BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70700.1
Length=1247
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476200 jgi|Araly1|476200|fgenesh2_kg.2__1330__AT1G70700.3 1458 0.0
> Ahg476200 jgi|Araly1|476200|fgenesh2_kg.2__1330__AT1G70700.3
Length=1221
Score = 1458 bits (789), Expect = 0.0
Identities = 1017/1120 (91%), Gaps = 44/1120 (4%)
Strand=Plus/Plus
Query 152 TTGAGAGTTTGTCATTGAATATTTGGTTTGCAATGGAAAGAGATTTTCTGGGTTTGAGCG 211
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 112 TTGAGAGTTTGTCATTG---ATTTGGTTTGCAATGGAAAGAGATTTTCTGGGTTTGAGCG 168
Query 212 ACAAGCAGTATCTAAGTAATAACGTTAAGCATGAGGTTAACGATGATGCT-GTCGAAGA- 269
||||||||||||||||||||||||||||||||||| ||||| | |||| | || | | |
Sbjct 169 ACAAGCAGTATCTAAGTAATAACGTTAAGCATGAGTTTAACAACGATGATGGT-G-ATAT 226
Query 270 ACGAGGGTTAAGTACGAAGGCAGCTAGAGAATGGGGGAAGTCAAAGGTTTTTGCTACTTC 329
|||||| |||||||||||||||||| ||| ||||||| |||||||||||||||||||
Sbjct 227 TTTAGGGTTGAGTACGAAGGCAGCTAGACAATTGGGGAAGGCAAAGGTTTTTGCTACTTC 286
Query 330 AAGTTTCATGCCTTCTTCAGATTTCCAGGAGGCTAAGGCGTTTCCGGGTGCATACCAGTG 389
|| || ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 287 AACTTACATGCCTGCTTCAGATTTCCAGGAGGCTAAGGCGTTTCCGGTTGCATACCAGTG 346
Query 390 GGGATCAGTTTCTGCGGCCAATGTTTTCCGCAGATGCCAATTTGGTGGTGCGTTTCAAAA 449
||||||||||||||||||||| |||||||||||| ||||||| | ||||||||||| ||
Sbjct 347 GGGATCAGTTTCTGCGGCCAACGTTTTCCGCAGAGGCCAATTCAGCGGTGCGTTTCAGAA 406
Query 450 CGCGA-CGCCGCTTTTACTAGGCGGTTCAGTTCCTTTACCAACTCATCCTTCTCTTGTTC 508
||| | |||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 407 CGC-ATCGCCGCTTTTACTAGGAGGATCAGTTCCTTTACCAACTCATCCTTCTCTTGTTC 465
Query 509 CACGAGTGGCTTCCTCCGGATCATCTCCTCAGCTCACAATCTTTTATGGCGGAACTATAA 568
|||||||||||||||| |||||||||||||||||||| ||||||||||| |||||| | |
Sbjct 466 CACGAGTGGCTTCCTCAGGATCATCTCCTCAGCTCACTATCTTTTATGGTGGAACTGTTA 525
Query 569 GCGTCTTTAATGACATATCTCCCGATAAGGCTCAAGCCATCATGTTATGCGCCGGGAACG 628
|||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 526 GCGTCTTTAATGACATATCTCCTAATAAGGCTCAAGCCATCATGTTATGCGCGGGGAACG 585
Query 629 GTTTGAAAGGTGAAACT---G-GAG-A---T--AG---CAA-A-CCGGTTCGAGAAGCTG 673
||||||||||||||||| | ||| | | || ||| | |||||||| |||| ||
Sbjct 586 GTTTGAAAGGTGAAACTGGAGAGAGTAGCTTGAAGAAACAACACCCGGTTCGCGAAGTTG 645
Query 674 AAAGAATGTATGGAAAACAAATCCATAACA---CTGCTGCTACCTCATCAAGCTCTGCCA 730
||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 646 AAAGAGTGTATGGAAAACAAATCCATAACACTTCTGCTGCTGCCTCATCAAGCTCTGCCA 705
Query 731 CTCACACTGATAATTTCTCAAGGTGTAGGGAC-ACACCCGTTGCTGCGACTAATGCAATG 789
||||||||||| || |||||| ||||||||| || ||||||||| ||||||||||||||
Sbjct 706 TTCACACTGATACTTACTCAAGATGTAGGGACAAC-CCCGTTGCTACGACTAATGCAATG 764
Query 790 AGCATGATCGAATCATTCAATGCAGCTCCTCGTAACATGATTCCTTCAG---TCCCTCAA 846
||||||||||||||||||||||||| |||| |||||||||||||||||| | ||||||
Sbjct 765 AGCATGATCGAATCATTCAATGCAGTTCCTGGTAACATGATTCCTTCAGTATTTCCTCAA 824
Query 847 GCTCGGAAAGCATCCTTGGCTCGGTTCTTGGAGAAGCGCAAAGAGAGGCTTATGAGTGCA 906
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 GCTCGGAAAGCATCCTTAGCTCGGTTCTTGGAGAAGCGCAAAGAGAGGCTTATGAGTGCA 884
Query 907 ATGCCATACAAGAAGATGCTTCTTGATTTGTCGACCGGAGAATCCAGTGGAATGAATTAC 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 ATGCCATACAAGAAGATGCTTCTTGATTTGTCGACCGGAGAATCCAGTGGAATGAATTAC 944
Query 967 TCTTCTACTTCTCCTACATAAAACCTACACttttt-tt-tt----tttttttt--ACAAT 1018
||||||||||||||||| ||||||||||||||||| || || |||||||| |||||
Sbjct 945 TCTTCTACTTCTCCTACCTAAAACCTACACTTTTTATTCTTAAGGTTTTTTTTTTACAAT 1004
Query 1019 GGTAATTTGTAATTGTAATCATTAGATTATGATTATATAGTTACCATTTATATTCTTACG 1078
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 GGTAATTTGTAATTTTAATCATTAGATTATGATTATATAGTTACCATTTATATTCTTACG 1064
Query 1079 AGCAGGAGAAGACGTTAGGGCGTCTCTGTATTTGATCATTGTTTGTAATGCTTTGGTCTG 1138
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1065 AGCAGGAGAAGGCGTTAGGGCGTCTCTGTATTTGATCATTGTTTGTAATGCTTTGGTTTA 1124
Query 1139 TTTATTGTAGGATTACATTATAACTTTAAGAACTAACAGATATATGTTTGTCATGGAC-T 1197
|| ||||||||||||| ||| ||| |||||||||||||||||||||||||||||| | |
Sbjct 1125 TT-ATTGTAGGATTACTTTAAAACCTTAAGAACTAACAGATATATGTTTGTCATGTATGT 1183
Query 1198 CATGTCTGTCAAGAATTTAATATCAAATAAAATTCACTAT 1237
| | ||||| ||||||||| ||| |||||||||||||||
Sbjct 1184 C--GACTGTCGAGAATTTAAGATCGAATAAAATTCACTAT 1221
Score = 167 bits (90), Expect = 2e-40
Identities = 97/100 (97%), Gaps = 2/100 (2%)
Strand=Plus/Plus
Query 1 GCAAAGAGTTAAATAAGCCTCTCCAAAAGTGTGTCTGTAACATTACCAAAACGAAACCTT 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCAAAGAGTTAAATAGGCCTCTCCAAAAGTGTGTCTGTAACATTACCAAAACGAAACCTT 60
Query 61 CCTTGTGGATTCCCActtctttcttctgt-tttcttcttc 99
||||||||||||||||||||||||||||| ||| ||||||
Sbjct 61 CCTTGTGGATTCCCACTTCTTTCTTCTGTGTTT-TTCTTC 99
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46586204574
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5