTATGGGAAAGATTTGAGTGACGAAGTGAGTACAGATAG 2208
||||||||||||||||||| ||||||||||||| |||||||| ||||||||||| |||||
Sbjct 2106 TCGTCAGGATAGTAATAAAACTTATGGGAAAGACTTGAGTGATGAAGTGAGTACGGATAG 2165
Query 2209 AAGTAGAATAGTTGAAACGAAAGGTGGGAAAGAGAAAGGAGATTCTCAGAATGACTCAAA 2268
|||||||| || |||||||||||||| |||||||||| |||||||||||||| ||||||
Sbjct 2166 AAGTAGAACAGAAGAAACGAAAGGTGGAAAAGAGAAAGTAGATTCTCAGAATGGCTCAAA 2225
Query 2269 AGATAGAATGAAGGAAAATGACTTAAAGTCAGCAGAGAAAGTTAAAGGCGTTGAATCAAA 2328
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2226 AGATAGAATGAAGGAGAATGACTTAAAGTCAGCAGAGAAAGTTAAAGGCGTTGAGTCAAA 2285
Query 2329 TAAAAAATCTACTGATCCCCATGTAAAGAAAGACTCAAGGGATGTAGAGAGGCCTCACAG 2388
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2286 TAAAAAATCTACTGATCCCCATGTAAAGAAAGACTCGAGGGATGTAGAGAGGCCTCACAG 2345
Query 2389 AACTAATTCTAAGGAAGACCGGGGTaaaagaaaag-agaaggaaaaggaagaagaaagGT 2447
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 2346 AACTAATTCTAAGGAAGACCGGGGTAAAA-AAAAGGAGAAGGAAAAGGAAGAAGAAAGGT 2404
Query 2448 CAAGACACAGGCGGGCTGAAAACTCGAGCAAGGACAAAAGAAGACGTTCTCCAACCAGTA 2507
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2405 CAAGACACAGGCGGGCTGAAAACTCGAGCAAGGACAAGAGAAGACGTTCTCCAACCAGTA 2464
Query 2508 ATGAATCTTCTGATGATTCGAAGAGGAAGTCCCGTTCTAGAAGAAGGAGTGTATCACCAT 2567
||||||||||||| ||||| ||||| |||||||||||||||||||||| |||||||||||
Sbjct 2465 ATGAATCTTCTGACGATTCAAAGAGAAAGTCCCGTTCTAGAAGAAGGAATGTATCACCAT 2524
Query 2568 CTCCTGTGAGGTCCAGAAGAAAACGCTCTTCTCCATCCAGTGATGAA-TCCTCTGATGAT 2626
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 2525 CTCCTGTGAGGTCCAGAAGAAAACGCTCTTCTCCATCCAGTGATGAACTC-TCTGATGAT 2583
Query 2627 TCAAAAAGGAAGTCATC-T-T-CAAAAAGAAAGAA-TCGGTCACCATCACCCGGAAAGTC 2682
||||||||||||||||| | | | ||||||| ||| |||||||||||| || |||| |||
Sbjct 2584 TCAAAAAGGAAGTCATCATCTTCGAAAAGAA-GAAATCGGTCACCATCTCCGGGAAGGTC 2642
Query 2683 CAGAAGAAG 2691
|||||||||
Sbjct 2643 CAGAAGAAG 2651
Score = 1120 bits (606), Expect = 0.0
Identities = 698/741 (94%), Gaps = 12/741 (2%)
Strand=Plus/Plus
Query 80 ATGGACGCGTACCAGCCACCACCTCAATACCTGAGACCGCCGTCTGGACCACCGCCTCCG 139
||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGACGCGTATCAGCCACCGCCTCAGTACCTGAGACCGCCGTCTGGACCACCGCCTCCG 60
Query 140 ACGGATCCTTACCACCAATACTATCAGCATCAGGCGAGACCACCGGTGCCTCCTCCTACG 199
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 GCGGATCCTTACCACCAATACTATCATCATCAGGCGAGACCACCGGTGCCTCCTCCTACG 120
Query 200 CAGCCCGGTGGTCCTCCTGCATGGTACTCCAACCAATTTCATCACCCTCACTCTCCATCG 259
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 121 CAGCCCGGTGGTCCTCCTACATGGTACTCCAACCAATTTCATAACCCTCACTCTCCATCG 180
Query 260 CCACCGCCTCCACCTCCGCCGCAGTGGGGGCCACCTTCACCGCATTATCCTCAAGGCCAA 319
||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 181 CCACCACCTCCACCTCCGCCGCAGTGGGGACCACCTTCGCCGCATTATCCTCAAGGCCAA 240
Query 320 CCTTACTCTTCTCCCGCTTATCCTCCTCACCAGCCGCCATTCAACGCCGGCGCTAACGGT 379
|||||||||||| ||| ||||||||||||||||||||| |||| ||||| |||||| |||
Sbjct 241 CCTTACTCTTCTTCCGGTTATCCTCCTCACCAGCCGCCCTTCAGCGCCGTCGCTAATGGT 300
Query 380 AACAGTCAGTTTCCTCCTCCATCTACCGGTGCGCCGATTCCTCCGCCATATCCTCAGGCT 439
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 301 AACAGTCAGTTTCCTCCTCCATCTACCGGTGCGCCGATTCCTGCGCCATATCCTCAGGCT 360
Query 440 AATCAGGAATGGGGCAATCCAAATTGGGGGTATCAACAACAACAAGGTCACACCCCTCAA 499
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 361 AATCAGGAATGGGGCAATCCAAGTTGGGGGTATCAACAACAACAAGGTCACACTCCTCAA 420
Query 500 GCTAATAGCAACGTCGAGGACTGGGCTGTGAAAGCCAAAGAATGGGCAGCTGCGAACAAG 559
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 421 GCTAATAGCAACGTCGAGGACTGGGCAGTGAAAGCCAAAGAATGGGCAGCTGCGAACAAG 480
Query 560 GATCAGCAATCACAGCAGTCTGCACCGAACCAACCTAGCGGACAAGTCTACCAGCAGCAG 619
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 481 GATCAGCAATCACAG---TCTGCACCGAACCAACCTAGTGGACAAGTCTACCAGCAGCAG 537
Query 620 TATCCTACTCATGGCTATCAAGATTTTCATCAACAGGCAG---TTCCAGGAGTAAGCTAT 676
|| ||||||||||||||||||||| ||||||||||||| | |||||||||| ||||||
Sbjct 538 TACCCTACTCATGGCTATCAAGATGTTCATCAACAGGCGGCGGTTCCAGGAGTCAGCTAT 597
Query 677 CAGCAGCATCAGCAGTTTCCAGTTCCACCCACAACACAGCCCGAGAGATATCCAAATTAC 736
|||||||| | |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 598 CAGCAGCA---G---TTTCCAGTTCCACCCACAACACAGCCGGAGAGATATCCAAATTAT 651
Query 737 GCAACAGGAAACGAGAGCTTTCCTGGAGTTGGATTGCCCCAAGAAAACCTGCCTACCAGT 796
||||||||| ||||||| |||||||||| ||||||||||||||||||||||||| |||||
Sbjct 652 GCAACAGGACACGAGAGTTTTCCTGGAGGTGGATTGCCCCAAGAAAACCTGCCTTCCAGT 711
Query 797 TCTGCAATTCATCAGCAGGAG 817
|||||||||||||||||||||
Sbjct 712 TCTGCAATTCATCAGCAGGAG 732
Score = 479 bits (259), Expect = 6e-134
Identities = 343/381 (90%), Gaps = 16/381 (4%)
Strand=Plus/Plus
Query 2874 CAGGTCGAAGCGGTCAAGGTCCAGATCAAGATCCCCCCACAGGCGCCATC--G-TAAATG 2930
|||||| ||||||||||| ||||||||||||||||||||||||||||||| | ||||||
Sbjct 3019 CAGGTCAAAGCGGTCAAGATCCAGATCAAGATCCCCCCACAGGCGCCATCGTGCTAAATG 3078
Query 2931 AACACTCTAGCAAACTGGTCTGAGACTGTACCCGGGACAATATTGTGCGCGGTGGATCAC 2990
||||||||||||||||||| | |||||||| ||||||||| |||| ||||||||||||
Sbjct 3079 AACACTCTAGCAAACTGGTGTAAGACTGTATGCGGGACAATGTTGTACGCGGTGGATCAA 3138
Query 2991 AGGATTGGGTTAATGTACTGGACGGACATCGATATAATCAAAAACTATAAAGTCACCGGT 3050
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 3139 AGGATTGGGTTAATGTACTGGACGGACATCGATATAACCAAAAACTATAAAGTCACCGGT 3198
Query 3051 TTGTGAGCGAAATAGTGCATAGTAAACCGCTCTTTCCTTAGTTCTTCAGAAGA-AATATC 3109
|||||||||||||||||||| || |||||||||||||||||||||| |||||| || |||
Sbjct 3199 TTGTGAGCGAAATAGTGCATTGTGAACCGCTCTTTCCTTAGTTCTTGAGAAGAGAA-ATC 3257
Query 3110 CAAAGATTTTTGACTGA--CTTGTTTGACAATATCGTTGGTTGGTTAAGCGTTCCTATGT 3167
||||||||||||||||| || ||||||| |||| |||||||||||||||||||||||||
Sbjct 3258 CAAAGATTTTTGACTGAGACTAGTTTGACGATATTGTTGGTTGGTTAAGCGTTCCTATGT 3317
Query 3168 AAAATTTTGTTCC--CTCTGAAACATTGCATTATCTAAATCTATGTCTT-TA--C--A-- 3218
|||| ||||||| |||||||||||||||||| | |||||| |||||| | | |
Sbjct 3318 AAAAATTTGTTCTTTCTCTGAAACATTGCATTACCAAAATCTGTGTCTTATGTTCTTACC 3377
Query 3219 TTCCACATTCTAATGAAATCG 3239
|||||||||||||||||||||
Sbjct 3378 TTCCACATTCTAATGAAATCG 3398
Score = 292 bits (158), Expect = 8e-78
Identities = 182/193 (94%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 2689 AAGAACTATTGAAAGCAAAAAGTTTGACAAAAAGAC---AATGGGTAAGCCAAGCGGAGT 2745
||||||| ||| |||||||| ||||||| ||||||| |||||||||||||||||||||
Sbjct 2743 AAGAACTTTTGGAAGCAAAAGGTTTGAC-AAAAGACAATAATGGGTAAGCCAAGCGGAGT 2801
Query 2746 AGCTAGTAAGAAAACTCACCACAAAAAGTATCATATATGTTTTGATTGTATAGACATGTT 2805
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2802 AGCTAGTATGAAAACTCACCACAAAACGTATCATATATGTTTTGATTGTATAGACATGTT 2861
Query 2806 TCTTCGCGGTCACCACATAGCAAGCATTCTCAGCACAAGAACACTCTCTACTCTTCTCAT 2865
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2862 TCTTCGCGGTCACCACATAGCAAGCATTCTCAGCACAAGCACACTCTCTACTCTTCTCAT 2921
Query 2866 GACAAATCCAGGT 2878
|| ||||||||||
Sbjct 2922 GAAAAATCCAGGT 2934
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122621500206
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5