BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70670.1
Length=1039
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926397 jgi|Araly1|926397|scaffold_201958.1 1013 0.0
Ahg926398 jgi|Araly1|926398|scaffold_201959.1 701 0.0
> Ahg926397 jgi|Araly1|926397|scaffold_201958.1
Length=631
Score = 1013 bits (548), Expect = 0.0
Identities = 594/617 (96%), Gaps = 0/617 (0%)
Strand=Plus/Plus
Query 234 tctctcattctGATCATGGCTTCCTCTATTTCCACTGGAGTGAAATTTGTTCCAGAAGAA 293
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 9 TCTCTCATTCCCATCATGGCTTCCTCTATTTCCACTGGAGTGAAATTTGTTCCAGAAGAA 68
Query 294 GATAATTTCTTGCAGAGACATGTCGCTTTTTTCGATAGGAACAAAGATGGTATCGTTTAT 353
|||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 69 GATAATTTCTTGCAAAGACATGTTGCTTTTTTCGATAGGAACAAAGATGGCATCGTTTAT 128
Query 354 CCCTCGGAGACATTTCAAGGATTTAGAGCAATTGGGTGTGGATATTTGTTGTCAGCAGTC 413
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 CCCCCGGAGACATTTCAAGGATTTAGAGCAATTGGGTGTGGATATTTGTTGTCAGCAGTT 188
Query 414 GCTTCTGTGTTCATAAACATAGGTCTCAGCAGCAAAACTCGTCCGGGTAAAGGATTCTCT 473
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 189 GCTTCTGTGTTCATAAACATAGGTCTCAGCAGCAAAACTCGTCCGGGTAAAGGATTCTCG 248
Query 474 ATCTGGTTTCCTATAGAGGTTAAGAATATTCACCTTGCCAAACACGGAAGCGATTCAGGC 533
|| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 249 ATGTTGTTTCCTATAGAGGTTAAGAATATTCACCTTGCCAAACATGGAAGCGATTCAGGA 308
Query 534 GTTTACGACAAAGATGGACGGTTTGTTGCTTCGAAGTTTGAGGAGATATTTACGAAGCAT 593
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 309 GTTTACGACAAAGATGGACGGTTTGTGGCTTCGAAGTTTGAGGAGATATTTGCGAAGCAT 368
Query 594 GCACACACACATCGCGATGCTTTGACCAACGAGGAACTCAAACAACTCCTAAAGGCAAAC 653
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 369 GCACACACACATCGCGATGCTTTGACCAACGAGGAACTCAAACAACTACTAAAGGCAAAC 428
Query 654 AAAGAACCTAATGATCGTAAAGGATGGCTTGCAGGGTATACGGAGTGGAAGGTATTGCAT 713
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 429 AAAGAACCTAATGATCGTAAAGGATGGATTGCAGGGTATACGGAGTGGAAGATATTGCAT 488
Query 714 TATTTGTGTAAAGACAAGAATGGTTTGTTGCACAAAGACACAGTGAGAGCTGCCTACGAT 773
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 489 TATTTGTGCAAAGACAAGAACGGTTTGTTGCACAAAGACACAGTGAGAGCTGCCTACGAT 548
Query 774 GGTTCTCTTTTCGAAAAACTCGAGAAACAAAGATCTTCTAAAACTTCTAAGAAACATCCA 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 GGTTCTCTTTTCGAAAAACTCGAGAAACAAAGATCTTCTAAAACTTCTAAGAAACATCCA 608
Query 834 TAAATCCTTATTTAAAT 850
|||| || || |||||
Sbjct 609 TAAACCCCAATCTAAAT 625
> Ahg926398 jgi|Araly1|926398|scaffold_201959.1
Length=632
Score = 701 bits (379), Expect = 0.0
Identities = 549/630 (87%), Gaps = 15/630 (2%)
Strand=Plus/Plus
Query 231 ttttctct-cat-tctGATCATGGCTTCCTCTATTTCCACTG--G-AGTGAAATTTGTTC 285
|||||||| || |||||| ||||||||||||||| |||||| | ||||||| ||||||
Sbjct 1 TTTTCTCTATATCTCTGATTATGGCTTCCTCTATTCCCACTGCTGAAGTGAAAGTTGTTC 60
Query 286 CAGAAGAAGATAATTTCTTGCAGAGACATGTCGCTTTTTTCGATAGGAACAAAGATGGTA 345
||||| |||||||||||||||| ||||||||||| | ||||| || || |||||||| |
Sbjct 61 CAGAAAAAGATAATTTCTTGCAAAGACATGTCGCCTACTTCGACAGAAATAAAGATGGCA 120
Query 346 TCGTTTATCCCTCGGAGACATTTCAAGGATTTAGAGCAATTGGGTGTGGATATTTGTTGT 405
||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 121 TCGTTTATCCCTCAGAGACATTTCAAGGATTTAGAGCAATCGGATGTGGATATTTGTTGT 180
Query 406 CAGCAGTCGCTTCTGTGTTCATAAACAT-AGGTCTCAGCAGCAAAACTCGTCCGGGTAAA 464
||||| ||||| | |||||||| ||||| | ||||||||||||||||||||||||| |||
Sbjct 181 CAGCATTCGCTGCCGTGTTCATCAACATCA-GTCTCAGCAGCAAAACTCGTCCGGGGAAA 239
Query 465 GGATTCTCTA-TCTGGTTTCCTATAGAGGTTAAGAATATTC-ACCTTGCCAAACACGGAA 522
|||||||| | ||| |||||| |||||||||||||||| || |||||| || ||| | |
Sbjct 240 GGATTCTC-ATTCTCGTTTCCGATAGAGGTTAAGAATA-TCAACCTTGGCATACATAGCA 297
Query 523 GCGATTCAGGCGTTTACGACAAAGATGGACGGTTTGTTGCTTCGAAGTTTGAGGAGATAT 582
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 298 GCGATTCAGGCGTTTACGACAAAGATGGACGGTTTGTGGCTTCGAAGTTCGAGGAGATAT 357
Query 583 TTACGAAGCATGCACACACACATCGCGATGCTTTGACCAACGAGGAACTCAAACAACTCC 642
|| |||||||||| ||||||||||| ||||||||||||||| ||||||| ||| |||| |
Sbjct 358 TTGCGAAGCATGCTCACACACATCGTGATGCTTTGACCAACAAGGAACTTAAAGAACTTC 417
Query 643 TAAAGGCAAACAAAGAACCTAATGATCGTAAAGGATGGC-TTGCAGGGTATACGGAGTGG 701
| |||||||||| ||||||||||||| ||| |||| || || || | | |||||||
Sbjct 418 TCAAGGCAAACAGAGAACCTAATGATTGTAGAGGA-GGAATTTTAGCATTTGGGGAGTGG 476
Query 702 AAGGTATTGCATTATTTGTGTAAAGACAAGAATGGTTTGTTGCACAAAGACACAGTGAGA 761
||||||||| || ||||||| ||||||||||| |||||| | |||||||| |||||||||
Sbjct 477 AAGGTATTGTATAATTTGTGCAAAGACAAGAACGGTTTGCTACACAAAGAGACAGTGAGA 536
Query 762 GCTGCCTACGATGGTTCTCTTTTCGAAAAACTCGAGAAACAAAGATCTTCTAAAACTTCT 821
|| | ||| ||||| |||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct 537 GCCGTCTATGATGGGTCTCTTTTCGAACAACTCGAGAAACAAAGATCTTCTCAAACTCCT 596
Query 822 AAGAAACATCCATAAATCCTTATT-TAAAT 850
||||| ||| |||||||| ||| | |||||
Sbjct 597 AAGAATCATTCATAAATC-TTAATGTAAAT 625
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38656637838
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5