BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70650.1
Length=1561
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476194 jgi|Araly1|476194|fgenesh2_kg.2__1324__AT1G70650.1 1988 0.0
> Ahg476194 jgi|Araly1|476194|fgenesh2_kg.2__1324__AT1G70650.1
Length=1433
Score = 1988 bits (1076), Expect = 0.0
Identities = 1311/1421 (92%), Gaps = 30/1421 (2%)
Strand=Plus/Plus
Query 79 TCTCATGTTGAGATTCTTCAAGACCGACCATAGATTGTTCCATCGAATCATCGGGTACAC 138
||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 14 TCTCATGACGAGATTCTTCAAGACCGACCATAGATTGTTCCATCGGATCATTAGGTACAC 73
Query 139 AAGACCATTCCACGGTCTAGCTAAAACCCAAAACGCTGAGATCGCTAGACCAGGTTTGGT 198
|| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 74 AAAACCATTCCACGGTCTGGCTAAAACCCAAAACGCTGAGATCTCTAGACCAGGTTTGGT 133
Query 199 TGATCCAAGCTCGCACCCGTGGCCCGAGTGGCTAGATTTAATGGGGATGCTAGCTAAAAA 258
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct 134 TGATCCAAGCTCGCACCCATGGCCCGAGTGGCTAGATTTAATTGGGATGCTAGCGAAAAA 193
Query 259 AGGTTACTTTGAAG-AA--AGCTTGATTCCATTGATGAGTTCCAAGGAATCTAATCATAT 315
||||||||| | || || ||| ||| ||||||||||||||| |||||||| ||||||||
Sbjct 194 AGGTTACTTCGTAGAAAGCAGCATGAATCCATTGATGAGTTCTAAGGAATCGAATCATAT 253
Query 316 TCGTACAGCTTGTCTCAATTTCGCCCGCCATCGTTTCACTCTCGTCAGAAACTTGTCGAA 375
|||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||| ||
Sbjct 254 TCGTACTGCTTGTCTCAATTTTGCCCGCCATCGTTTCACTCTCGTCAGATACTTGTCAAA 313
Query 376 GAAAGATATCAAAGTGATTGCTGGGTGTGGATGTCCAAGCACTGATAGGAAGGTCGTGAA 435
|||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 314 GAAAGATATCAAAGTGATTGCTGGCTGTGGATGTCCTAGCACTGATAGAAAGGTCGTGAA 373
Query 436 CTCAGGAAAGCGTCTAAGAGCTTATGTGGGCATTGATGAAGGAAATGTGTGTGGCTCCTG 495
||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 374 CTCGGGAAAGCGTTTAAGAGCTTATGTGGGTATTGATGAAGGAAATGTGTGTGGCTCTTG 433
Query 496 CAACTTGAGAGGGAAATGTGAAAGGGCGTATGCACAAGCACGGGATGATGAAGGTGCTCG 555
||||||||||||| |||| |||||||||||||||||||||| ||||||||||||| |||
Sbjct 434 CAACTTGAGAGGGGAATGCCAAAGGGCGTATGCACAAGCACGAGATGATGAAGGTGTTCG 493
Query 556 AACTATAGATGTCATGCGTTTACTGCTAACTTATGGGCTTGATTCCATTTCTCCTACTGT 615
|||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 494 AACTATAGATATCATGCGTATACTTTTAACTTATGGGCTTGATTCCATTTCTCCTACTGT 553
Query 616 TGAGAATCGTGCCTGTCAAACCAAACTTGTTGAAGATTCTGTGAGGAAGTTGCTCAGAGA 675
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 554 GGAGAATCGTGCCTGTCAAACCAAACTTGTTGAAGATTCTGTGAGGAAGTTGCTTAGAGA 613
Query 676 AAGTGTAGCGTATAGCTTAACAGATTTTGAATCTGCTGAGACTGAGACAGCTGGAGATGA 735
||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 614 AAGTGTAGCCTATAGCTTAAAAGATTTTGAATCTGCTGAGACTCAGACAGCTGGAGATGA 673
Query 736 GCTCCAGCCAAATTCACAGGACAT-TGATGAAAGAGATCCACGAAAAAGGCCAGGGGATT 794
|||||||||||||||||||||| | ||| || ||||||||||||||||||||||||||||
Sbjct 674 GCTCCAGCCAAATTCACAGGAC-TGTGAGGAGAGAGATCCACGAAAAAGGCCAGGGGATT 732
Query 795 GGTATTGTACAGAATGCAAGTTTCTAAATTTTGCGAAAAACATAAGATGCTTGCGATGTG 854
|| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 733 GGCATTGTACAGAATGCAAGTTCCTAAATTTTGCGAAAAACATTAGATGCTTGCGATGTG 792
Query 855 ATGTTTTTTCTGAGGAAAGGCTTAAACAGTTGAAGGAAGAACAAAAAGATCATCTCCCAC 914
|||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 793 ATGTGTTTTCTGAGGAAAGGCTGAAACAGTTGAAGGAAGAACAGAAAGATCATCTCCCAC 852
Query 915 TGAAGAAAGGAGATTGGATTTGTCAAACATGTAATTTCCTGAACTTTTCGAAAAACACGA 974
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 853 TGAAGAAAGGAGACTGGATTTGTCAAACATGCAATTTCCTGAACTTTTCGAAAAACACAA 912
Query 975 GATGCTTAAGGTGCAAAGACAAGCCTACATTGCGTCAAATCAATCCCGGAGAGTGGGAAT 1034
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 913 GATGCTTAAGGTGCAAAGACAAGCCTACATTGCGTCAAATCAATCCGGGAGAGTGGGAAT 972
Query 1035 GCGAGTCGTGCAATTACATCAATTTTAGAAGAAACTCTA-TATGTTTGAAGTGTGATCAC 1093
||||||||||||||||||||||||| ||||||||| | | ||||||||||||||||||||
Sbjct 973 GCGAGTCGTGCAATTACATCAATTTCAGAAGAAACGC-AGTATGTTTGAAGTGTGATCAC 1031
Query 1094 AAGAGACAAAAGGCTGCAAACGTCACT-CCGGATTCAAAGACAGTT-GCTGATCGTCA-A 1150
||||||||||||||| |||| |||| | ||||||||||||| | | | ||||||||| |
Sbjct 1032 AAGAGACAAAAGGCTTCAAATGTCA-TACCGGATTCAAAGATGGGTAG-TGATCGTCACA 1089
Query 1151 AGCGGAGTTACAAAGACGTGGAGCTTTGTAGAAGAAG-AGA-GT-GTAA-AACGATGCAA 1206
| |||||||||||||||||||| ||||||||||||| ||| | | || ||| | | ||
Sbjct 1090 AT-GGAGTTACAAAGACGTGGAGTTTTGTAGAAGAAGGAGAAGAAG-AAGAAC-A-G-AA 1144
Query 1207 TGGCGAAGAAGAGGAAGAAGAAGATGGTTTCATGGGATTTCCAGTAGAGGGAGGGAGAAG 1266
|| ||||| | |||||||||||||| |||||| |||||||||| || |||||||||||
Sbjct 1145 -GG--AAGAAAAAGAAGAAGAAGATGGCTTCATGAGATTTCCAGTGGAAGGAGGGAGAAG 1201
Query 1267 CAATGTTTCAAAGAGCGCAGAAAAGAGAGAGCAATGGAAGTTGGAGATGACACAGAGAAT 1326
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1202 TAATGTTTCAAAGAGCGCAGAAAAGAGAGAGCAATGGAAGTTGGAGATGACAGAGAGGAT 1261
Query 1327 TAGAAGCAATGGGACTAAAGCGAAAAAAGATGATAATACGAAGAA------CGAAACAGA 1380
|||||||||||||||| |||||||||||||| || |||||||||| ||||| |||
Sbjct 1262 TAGAAGCAATGGGACTGAAGCGAAAAAAGATCATGATACGAAGAAGAAGAACGAAAAAGA 1321
Query 1381 GTCAAAATGTTATGATCGGAGAAGAAATGAACTTCTTGGTAACATTAGTGATGATGGAGA 1440
||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1322 GTCAAGATGTTATGACCGGAGAAGAAATGAGCTTCTTGGTAACATTAGTGATGATGGAGA 1381
Query 1441 GATGGATGATTGGTTTGTTTCAAAACAAGATAGATCGACTT 1481
|||||||||||||||||||||||||||||||||||||||||
Sbjct 1382 GATGGATGATTGGTTTGTTTCAAAACAAGATAGATCGACTT 1422
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58468526075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5