BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70690.1
Length=1248
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476197 jgi|Araly1|476197|fgenesh2_kg.2__1327__AT1G70690.1 1674 0.0
> Ahg476197 jgi|Araly1|476197|fgenesh2_kg.2__1327__AT1G70690.1
Length=1161
Score = 1674 bits (906), Expect = 0.0
Identities = 1088/1173 (93%), Gaps = 23/1173 (2%)
Strand=Plus/Plus
Query 87 ATGATCAAGAC-AA-A-GACGACGTCCCTTCTCTGTTTCCTTCTCA-CAGCCGTTATACT 142
||| ||||||| || | |||||||||||||||||||||| |||||| | ||||| || ||
Sbjct 1 ATGTTCAAGACAAAGACGACGACGTCCCTTCTCTGTTTCTTTCTCATC-GCCGTCATCCT 59
Query 143 AATGAACCCATCTTCCTCCTCCCCCACTGACAATTACATATACGCCGTTTGTTCTCCGGC 202
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 60 TATGAACCCATCTTCCTCCTCCCCCACGGACAATTACATATACGCCGTTTGTTCTCCGGC 119
Query 203 TAAATTCTCCCCTAGCTCCGGCTACGAGACAAATCTTAACTCCCTCCTCTCTTCCTTCGT 262
|||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 120 AAAATTCTCTCCTAGCTCCGGCTACGAGACAAATCTAAACTATCTCCTCTCTTCCTTCGT 179
Query 263 CACCTCAACCGCCCAAACCCGCTACGCCAACTTCACAGTTCCCACCGGGAAACCGGAACC 322
|| ||| |||||||||| |||||||||||||||||| ||||||||||| |||||||||||
Sbjct 180 CAGCTCCACCGCCCAAAGCCGCTACGCCAACTTCACGGTTCCCACCGGAAAACCGGAACC 239
Query 323 AACCGTTACCGTATACGGTATTTACCAGTGCCGCGGCGACCTAGACCCAACCGCCTGCTC 382
|||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 240 AACCGTTACCGTATACGGCCTTTACCAGTGCCGCGGCGACCTCGACCCAACCGCCTGCTC 299
Query 383 GACGTGCGTATCAAGCGCCGTCGCACAGGTCGGAGCCTTATGTTCAAACTCGTACTCCGG 442
|||||||||||||||||||||||||||||| ||| |||||||||| ||||| || || ||
Sbjct 300 GACGTGCGTATCAAGCGCCGTCGCACAGGTTGGAACCTTATGTTCTAACTCATATTCAGG 359
Query 443 GTTCTTGCAGATGGAAAATTGTCTGATCCGTTACGACAACAAATCGTTCCTTGGGGTTCA 502
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 360 GTTCTTGCAGTTGGAGAATTGTCTGATCCGTTACGACAACAAATCGTTCCTTGGGATTCA 419
Query 503 AGACAAAACGTTGATCCTCAACAAATGTGGACAGCCGATGGAATTCAACGACCAGGATGC 562
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 420 AGACAAAACGTTGATCCTCAACAAATGTGGACAGGCGATGGAATTCAACGACCAGGATGC 479
Query 563 GTTGACCAAAGCTAGTGACGTCATCGGTTCTTTAGGTACCGGAGATGGATCTTACAGG-A 621
||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||| |
Sbjct 480 GTTGACCAAAGTTAGTGACGTCATCGGTTCTTTAGGTTCCGGAGATGGACCTTACAGGAA 539
Query 622 CAGGTGGCAACGGGAATGTTCAGGGTGTGGCTCAGTGCTCCGGTGATCTAAGTACATCAC 681
| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 540 C-GGTGGCAACGGGAATGTTCAAGGTGTGGCTCAGTGCTCCGGCGATCTAAGTACATCAC 598
Query 682 AGTGCCAAGATTGCTTGTCTGATGCAATCGGACGGCTCAAATCTGATTGTGGAATGGCTC 741
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AGTGCCAGGATTGTTTGTCTGATGCAATCGGACGGCTCAAATCTGATTGTGGAATGGCTC 658
Query 742 AGGGAGGATATGTTTACTTGTCGAAATGTTACGCGCGTTTCAGTGTTGGTGGTAGTCACG 801
|||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 659 AGGGAGGATACGTTTACTTGTCCAAGTGTTACGCGCGTTTCAGTGTTGGTGGTAGTCACG 718
Query 802 CGCGTCAGACCCCAGGCCCAAACTTTGGTCATGAAGGAGAGAAGGGCAATAAGGATGATA 861
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 719 CGCGTCAGACCCCAGGCCCAAACTTTGGTCATGAAGGAGAGAAGGACAATAAAGATGATA 778
Query 862 ATGGAGT-GGGAAAAACATTGGCGATAATAATAGGAATCGTCACCTTAATCATCTTGCTC 920
|||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ATGGGGTCGGGAAAA-CATTGGCGATAATAATAGGAATCGTCACCTTAATCATCTTGCTC 837
Query 921 GTTGTGTTTCTCGCTTTTGTTGGAAAGTGTTGTAGAAAATTACAAGATGAGAAATGGTGT 980
|| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 838 GTCGTGTTTCTCGCTTTTCTTGGAAAGCAATGTAGAAAATTACAAGATGAGAAATGGTGT 897
Query 981 AAATGAAAGGACAAAGTGGGAAA-GATATCAATCAACAACTCGAGTCGAGCCACACTGTT 1039
|||||| |||| ||||||||||| | ||||||||||||||||||| ||||||| || |
Sbjct 898 AAATGAGAGGAAAAAGTGGGAAACGG-ATCAATCAACAACTCGAGTAGAGCCAC--TGCT 954
Query 1040 AGTTGTATTTTTGTAAttttttttGTTCTCCCTCATAAGATGTACGTAGTTATAGTATAT 1099
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 955 AGTTGTATTTTTGTAATATTTTT-GTTCTCCCTCATAAGATGTACGTAGTTATAGTATAT 1013
Query 1100 TGATA-ATTTGATATAGTAT-TGATATGATTGTATCTCCGAATCGATTTTTGTATAATTG 1157
| ||| || | ||||| ||| | ||||||||||||||||||| |||||||||||||||||
Sbjct 1014 TAATATATATAATATA-TATAT-ATATGATTGTATCTCCGAAACGATTTTTGTATAATTG 1071
Query 1158 TCGGACTTATATAGGCCAAAGCGATATCTTCTT-CTTTGATGTGAATGAAACCTTCGATT 1216
|||||||||||||||||||| |||||||||||| |||||| ||||||||||| |||||||
Sbjct 1072 TCGGACTTATATAGGCCAAATCGATATCTTCTTTCTTTGACGTGAATGAAACATTCGATT 1131
Query 1217 TCTTATCTTCTATAAATGCCATGTTTTTC-GTC 1248
| |||||| ||||||||||| |||||| |||
Sbjct 1132 TGGTATCTT--ATAAATGCCAT-TTTTTCCGTC 1161
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46624327491
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5