BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70710.1
Length=1751
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926401 jgi|Araly1|926401|scaffold_201962.1 2534 0.0
Ahg335563 jgi|Araly1|335563|fgenesh1_pg.C_scaffold_1002128 1212 0.0
Ahg489943 jgi|Araly1|489943|fgenesh2_kg.6__3077__AT4G11050.1 67.6 3e-10
> Ahg926401 jgi|Araly1|926401|scaffold_201962.1
Length=1522
Score = 2534 bits (1372), Expect = 0.0
Identities = 1469/1517 (97%), Gaps = 2/1517 (0%)
Strand=Plus/Plus
Query 30 AAAAAACAGAGACAAAAGAATGGCGCGAAAATCCCTAATTTTCCCGGTGATTTTGCTCGC 89
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7 AAAAAACAGAG--AAAAGAATGGCGCGAAAATCCCTAATTTTCCCGGTGATTTTGCTCGC 64
Query 90 CGTTCTTCTCTTCTCTCCGCCGATTTACTCCGCCGGTCACGATTACCGCGACGCTCTCCG 149
||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 65 CGTTCTTCTTTTTTCTCCGCCGATTTACTCCGCCGGACACGATTACCGCGACGCTCTCCG 124
Query 150 TAAAAGCATTCTCTTCTTCGAAGGTCAACGTTCCGGTAAACTCCCTCCAGATCAACGCTT 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 TAAAAGCATTCTCTTCTTCGAAGGTCAACGTTCCGGTAAACTCCCTCCAGATCAACGCTT 184
Query 210 AAAATGGCGCCGTGACTCAGCATTACGCGACGGTTCCTCCGCCGGCGTTGACTTATCCGG 269
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 185 AAAATGGCGCCGTGACTCAGCATTACGCGACGGTTCCTCCGCCGGCGTTGATTTATCCGG 244
Query 270 TGGTTACTACGACGCCGGAGACAACATCAAGTTCGGTTTTCCGATGGCGTTCACAACAAC 329
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 245 AGGTTACTACGACGCCGGAGACAACATCAAATTCGGTTTTCCGATGGCCTTCACAACAAC 304
Query 330 GATGCTTTCATGGAGTATAATCGATTTCGGTAAAACCATGGGACCTGAGCTTAGAAACGC 389
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 305 GATGCTTTCATGGAGTATAATCGATTTCGGTAAAACCATGGGACCGGAGCTTAAAAACGC 364
Query 390 CGTGAAAGCTGTTAAATGGGGAACAGATTACCTCCTTAAAGCGACGGCGATTCCCGGAGT 449
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 365 CGTGAAAGCTGTCAAATGGGGAACAGATTACCTCCTAAAAGCGACGGCGATTCCCGGAGT 424
Query 450 AGTCTTCGTCCAAGTCGGAGACGCTTACTCCGATCATAACTGTTGGGAAAGGCCTGAAGA 509
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 425 AGTTTTCGTCCAAGTCGGAGACGCTTACTCCGATCATAACTGTTGGGAAAGACCTGAAGA 484
Query 510 TATGGACACTCTCCGTACTGTTTACAAAATCGATAGAGCTCATCCTGGTTCTGACGTCGC 569
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 TATGGACACACTTCGTACTGTTTACAAAATCGATAGAGCTCATCCTGGTTCTGACGTCGC 544
Query 570 TGGTGAAACCGCAGCCGCTTTAGCCGCCGCTTCAATCGTTTTTAGAAAACGCGATCCTGC 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 545 CGGTGAAACCGCAGCCGCTTTAGCCGCCGCTTCAATCGTTTTTAGAAAACGCGATCCTTC 604
Query 630 TTATTCCAGACTTCTACTTGACCGTGCCACTAGGGTATTCGCGTTTGCTAACAGATATCG 689
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 605 TTATTCCAGACTTCTTCTTGACCGTGCCACTAGAGTATTCGCGTTTGCTAACAGATATCG 664
Query 690 CGGCGCGTATAGTAACAGTCTCTACCACGCGGTTTGTCCTTTTTACTGTGATTTCAACGG 749
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 CGGCGCGTACAGTAACAGTCTCTACCACGCGGTTTGTCCTTTTTACTGTGATTTCAACGG 724
Query 750 TTACCAGGATGAGTTACTGTGGGGAGCGGCATGGCTACACAAAGCCTCGAGGAAACGAGC 809
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 725 TTACCAGGATGAGTTACTGTGGGGAGCGGCGTGGCTACACAAAGCCTCGAGGAAACGAGC 784
Query 810 GTACAGAGAATTCATTGTGAAGAACGAGGTCATTCTTAAGGCTGGAGATACCATTAATGA 869
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 785 GTACAGAGAATTCATTGTGAAGAACGAGGTGATTCTTAAGGCTGGAGATACCATTAATGA 844
Query 870 GTTTGGTTGGGACAATAAGCATGCTGGGATTAATGTCTTAATCTCCAAGGAAGTGTTAAT 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 GTTTGGTTGGGACAATAAGCATGCTGGGATTAATGTCTTAATCTCCAAGGAAGTGTTAAT 904
Query 930 GGGAAAAGCAGAGTATTTTGAGTCTTTCAAGCAGAACGCAGATGGGTTTATCTGTTCTAT 989
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 905 GGGAAAAGCTGAGTATTTTGAGTCTTTCAAGCAAAACGCAGATGGGTTTATCTGTTCTAT 964
Query 990 ATTGCCTGGAATTTCTCACCCCCAAGTCCAATACTCTCGAGGAGGGCTACTAGTGAAGAC 1049
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 965 ATTGCCTGGAATTTCTCACCCTCAAGTCCAATACTCTCGAGGAGGGTTACTAGTGAAGAC 1024
Query 1050 TGGAGGGAGTAACATGCAACATGTAACATCACTATCTTTCCTCCTATTGGCTTACTCTAA 1109
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1025 TGGAGGGAGTAACATGCAACATGTAACATCGCTATCTTTCCTCCTATTGGCTTACTCTAA 1084
Query 1110 TTATCTGAGCCATGCCAAAAAGGTTGTGCCTTGTGGCGAATTAACTGCTTCCCCATCTCT 1169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1085 TTATCTGAGCCATGCCAAAAAGGTTGTGCCTTGTGGCGAATTAACTGCTTCCCCATCTCT 1144
Query 1170 CCTCCGTCAAATCGCCAAGCGTCAGGTGGATTACATTCTCGGAGACAACCCGATGGGACT 1229
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
Sbjct 1145 CCTCCGTCAAATCGCCAAGCGTCAGGTGGATTACATTTTAGGAGACAACCCGATGGGATT 1204
Query 1230 GTCTTACATGGTTGGATACGGTCAAAAGTTTCCACGTAGGATTCATCACCGTGGTAGCTC 1289
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1205 GTCTTACATGGTTGGATACGGTCAAAAGTTTCCACGTAGGATTCATCACCGTGGCAGCTC 1264
Query 1290 GGTTCCTTCGGTTTCAGCCCATCCAAGCCACATAGGGTGCAAAGAAGGCTCTCGCTATTT 1349
|||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 1265 GGTTCCTTCGGTTTCAGCCCATCCGAGCCATATAGGATGCAAAGAAGGCTCTCGCTATTT 1324
Query 1350 CCTAAGCCCAAATCCTAACCCAAACCTTTTGGTTGGTGCTGTAGTCGGTGGACCTAATGT 1409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1325 CCTAAGCCCAAATCCTAACCCAAACCTTTTGGTTGGTGCTGTAGTCGGTGGACCTAATGT 1384
Query 1410 CACTGATGCTTTTCCGGATTCAAGACCTTACTTTCAGCAGTCTGAGCCCACGACTTATAT 1469
||| ||||||||||| |||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 1385 CACCGATGCTTTTCCAGATTCAAGACCTTACTTTCAACAGTCCGAGCCCACGACTTACAT 1444
Query 1470 CAATGCACCACTAGTGGGCCTTCTCGGTTACTTCTCCGCCCATTCTACTTGGCGATGAGG 1529
|||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1445 CAATGCACCACTCGTCGGCCTTCTCGGTTACTTCTCCGCCCATTCTTCTTGGCGATGAGC 1504
Query 1530 GAGGGCCTTATTACTTA 1546
|| || ||||||| |||
Sbjct 1505 GATGGTCTTATTAGTTA 1521
> Ahg335563 jgi|Araly1|335563|fgenesh1_pg.C_scaffold_1002128
Length=1470
Score = 1212 bits (656), Expect = 0.0
Identities = 1223/1493 (82%), Gaps = 54/1493 (4%)
Strand=Plus/Plus
Query 49 ATGGCGCGAAAATCCCTAATTTTC-CCGGTGATTTTGCTCGCCGTT-CTTCT-CTTCTCT 105
|||||| |||| ||||||| | | |||| |||| |||||| |||| ||||| ||| | |
Sbjct 1 ATGGCGGGAAACTCCCTAA-TCGCTCCGGCGATTATGCTCG-CGTTGCTTCTCCTTAT-T 57
Query 106 CCGCC-GATTTACTCCGCCGGTCACGATTACCGCGACGCTCTCCGTAAAAGCATTCTCTT 164
| || || | || ||||||||| || ||||||||||||||||| || ||||| || ||
Sbjct 58 TCACCGGAGAT-CTACGCCGGTCATGACTACCGCGACGCTCTCCGCAAGAGCATCCTTTT 116
Query 165 CTTCGAAGGTCAACGTTCCGGTAAACTCCCTCCAGATCAACG-CTTAAAATGGCGCCGTG 223
||||||||||||||| |||||||| || || ||||||||||| ||| |||||||||||||
Sbjct 117 CTTCGAAGGTCAACGCTCCGGTAAGCTTCCACCAGATCAACGCCTT-AAATGGCGCCGTG 175
Query 224 ACTCAGCATTACGCGACGGTTCCTCCGCCGGCGTTGACTTATCCGGTGGTTACTACGACG 283
|||| || |||||||||||||||||||||||||| || ||| | || || ||||||||||
Sbjct 176 ACTCCGCCTTACGCGACGGTTCCTCCGCCGGCGTGGATTTAACGGGAGGCTACTACGACG 235
Query 284 CCGGAGACAACATCAAGTTCGGTTTTCCGATGGCGTTCACAACAACGATGCTTTCATGGA 343
| ||||| ||| | || ||||| ||||||||||||||||| || || ||| | |||||||
Sbjct 236 CTGGAGATAACGTAAAATTCGGATTTCCGATGGCGTTCACGACGACAATGATGTCATGGA 295
Query 344 GTATAATCGATTTCGGTAAAACCATGGGACCTGAGCTTAG-AAACGCCGTGAAAGCTGTT 402
| | || |||||||||||||| |||||||| |||||| | |||||||||||||||| |
Sbjct 296 GCGTCATAGATTTCGGTAAAACAATGGGACCGGAGCTT-GAAAACGCCGTGAAAGCTATC 354
Query 403 AAATGGGGAACAGATTACCTCCTTAAAGCGACGGC-GATTCCCGGAGTAGTCTTCGTCCA 461
||||||||||||||||| ||| | |||||||| | ||||||||| || ||||| |||||
Sbjct 355 AAATGGGGAACAGATTATCTCATGAAAGCGAC-TCAGATTCCCGGCGTCGTCTTTGTCCA 413
Query 462 AGTCGGAGACGCTTACTCCGATCATAACTGTTGGGAAAGGCCTGAAGATATGGACACTCT 521
||||||||||||||||||||| || || ||||||||| | || || || |||||||| ||
Sbjct 414 AGTCGGAGACGCTTACTCCGACCACAATTGTTGGGAACGTCCCGAGGACATGGACACGCT 473
Query 522 CCGTACTGTTTACAAAATCGATAGAG-CTCATCCTGGTTCTGACGTCGCTGGTGAAACCG 580
|| || ||||| |||||||||| || | ||||||||||| | ||||| || |||||||
Sbjct 474 TCGAACGGTTTATAAAATCGATAAAGAC-CATCCTGGTTCCAAAGTCGCCGGAGAAACCG 532
Query 581 CAGCCGCTTTAGCCGCCGCTTCAATCGT-TTTTAGAAAACGCGATCCTGCT-TATTCCAG 638
||||||| |||||||||| || ||||| ||| | |||||||||||| | | || ||||
Sbjct 533 CAGCCGCACTAGCCGCCGCATCGATCGTGTTTGA-AAAACGCGATCC-GATATACTCCAA 590
Query 639 ACTTCTACTTGACCGTGCCACTAGGGTATTCGCGTTTG-CTAACAGATATCGCGGCGCGT 697
| | || || ||||| || || ||||| || ||||| | | || || || || || ||||
Sbjct 591 AATGCTCCTCGACCGAGCAACAAGGGTGTTTGCGTTCGCCCAAAAG-TACCGAGGAGCGT 649
Query 698 ATAGTAACAGTCTCTACCACGCGGTTTGTCCTTTTTACTGTGATTTCAACGGTTACCAGG 757
| ||| | ||||| ||||| | || |||||||||||||| |||||||||||||| |||
Sbjct 650 ACAGTGATAGTCTTTACCAAGTAGTGTGTCCTTTTTACTGCGATTTCAACGGTTATGAGG 709
Query 758 ATGAGTTACTGTGGGGAGCGGCATGGCTACACAAAGCCTCGAGGAAACGAGCGTACAGAG 817
||||||| || ||||||||||| |||||||||||||| |||| |||||||| ||| ||||
Sbjct 710 ATGAGTTGCTTTGGGGAGCGGCTTGGCTACACAAAGCGTCGAAGAAACGAGTGTATAGAG 769
Query 818 AATTCATTGTGAAGAACGAGGTCATTCTTAAG-GCTGGAGATACCATTAATGAGTTTGGT 876
| ||||||||||||||| | || |||| |||| ||||||||||| || | |||||||||
Sbjct 770 AGTTCATTGTGAAGAACCAAGTTATTC-TAAGAGCTGGAGATACGATCCACGAGTTTGGT 828
Query 877 TGGGACAATAAGCATGCTGGGATTAATGTCTTAATCTCCAAGGAAGTG-T--TAATGGGA 933
||||| ||||| ||||||||||||||||||||||||||||| || || | ||||||||
Sbjct 829 TGGGATAATAAACATGCTGGGATTAATGTCTTAATCTCCAA--AA-TGGTACTAATGGGA 885
Query 934 AAAGCAGAGTATTTT--GAGTCTTTCAAGCAGAACGCAGATGGGTTTATCTGTTCTATAT 991
|||||||| |||||| |||| ||| ||||| ||||| |||| ||||||||||||| |||
Sbjct 886 AAAGCAGATTATTTTCAGAGT-TTT-AAGCAAAACGCTGATGAGTTTATCTGTTCTTTAT 943
Query 992 TGCCTGGAATTTCTCACCCCCAAGTCCAATACTCTCGAGGAGGGCTACTAGTGAAGACTG 1051
||||||||||||||||||| |||||||||||||| | |||||| || ||||||||| ||
Sbjct 944 TGCCTGGAATTTCTCACCCTCAAGTCCAATACTCACAAGGAGGATTATTAGTGAAGAGTG 1003
Query 1052 GAGGGAGTAACATGCAACATGTAACATCACTATC-TTTCCTCCTATTGGCTTACTCTAAT 1110
|||| ||||| ||||| ||||||||||| | || ||| | || | | |||||||||
Sbjct 1004 GAGGAAGTAATATGCAGCATGTAACATCTTTGTCGTTTT-TGTTACTAACATACTCTAAT 1062
Query 1111 TATCTGAGCCATGCCAAAAAGGTTGTGCCTTGTGGCGAATTAACT-GCTTCCCC-ATCTC 1168
|| || || || ||||| ||||| ||||| ||||||||||| | | ||||| || | |||
Sbjct 1063 TACCTAAGTCACGCCAATAAGGTGGTGCCATGTGGCGAATTCA-TAGCTTCTCCTA-CTC 1120
Query 1169 TCCTCCGTCAAATCGCCAAGCGTCAGGTGGATTACATT-CTCGGAGACAACCCGATGGGA 1227
| ||||||||| ||||||||||||||||||| ||| || || ||||| || |||||| |
Sbjct 1121 TTCTCCGTCAAGTCGCCAAGCGTCAGGTGGACTAC-TTACTAGGAGATAATCCGATGAAA 1179
Query 1228 CTGTCTTACATGGTTGGATACGGT-CAAAAGTTTCCAC-GTAGGATTCATCACCGTGGTA 1285
|||| ||||||||||| || ||| | | |||||| | | | |||||| || ||||| |
Sbjct 1180 ATGTCGTACATGGTTGGGTATGGTTCGAG-GTTTCCGCAG-ATGATTCACCATCGTGGCA 1237
Query 1286 GCTCGGTTCCTTCGGTT-TCAGCCCATCCAAGCCACATAGGGTGCAAAGAAGGCTCTCGC 1344
||||||||||||| || | | |||||| | | |||||||||||||| || |||||
Sbjct 1238 GCTCGGTTCCTTCAGTCGTG-GACCATCCTGGTCGTATAGGGTGCAAAGACGGTTCTCGT 1296
Query 1345 TATTTCCTAAGCCCA-AATCCTAACCCAAACCTTT--TGGTTGGTGCTGTAGTCGGTGGA 1401
|| ||||| ||| | |||||||| || || ||| | |||| || || || |||||
Sbjct 1297 TACTTCCTCAGCA-ATAATCCTAATCCTAA--TTTGCTAATTGGCGCCGTCGTTGGTGGG 1353
Query 1402 CCTAATGTCACTGATGCTTTTCCGGATTCAAGACCTTACTTTCAGCAGTCTGAGCCCACG 1461
|||||| ||||||| | |||||| ||||| |||||||||||||||| | |||||||||||
Sbjct 1354 CCTAATATCACTGACGATTTTCCTGATTCGAGACCTTACTTTCAGCTGACTGAGCCCACG 1413
Query 1462 ACTTATATCAATGCACCACTAGTGGGCCTTCTCGGTTACTTCTCCGCCCATTC 1514
||||||||||| ||||| || |||||||||| ||||||||||| ||||||||
Sbjct 1414 ACTTATATCAACGCACCTCTTTTGGGCCTTCTTGGTTACTTCTCGGCCCATTC 1466
> Ahg489943 jgi|Araly1|489943|fgenesh2_kg.6__3077__AT4G11050.1
Length=1884
Score = 67.6 bits (36), Expect = 3e-10
Identities = 78/97 (80%), Gaps = 8/97 (8%)
Strand=Plus/Plus
Query 1192 CAGGTGGATTACATTCTCGGAGACAACCCGATG-G-GACT-GTCTTACATGGTTGGATAC 1248
||||||||||||||||||||||||||||| | | | ||| || | ||||||| ||||||
Sbjct 1153 CAGGTGGATTACATTCTCGGAGACAACCCTA-GAGCGACAAGT-T-ACATGGTCGGATAC 1209
Query 1249 GGTCAAAAGTTTCCACGT-AGGATTCATCACCGTGGT 1284
|| | || | |||||| | | ||||||| ||||||
Sbjct 1210 GGAGAGAACTATCCACGACAAG-TTCATCATCGTGGT 1245
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65705672625
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5