BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G70720.1 Length=797 Score E Sequences producing significant alignments: (Bits) Value Ahg476202 jgi|Araly1|476202|fgenesh2_kg.2__1332__AT1G70720.1 939 0.0 > Ahg476202 jgi|Araly1|476202|fgenesh2_kg.2__1332__AT1G70720.1 Length=718 Score = 939 bits (508), Expect = 0.0 Identities = 597/640 (93%), Gaps = 6/640 (1%) Strand=Plus/Plus Query 24 TAACAATGATGAGACCTACTCTCCTTATACTTCTCTTT-TCCACCTTTCTCCCACAAATC 82 |||||||||||||| ||| ||||||||||||||| ||| ||| || |||| |||| |||| Sbjct 1 TAACAATGATGAGATCTATTCTCCTTATACTTCT-TTTATCCTCCCTTCTTCCACCAATC 59 Query 83 CTCACCGTTGATCCACCACTCCTACCATCCAACGGCTCCGATTTCATCCGTTTGGCCTGC 142 |||||||||||||| ||||||| | |||||||||||||||||||||||||| |||||| Sbjct 60 CTCACCGTTGATCCCCCACTCCCATCATCCAACGGCTCCGATTTCATCCGTACAGCCTGC 119 Query 143 AACACCACACTCTACCCGGACCTTTGCTTCTCCACTCTCTCCTCTTTTGCCAACTCCATC 202 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 AACACCACACTCTACCCGGACCTTTGCTTCTCCACTCTCTCCTCTTTTGCCAACTCCATC 179 Query 203 CAAAATGACTCAAACCGCCTCGCGCGCGTAGCCATCTCCCTCACTCTCCACAACACTCTC 262 ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 180 CAAAATGACTCGAACCGCCTCGCACGCGTAGCCATCTCCCTCACTCTCCACAACACTCTC 239 Query 263 CACCTTCTCTCTTACCTCCAAAACGCTTATAACCGCGACCACCCAACCCCCGTCCTTAGA 322 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 CCCCTTCTCTCTTACCTCCAAAACGCTTATAACCGCGACCACCCAACCCCCGTCCTTAGA 299 Query 323 GACTGCTTCGAGAATCTTAAAGATGCCGTTGACGGTATGAGAGGCTCCATGAAACAGATG 382 ||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||| Sbjct 300 GACTGCTTCGAGAATCTTAAAGATGCCGTCGACGATATGAGAGGCTCGATGAAACAGATG 359 Query 383 AAGGAGCTTGTCTCCGCGTCTGGCTCGATCGAGTCATTTAGGTTCCAGATGAGTAATGTC 442 ||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||| Sbjct 360 AAGGAGCTTGTCTCCGCGTCTGGCTCGGTCGAGTCTTTTAGGTTCCAGATGAGCAATGTC 419 Query 443 AAGACTTGGCTTAGTGCAGCTCTTACTGATGAGTATACTTGTACGGACGGGTTCAAAGAC 502 |||||||||||||| ||||| || ||| | |||||||||||||||||||| ||||||||| Sbjct 420 AAGACTTGGCTTAGCGCAGCCCTCACTAACGAGTATACTTGTACGGACGGATTCAAAGAC 479 Query 503 GTCCACGAAGACGACTCTATCAAAGATGACGTCTGCTCTCGAGTCGATGACGTCAAGAAG 562 ||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||| Sbjct 480 GTCCACGAAGACGGCTCCATCAAAGATGACGTCTGCTCTCGAGTCGATGTCGTCAAGAAG 539 Query 563 CTTACTAGCAATGCGCTGGCTTTAGTTAACCGCTATGCCGACGAGTCAATAATA-A--A- 618 || |||||||||||||| |||||||||||||||||||||||||||||| ||||| | | Sbjct 540 CTGACTAGCAATGCGCTCGCTTTAGTTAACCGCTATGCCGACGAGTCAGTAATACATTAA 599 Query 619 TTAATAATATCTCAGTCATCGATCCTTCGAGTCTTTTGtt 658 |||||||||||| |||||| |||| ||||||||||| ||| Sbjct 600 TTAATAATATCTTAGTCATTGATCGTTCGAGTCTTTCGTT 639 Score = 113 bits (61), Expect = 2e-24 Identities = 78/85 (92%), Gaps = 6/85 (7%) Strand=Plus/Plus Query 718 TCGTTGTTGCATGTAATACTGAAA-ATATATGTGAGTTTTCCTTGGA----ATTATTATT 772 |||||||||||||||||||||||| | ||||||||||||||||||| ||||||||| Sbjct 635 TCGTTGTTGCATGTAATACTGAAACA-ATATGTGAGTTTTCCTTGGTTGTTATTATTATT 693 Query 773 TACTTGGATTTATTTCAGTTTTTGC 797 ||||||||||||||||||||||||| Sbjct 694 TACTTGGATTTATTTCAGTTTTTGC 718 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29430891924 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5