BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70680.1
Length=893
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926398 jgi|Araly1|926398|scaffold_201959.1 924 0.0
Ahg926397 jgi|Araly1|926397|scaffold_201958.1 647 0.0
> Ahg926398 jgi|Araly1|926398|scaffold_201959.1
Length=632
Score = 924 bits (500), Expect = 0.0
Identities = 576/613 (94%), Gaps = 3/613 (0%)
Strand=Plus/Plus
Query 102 TTTTCTCTCTATCTGTGATTATGGCTTCCTCTATTTCCGCTGCTGAAGTGAAAGTTGTCC 161
|||||||| ||||| |||||||||||||||||||| || ||||||||||||||||||| |
Sbjct 1 TTTTCTCTATATCTCTGATTATGGCTTCCTCTATTCCCACTGCTGAAGTGAAAGTTGTTC 60
Query 162 CAG-AAGAGTATAATTTCTTGCAAAAACATGTCGCCTTCTTCGACAGAAACAAAGATGGT 220
||| || || ||||||||||||||| ||||||||||| |||||||||||| ||||||||
Sbjct 61 CAGAAAAAG-ATAATTTCTTGCAAAGACATGTCGCCTACTTCGACAGAAATAAAGATGGC 119
Query 221 ATCGTTTATCCCTCGGAGACATTTCAAGGATTTAGAGCAATCGGATGTGGATATTTGTTG 280
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 ATCGTTTATCCCTCAGAGACATTTCAAGGATTTAGAGCAATCGGATGTGGATATTTGTTG 179
Query 281 TCAACATTCGCTGCTGTTTTCATCAACATCAGTCTCAGCAGCAAAACTCGTCCGGGGAAA 340
||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCAGCATTCGCTGCCGTGTTCATCAACATCAGTCTCAGCAGCAAAACTCGTCCGGGGAAA 239
Query 341 GGATTCTCATTCTCGTTTCCGATAGAGGTTAAGAATGTCCGCCTAGGGATACATAGCAGC 400
|||||||||||||||||||||||||||||||||||| || ||| || ||||||||||||
Sbjct 240 GGATTCTCATTCTCGTTTCCGATAGAGGTTAAGAATATCAACCTTGGCATACATAGCAGC 299
Query 401 GATTCAGGCGTTTACGACAAGGATGGACGGTTTGTGGCTTCAAAGTTCGAGGAGATATTT 460
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 300 GATTCAGGCGTTTACGACAAAGATGGACGGTTTGTGGCTTCGAAGTTCGAGGAGATATTT 359
Query 461 GCGAAGCATGCTCACACACATCGCGATGCTTTGACCAGCAAGGAACTTAAAGAACTTCTC 520
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 360 GCGAAGCATGCTCACACACATCGTGATGCTTTGACCAACAAGGAACTTAAAGAACTTCTC 419
Query 521 AAGGCAAACAGAGAACCTAATGATTGTAAAGGAGGGATTTTAGCGTTTGGGGAGTGGAAG 580
|||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||
Sbjct 420 AAGGCAAACAGAGAACCTAATGATTGTAGAGGAGGAATTTTAGCATTTGGGGAGTGGAAG 479
Query 581 GTATTGTATAATTTGTGCAAAGACAAGAGTGGTTTGCTACACAAGGAGATAGTGAGAGCC 640
|||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||
Sbjct 480 GTATTGTATAATTTGTGCAAAGACAAGAACGGTTTGCTACACAAAGAGACAGTGAGAGCC 539
Query 641 GTCTATGATGGTTCTCTTTTCGAACAACTCGAGAAACAAAGATCTTCTAAAACTCCTTAG 700
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 540 GTCTATGATGGGTCTCTTTTCGAACAACTCGAGAAACAAAGATCTTCTCAAACTCCTAAG 599
Query 701 AATCAT-Caaaaa 712
|||||| || |||
Sbjct 600 AATCATTCATAAA 612
> Ahg926397 jgi|Araly1|926397|scaffold_201958.1
Length=631
Score = 647 bits (350), Expect = 0.0
Identities = 513/591 (87%), Gaps = 13/591 (2%)
Strand=Plus/Plus
Query 122 ATGGCTTCCTCTATTTCCGCTGCTGAAGTGAAAGTTGTCCCAGAAG-AGTATAATTTCTT 180
|||||||||||||||||| ||| | ||||||| |||| ||||||| || ||||||||||
Sbjct 24 ATGGCTTCCTCTATTTCCACTG--G-AGTGAAATTTGTTCCAGAAGAAG-ATAATTTCTT 79
Query 181 GCAAAAACATGTCGCCTTCTTCGACAGAAACAAAGATGGTATCGTTTATCCCTCGGAGAC 240
||||| |||||| || || ||||| || ||||||||||| |||||||||||| |||||||
Sbjct 80 GCAAAGACATGTTGCTTTTTTCGATAGGAACAAAGATGGCATCGTTTATCCCCCGGAGAC 139
Query 241 ATTTCAAGGATTTAGAGCAATCGGATGTGGATATTTGTTGTCAACA-TTCGCTGCTGTTT 299
||||||||||||||||||||| || |||||||||||||||||| || || ||| |||| |
Sbjct 140 ATTTCAAGGATTTAGAGCAATTGGGTGTGGATATTTGTTGTCAGCAGTT-GCTTCTGTGT 198
Query 300 TCATCAACATCAG-TCTCAGCAGCAAAACTCGTCCGGGGAAAGGATTCTC-AT-TCTCGT 356
|||| ||||| || |||||||||||||||||||||||| ||||||||||| || | | ||
Sbjct 199 TCATAAACAT-AGGTCTCAGCAGCAAAACTCGTCCGGGTAAAGGATTCTCGATGT-T-GT 255
Query 357 TTCCGATAGAGGTTAAGAATGTCCGCCTAGGGATACATAGCAGCGATTCAGGCGTTTACG 416
|||| ||||||||||||||| | | ||| | | |||| | ||||||||||| |||||||
Sbjct 256 TTCCTATAGAGGTTAAGAATATTCACCTTGCCAAACATGGAAGCGATTCAGGAGTTTACG 315
Query 417 ACAAGGATGGACGGTTTGTGGCTTCAAAGTTCGAGGAGATATTTGCGAAGCATGCTCACA 476
|||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||
Sbjct 316 ACAAAGATGGACGGTTTGTGGCTTCGAAGTTTGAGGAGATATTTGCGAAGCATGCACACA 375
Query 477 CACATCGCGATGCTTTGACCAGCAAGGAACTTAAAGAACTTCTCAAGGCAAACAGAGAAC 536
||||||||||||||||||||| | ||||||| ||| |||| || |||||||||| |||||
Sbjct 376 CACATCGCGATGCTTTGACCAACGAGGAACTCAAACAACTACTAAAGGCAAACAAAGAAC 435
Query 537 CTAATGATTGTAAAGGAGGGATTTTAGCGTTTGGGGAGTGGAAGGTATTGTATAATTTGT 596
|||||||| |||||||| ||||| || || | |||||||||| ||||| || ||||||
Sbjct 436 CTAATGATCGTAAAGGATGGATTGCAGGGTATACGGAGTGGAAGATATTGCATTATTTGT 495
Query 597 GCAAAGACAAGAGTGGTTTGCTACACAAGGAGATAGTGAGAGCCGTCTATGATGGTTCTC 656
|||||||||||| |||||| | ||||| || | ||||||||| | ||| ||||||||||
Sbjct 496 GCAAAGACAAGAACGGTTTGTTGCACAAAGACACAGTGAGAGCTGCCTACGATGGTTCTC 555
Query 657 TTTTCGAACAACTCGAGAAACAAAGATCTTCTAAAACTCCTTAGAATCATC 707
|||||||| ||||||||||||||||||||||||||||| || |||| ||||
Sbjct 556 TTTTCGAAAAACTCGAGAAACAAAGATCTTCTAAAACTTCTAAGAAACATC 606
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33090691956
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5