BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G70640.1

Length=765
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg926394 jgi|Araly1|926394|scaffold_201955.1                        610    5e-174


> Ahg926394 jgi|Araly1|926394|scaffold_201955.1
Length=583

 Score =  610 bits (330),  Expect = 5e-174
 Identities = 464/527 (88%), Gaps = 15/527 (3%)
 Strand=Plus/Plus

Query  10   AATACAACAACCGTCAAGTTCCTTTGTAGCTACGGTGGCAGAATCACCCCACGTTATCCC  69
            ||| |||| |||||||| ||||| ||||||||||  || |||||||||||||||||||||
Sbjct  30   AATCCAACCACCGTCAAATTCCTCTGTAGCTACGACGGTAGAATCACCCCACGTTATCCC  89

Query  70   GACGGCAAGCTCCGTTATCAAGGCGG-CGATACACGTGTCCTCTCCGTCACTCGCGCCAT  128
            |||||||| |||||||| |||||||| | |||||||||||||||||||| ||||| ||||
Sbjct  90   GACGGCAAACTCCGTTACCAAGGCGGTC-ATACACGTGTCCTCTCCGTCCCTCGCTCCAT  148

Query  129  ATCCTTCACCGAGCTAAAGAAGAAGCTCGGTGAGATTTGCGGGATTGCGGTGACTAGTCT  188
            ||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||
Sbjct  149  ATCCTTCACCGAGCTAACGAAAAAGCTCGGTGAGATTTGCGGGATTGCGGTGAGTAGTCT  208

Query  189  CCGATGTCAGTTACCAACAGATGATCTTGACGCGCTTGTAACGGTAAGATCCGACGAGGA  248
            ||| |||||||||||||| |||||||| |||||||||||||| ||||| |||||||||||
Sbjct  209  CCGGTGTCAGTTACCAACGGATGATCTCGACGCGCTTGTAACCGTAAGCTCCGACGAGGA  268

Query  249  TCTAAAGAATCTTATGGAGGAATACGATCTCGCTATAAC-AGCGCAAGTTAAGATTCACG  307
            |||||||||||| |||||||| ||||||||||||| ||| | |||| |||||||| ||||
Sbjct  269  TCTAAAGAATCTCATGGAGGAGTACGATCTCGCTACAACGA-CGCATGTTAAGATCCACG  327

Query  308  TCTTTCTTTCTCCGCTTAAATCAACGAGAACAACAGCAAACTCGTCTCCTCCACCTTCAA  367
            | || ||||||||||| ||||||| ||| |||||| | |||||||| |||||| ||||||
Sbjct  328  TATTCCTTTCTCCGCTAAAATCAATGAGGACAACAACGAACTCGTCGCCTCCAACTTCAA  387

Query  368  CGACGTCATCTTCTTCGTCAAAATC----A---C--GCTCTCGTTCTCCTCCATCGCCTT  418
            ||||||| |||||||| ||||||||    |   |  ||||||| |||||||||||||| |
Sbjct  388  CGACGTCTTCTTCTTCATCAAAATCGTCGAAATCACGCTCTCGGTCTCCTCCATCGCCGT  447

Query  419  CAACTCCGGAAACATGTCCTAGTTGCGTAGAGAGATCTATACGTAACAATGGATGTTACG  478
            ||||||||||||||||||  |||||||||| |||||| || |||||||||||||| ||||
Sbjct  448  CAACTCCGGAAACATGTCAGAGTTGCGTAGGGAGATCGATGCGTAACAATGGATGCTACG  507

Query  479  TTCATAGAAGTCCAAGTCA-TAACCAATTATACTTCATCAACAATTG  524
            ||||| |||||||||| || ||||||||| ||| || |||| |||||
Sbjct  508  TTCATCGAAGTCCAAG-CAATAACCAATTCTACCTCTTCAATAATTG  553



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28210958580


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5