BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70630.1
Length=2243
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476193 jgi|Araly1|476193|fgenesh2_kg.2__1323__AT1G70630.1 3110 0.0
> Ahg476193 jgi|Araly1|476193|fgenesh2_kg.2__1323__AT1G70630.1
Length=2165
Score = 3110 bits (1684), Expect = 0.0
Identities = 2033/2193 (93%), Gaps = 57/2193 (3%)
Strand=Plus/Plus
Query 1 TCTGAAAACAATTTCTTGAAGATGACGAAAAGTGTTCACATGtcttcttcttcttcttct 60
|||| || |||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1 TCTGCAATCAATTTCTTGAAGATGACGAAAAGCGTTCACATG---------TCTTCTTCT 51
Query 61 tcttcttcttcACCATTCCTCCCGCCGGCTTTCCGCTTCATCACCATTTTGAAGTTTTGG 120
|||||||| | |||||||||||||||||| ||||| | | | ||||||||||||
Sbjct 52 TCTTCTTC--C-CCATTCCTCCCGCCGGCTATCCGC-T--T---C---TTGAAGTTTTGG 99
Query 121 GTCTTCGAGCTGGGCTCTTGTCTATTTGGCTATCTGGGTTTCTTCTAATCGCTCTCTCTT 180
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 100 GTCTTCGAGCTGGGCTGTTGTCTATTTGGCTATCTGGGTTTCTTCTAATTGCTCTCTCTT 159
Query 181 TCTACGGCACTCAGCTTCTATCTCCAACTTCACTCAATGACCCATTTAGATACTCTGGCG 240
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 160 TCTACGGCACTCAGCTTCTATCTCCAACTTCACTCAATGATCCATTCAGATACTCTGGCG 219
Query 241 ATTCCATTGCTACTGCTGCTCCAAGAATCACCATTTTCACTTCTCTCAATGTCTCCTCCT 300
||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 220 ATTCCATTGCTGCTGCTGCTCCAAGAATCACCATTTTCACTTCTTTCAATG--------- 270
Query 301 TGGAAGAAAATAGCCAAGCTTTACTTGCTCTTCGTTCATGGCTCGCTTTGTCTTCCCAAA 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 271 GGGAAGGAAATAGCCAAGCTTTACTTGCTCTTCGTTCATGGCTCGCTTTGTCTTCCCATA 330
Query 361 TCACTGTTGTTTTATTCACTcaacacaacaacaacaacaacaacaacaacaacaacCACT 420
|||| ||||||||||| | || |||| || | || |||| | || |
Sbjct 331 TCACAGTTGTTTTATT---T----------AC-TCAAC-AC-A-AA-AACAGC--CC-TT 369
Query 421 CTTCTGATTCTTCTTCATTCACCGACAAATTTGGTTCTCGTCTTCTTCTTGATTCCACCA 480
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 370 CTTCTGATTCTTCTTCATTCACCGACAAATTTGGTTCCCGTCTTCTTCTTGATTCCACCG 429
Query 481 TTGATTTCACGTTTCTTGGAACTCCATTTTTACATTCGATGATGTCGAGAATTGAAGCTT 540
||||||||||||||||||| ||||||||||||||||||||| || |||||| ||||||||
Sbjct 430 TTGATTTCACGTTTCTTGGCACTCCATTTTTACATTCGATGCTGGCGAGAAGTGAAGCTT 489
Query 541 ATCAATCAGATATAGCTGTTCTAATGGATCCAGAGACTGTTTTACTGCCAGATTTCATAT 600
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 490 ATCAATCAGATATAGCTGTTCTGATGGATCCAGAGACTGTTTTACTGCCAGATTTCATAT 549
Query 601 CTGCTTTGAGTTATGCTCACGAGCTTGGTCGTGATTGGCTTCTTGTTTCTTCATCAGT-G 659
|||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
Sbjct 550 CTGCTTTGAGTTATGCTCACCAGCTTGATCGTGATTGGCTTCTTGTTTCTTCATCAGTAG 609
Query 660 GAAATTCCCCGTTTCCCGTTCCATTGGGATGAAACTAGACATTTTTGGCGTCAGGACAAT 719
| ||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 610 G-AATTCCCCGTTTCCCGTTCCATTGGGACGAAACAAGGCATTTTTGGCGTCAGGACAAT 668
Query 720 GGGAAAAGAGTGAGATTTAGGGAGTTGCAGAAGATGATAAGCTTGCGGAGTTTGCAATCA 779
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 669 GGGAAAAGAGTGAGATTTGGGGAGTTGCAAAAGATGATAAGCTTGCGGAGTTTGCAATCA 728
Query 780 AATTCTAGCGCAA-GCAAAATGATTATGGCATGGAACAACATTGATATGCCCTTGCACTG 838
|||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 AATTCTAGTG-AAGGCAAAATGATTATGGCATGGAACAACATTGATATGCCCTTGCACTG 787
Query 839 TGGAGTGCTTCCACCTTTTTTGTATCAAAGAGGTACTCATAATCAATGGATCATTAACGA 898
|||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 788 TGGAGTACTTCCACCTTTTTTGTATCAAAGAGGAATTCATAATCAATGGATCATTAACGA 847
Query 899 AGCTATGTCATGTAAAAGAAGGTTTGTGTTTGATGCCACTTCAACCATATCGAGCTTTTT 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 848 AGCTATGTCATGTAAAAGAAGGTTTGTGTTTGATGCCACTTCAACCATATCGAGCTTGTT 907
Query 959 CCTAGGCAATGCAGAGAACATATACAATAGGAGTGATAATGTCTCAGAACCCAAAACGAG 1018
||||||||||| |||||||||| | ||||||||||||||||||||||||||||| || ||
Sbjct 908 CCTAGGCAATGGAGAGAACATAGATAATAGGAGTGATAATGTCTCAGAACCCAACACAAG 967
Query 1019 AAACTGGGAATATGTAGGAAACTCCCATCTTGGGCAGCTCTATGGTTCATTGTACTCTAG 1078
||||||||||||| | |||||||||| ||| ||||||||||| || ||||||| ||||||
Sbjct 968 AAACTGGGAATATATTGGAAACTCCCGTCTCGGGCAGCTCTACGGGTCATTGTTCTCTAG 1027
Query 1079 GTCTTATACGCTACCTAAGCTTTTGAAGTGCAAC-AGACGCTATATCTTTGTTAGCGCTT 1137
||||||||| ||||||||||||||||||||||| || |||||||| |||||||||||||
Sbjct 1028 GTCTTATACTTTACCTAAGCTTTTGAAGTGCAACAAG-CGCTATATGTTTGTTAGCGCTT 1086
Query 1138 CAGAGCGTTCCACTGATCTGTCTATACCAAAAGGAAAGAGTTTAGGATTTCGGACACGAG 1197
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1087 CAGATCGTTCCACTGATCTGTCTATACCAAAAGGAAAGAGTTTAGGATTTCGGACACGAG 1146
Query 1198 AGAAGATCTCAGCTTGTATCACTAGAACTAAATCGCGGAGCTTGAAATTAGATTTTGTGC 1257
||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||
Sbjct 1147 AGAAGATCTCAGCTTGTATCAGTAGGACTAAATCGCGGAGTTTGAAATTAGATTTTGTGC 1206
Query 1258 AGAAAGATGAGACAGTGCCACCATTGAAGTTTCCTTTTGACCTGGAGTCTCTTCTCCCAT 1317
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1207 AGAAAGATGAGGCAGTGCCACCATTGAAGTTTCCTTTTGACCTGGAGTCTCTTCTCCCAT 1266
Query 1318 TAGTTGCAGACAAAAACAGAACTGTTGTTCTTTCAGTTGCTGGGTATAGCTATAAGGACA 1377
||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 1267 TAGTTGCAGACAAGAACAGAACTGTTGTTCTTTCAATTGCTGGGTATAGCTACAAGGACA 1326
Query 1378 TGCTGATGAGTTGGGTCTGCAGATTACGCCGCCTCAAAGTTCCAAATTTCTTAGTTTGTG 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1327 TGCTGATGAGTTGGGTCTGCAGATTACGCCGCCTCAAAGTTCCAAATTTCTTAGTTTGTG 1386
Query 1438 CCCTTGATGATGAAACTTATCAGTTTTCTATTTTGCAGGGTCTGCCAGTTTTCTTTGATC 1497
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1387 CCCTTGATGATGAAACTTATCAATTTTCTATATTGCAGGGTCTGCCAGTTTTCTTTGATC 1446
Query 1498 CATACGCTCCAAAGAACATAAGCTTCAATGACTGCCACTTTGGATCAAAGTGTTTCCAGA 1557
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1447 CATACGCTCCAAAGAATATAAGCTTCAATGACTGCCACTTTGGATCAAAGTGTTTCCAGA 1506
Query 1558 GAGTGACCAAAGTCAAGTCAAGAACAGTTTTGAAGATACTGAAGCTGGGCTATAACGTTC 1617
||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 1507 GAGTGACCAAAGTTAAGTCAAGAACAGTTTTGAAGATTCTGAAGTTGGGCTATAACGTTC 1566
Query 1618 TCTTGAGTGATGTAGATGTATATTGGTTCAGAAACCCGTTGCCTCTGCTTCAGTCTTTCG 1677
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1567 TCTTGAGTGATGTAGATGTATATTGGTTCAGAAACCCGTTGCCTCTGCTTCAATCTTTCG 1626
Query 1678 GTCCTTCTGTTCTTGCAGCACAATCTGATGAATACAATACAACAGCACCGATAAACCGAC 1737
|||||||||||||| | |||||||| ||||||||||| ||||||| ||||||||||||||
Sbjct 1627 GTCCTTCTGTTCTTACCGCACAATCCGATGAATACAACACAACAGTACCGATAAACCGAC 1686
Query 1738 CAAGGCGCTTGAACTCAGGATTCTACTTTGCACGTTCTGATAGCCCGACGATAGCAGCGA 1797
||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||| |
Sbjct 1687 CAAGGCGCTTGAACTCAGGATTCTACTTTGCACGTTCAGATGGCCCGACTATAGCAGCAA 1746
Query 1798 TGGAGAAAGTGGTGAAGCATGCTGCAACCTCCGGTCTTTCGGAGCAACCTAGCTTCTACG 1857
||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 1747 TGGAGAAAGTGGTAAAGCATGCTGCAACCTCCAGTCTTTCGGAGCAGCCTAGCTTCTACG 1806
Query 1858 ATACTTTATGCGGAGAAGGTGGAGCTTATCGCTTGGGAGACGATAGATGTGTTGAACCAG 1917
| ||||||||||||||||||||| ||||||| |||||||||||| ||| |||||||||
Sbjct 1807 ACACTTTATGCGGAGAAGGTGGAATTTATCGCGTGGGAGACGATAAATGCCTTGAACCAG 1866
Query 1918 AGACAAATCTGACTGTTCAGTTCTTGGACAGAGAGCTATTCCCAAACGGAGCTTACGGGG 1977
||||||| ||||| ||||| ||||| ||||||||||| ||||| |||||||||||||| |
Sbjct 1867 AGACAAACCTGACCGTTCATTTCTTAGACAGAGAGCTGTTCCCGAACGGAGCTTACGGAG 1926
Query 1978 ATCTATGGCTTAAGGAAGACGTAAGAGCAGAGTGCGAGAAGAAGCATTGCTTTGTTCTAC 2037
|||||||||| |||||||||||||||| |||||||||||||||||| ||||| |||||||
Sbjct 1927 ATCTATGGCTGAAGGAAGACGTAAGAGGAGAGTGCGAGAAGAAGCAGTGCTTCGTTCTAC 1986
Query 2038 ACAACAACTGGATTAGCGGGAGACTGAAGAAACTTGAACGCCAAATGATGAAAGGTCTAT 2097
| ||||||||||| || || |||||||||||||| ||||||||||||||| |||||||||
Sbjct 1987 ATAACAACTGGATCAGTGGAAGACTGAAGAAACTCGAACGCCAAATGATGGAAGGTCTAT 2046
Query 2098 GGGAATATGACGCATCCATGAGGATGTGTGTGTAGAGATGACAAGGTTATACAAGTTAGA 2157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2047 GGGAATATGACGCATCCATGAGGATGTGTGTGTAGAGATGACAAGGTTATACAAGTTAGA 2106
Query 2158 TACTTAGATGGGACATTCAACGGCTCTTGGTAT 2190
|||||||||||||||||||| ||||||||||||
Sbjct 2107 TACTTAGATGGGACATTCAAAGGCTCTTGGTAT 2139
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84446073165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5