BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70660.1
Length=840
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476195 jgi|Araly1|476195|fgenesh2_kg.2__1325__AT1G70660.1 1105 0.0
Ahg921378 jgi|Araly1|921378|scaffold_102659.1 479 2e-134
> Ahg476195 jgi|Araly1|476195|fgenesh2_kg.2__1325__AT1G70660.1
Length=783
Score = 1105 bits (598), Expect = 0.0
Identities = 706/757 (93%), Gaps = 12/757 (2%)
Strand=Plus/Plus
Query 89 ttcttcatcttctctAGCCGAATCCATCCTTCAGATACTACTCTGTAA-TTTCACTACAA 147
|||||||||| |||| ||| || |||||||||||||| |||||||| |||||| ||||
Sbjct 34 TTCTTCATCTACTCTCGCC-AA---ATCCTTCAGATACTGCTCTGTAATTTTCACCACAA 89
Query 148 TCATCTCAGCCAAATGGGTTCGGAAGAAGAGAAGGTCGTTGTTCCCAGAAACTTTAGATT 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 90 TCATCTCAGCCAAATGGGTTCGGAAGAAGAGAAGGTCGTTGTTCCCAGAAACTTTAGATT 149
Query 208 ATTGGAAGAGCTAGAAAGAGGTGAGAAAGGAATTGGAGATGGGACAGTGAGTTATGGAAT 267
||| |||||||| ||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 150 ATTAGAAGAGCTTGAAAGAGGTGAGAAAGGAATTGGAGATGGCACTGTGAGCTATGGAAT 209
Query 268 GGATGATGCTGATGATATTTTGATGCAATCTTGGACTGGTACCATTCTTGGTCCTCATAA 327
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 210 GGATGATGCTGATGATATTTTGATGCAATCTTGGACTGGTACCATTATTGGTCCTCACAC 269
Query 328 TACTGCGTATGAAGGGAAAATCTTTCAGCTGAAGCTATTCTGTGGAAAGGATTATCCGGA 387
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 270 TACTGCGTATGAAGGGAAAATCTTTCAGCTGAAGCTTTTCTGTGGAAAGGATTATCCGGA 329
Query 388 AAGTCCACCTACTGTGAGGTTTCAGAGTCGTATAAACATGGCTTGTGTCAATCCTGAGAA 447
||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||| ||
Sbjct 330 AAGTCCACCTACTGTGAGGTTCCAGACTCGGATAAACATGGCTTGTGTCAATCCTGAAAA 389
Query 448 TGGAGTGGTTGATCCGAGTCACTTCCCTATGCTTTCCAACTGGAGAAGAGAATTCACAAT 507
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||
Sbjct 390 TGGAGTGGTTGATCCGAGTCACTTCCCTATGCTCTCCAACTGGAGAAGAGAATACACCAT 449
Query 508 GGAGGATCTACTGATTCAGCTTAAAAAAGAAATGATGTCATCGCAGAACCGCAAGTTAGC 567
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 450 GGAGGATTTACTGATTCAGCTTAAAAAAGAAATGATGTCATCGCAGAACCGCAAGTTAGC 509
Query 568 TCAACCCTTGGAAGGTAATGAGGAAGGCAGGACAGACCCAAAGGGACTAGTGGTGAAATG 627
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 510 TCAACCCTTGGAAGGTAATGAGGAAGGAAGAACAGACCCAAAGGGACTAGTGGTGAAATG 569
Query 628 TTGCGTGATGTGAAAAGAGGTAATGAGGAATTTATAAGAATTTAAGAGACAAAACAATGT 687
||| || |||||| | ||| |||||||||||| ||||||||||||||||||| ||||||
Sbjct 570 TTGTGTCATGTGAGGA-AGGCAATGAGGAATTTGTAAGAATTTAAGAGACAAA-CAATGT 627
Query 688 ATATAAACAGCATTTGAAG-GGCTTTGAGATTG---GCCTAAGAACCCTTTCTTCTATAG 743
||||||| | |||| ||| ||||||||||||| |||| |||||||||||||||| ||
Sbjct 628 ATATAAAGATCATT-GAAAAGGCTTTGAGATTGTCTGCCTCAGAACCCTTTCTTCTACAG 686
Query 744 GCCTTCTTAATCCTACCATTTGATTATGTATTATGTAATATTTGAGAATATATTCACCAA 803
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 687 GCCTTCTTAATCCTGCCATTTGATTATGTATTATGTAATATTTGAGAATATATCCACCAA 746
Query 804 AAACAGGTGCCCTTAATAAACCTCCACTCTTCTTCAC 840
|||||||||||||||||| ||||||| ||| ||||||
Sbjct 747 AAACAGGTGCCCTTAATAGACCTCCATTCTCCTTCAC 783
> Ahg921378 jgi|Araly1|921378|scaffold_102659.1
Length=519
Score = 479 bits (259), Expect = 2e-134
Identities = 418/493 (85%), Gaps = 17/493 (3%)
Strand=Plus/Plus
Query 161 ATGGGTTCGGAAGAAGAGAAGGTCGTTGTTCCCAGAAACTTTAGATTATTGGAAGAGCTA 220
||| ||||||| |||| |||||||||||||| || ||||||||||| |||||||||||
Sbjct 23 ATGAGTTCGGAGGAAGCCAAGGTCGTTGTTCCGAGGAACTTTAGATTGTTGGAAGAGCTT 82
Query 221 GAAAGAGGTGAGAAAGGAATTGGAGATGGGACAGTGAGTTATGGAATGGATGATGCTGAT 280
||||||||||||||||| ||||||||||| || || || |||||||||||||||||||||
Sbjct 83 GAAAGAGGTGAGAAAGGTATTGGAGATGGTACTGTAAGCTATGGAATGGATGATGCTGAT 142
Query 281 GATATTT-TGATGCAATCTTGGACTGGTACCATTCTTGGTCCTC-ATAATACTGCGTATG 338
||||||| | ||||||||||||||||| |||||||||||||||| | |||||||| || |
Sbjct 143 GATATTTAT-ATGCAATCTTGGACTGGCACCATTCTTGGTCCTCCA-AATACTGCATACG 200
Query 339 AAGGGAAAATCTTTCAGCTGAAGCTATTCTGTGGAAAGGATTATCCGGAAAGTCCACCTA 398
||||||||||||| ||||||||||| |||||||| ||||| || || ||||||||||| |
Sbjct 201 AAGGGAAAATCTTCCAGCTGAAGCTGTTCTGTGGTAAGGAGTACCCTGAAAGTCCACCAA 260
Query 399 CTGTGAGGTTTCAGAGTCGTATAAACATGGCTTGTGTCAATCCTGAGAAT--GGAGTGGT 456
||||||||| |||| || ||||||||||||||||| || || ||||| ||||||||
Sbjct 261 GTGTGAGGTTCCAGACCCGGATAAACATGGCTTGTGTTAACCC--AGAATCTGGAGTGGT 318
Query 457 TGATCCGAGTCACTTCCCTATGCTTTCCAACTGGAGAAGAGAATTCACAATGGAGGATC- 515
||| ||||||| |||||||||||| | || ||| | | |||| |||||||||||| |
Sbjct 319 TGAACCGAGTCTCTTCCCTATGCTCACTAATTGGCGGCGCGAATACACAATGGAGGA-CA 377
Query 516 TACTGATTCAGCTTAAAAAAGAAATGATGTCATCGCAGAACCGCAAGTTAGCTCAACCCT 575
||||| || |||| ||||||||||||||| | || || ||||| |||||||||||||||
Sbjct 378 TACTGGTTAAGCTGAAAAAAGAAATGATGACTTCACATAACCGGAAGTTAGCTCAACCCC 437
Query 576 -TGGAAGGTAATGAGGAAGGC-AGGACAGACCCAAAGGGACTAGTGGTGAAATGTTGCGT 633
|| ||||||| ||||||| | ||| ||| |||||||||| || | |||||||| ||
Sbjct 438 CTG-AAGGTAACGAGGAAG-CTAGGGTAGATCCAAAGGGACCAGC--T-AAATGTTGTGT 492
Query 634 GATGTGAAAAGAG 646
|||||||| ||||
Sbjct 493 GATGTGAAGAGAG 505
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31070177355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5