BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70720.1
Length=797
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476202 jgi|Araly1|476202|fgenesh2_kg.2__1332__AT1G70720.1 939 0.0
> Ahg476202 jgi|Araly1|476202|fgenesh2_kg.2__1332__AT1G70720.1
Length=718
Score = 939 bits (508), Expect = 0.0
Identities = 597/640 (93%), Gaps = 6/640 (1%)
Strand=Plus/Plus
Query 24 TAACAATGATGAGACCTACTCTCCTTATACTTCTCTTT-TCCACCTTTCTCCCACAAATC 82
|||||||||||||| ||| ||||||||||||||| ||| ||| || |||| |||| ||||
Sbjct 1 TAACAATGATGAGATCTATTCTCCTTATACTTCT-TTTATCCTCCCTTCTTCCACCAATC 59
Query 83 CTCACCGTTGATCCACCACTCCTACCATCCAACGGCTCCGATTTCATCCGTTTGGCCTGC 142
|||||||||||||| ||||||| | |||||||||||||||||||||||||| ||||||
Sbjct 60 CTCACCGTTGATCCCCCACTCCCATCATCCAACGGCTCCGATTTCATCCGTACAGCCTGC 119
Query 143 AACACCACACTCTACCCGGACCTTTGCTTCTCCACTCTCTCCTCTTTTGCCAACTCCATC 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AACACCACACTCTACCCGGACCTTTGCTTCTCCACTCTCTCCTCTTTTGCCAACTCCATC 179
Query 203 CAAAATGACTCAAACCGCCTCGCGCGCGTAGCCATCTCCCTCACTCTCCACAACACTCTC 262
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 180 CAAAATGACTCGAACCGCCTCGCACGCGTAGCCATCTCCCTCACTCTCCACAACACTCTC 239
Query 263 CACCTTCTCTCTTACCTCCAAAACGCTTATAACCGCGACCACCCAACCCCCGTCCTTAGA 322
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CCCCTTCTCTCTTACCTCCAAAACGCTTATAACCGCGACCACCCAACCCCCGTCCTTAGA 299
Query 323 GACTGCTTCGAGAATCTTAAAGATGCCGTTGACGGTATGAGAGGCTCCATGAAACAGATG 382
||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||
Sbjct 300 GACTGCTTCGAGAATCTTAAAGATGCCGTCGACGATATGAGAGGCTCGATGAAACAGATG 359
Query 383 AAGGAGCTTGTCTCCGCGTCTGGCTCGATCGAGTCATTTAGGTTCCAGATGAGTAATGTC 442
||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||
Sbjct 360 AAGGAGCTTGTCTCCGCGTCTGGCTCGGTCGAGTCTTTTAGGTTCCAGATGAGCAATGTC 419
Query 443 AAGACTTGGCTTAGTGCAGCTCTTACTGATGAGTATACTTGTACGGACGGGTTCAAAGAC 502
|||||||||||||| ||||| || ||| | |||||||||||||||||||| |||||||||
Sbjct 420 AAGACTTGGCTTAGCGCAGCCCTCACTAACGAGTATACTTGTACGGACGGATTCAAAGAC 479
Query 503 GTCCACGAAGACGACTCTATCAAAGATGACGTCTGCTCTCGAGTCGATGACGTCAAGAAG 562
||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 480 GTCCACGAAGACGGCTCCATCAAAGATGACGTCTGCTCTCGAGTCGATGTCGTCAAGAAG 539
Query 563 CTTACTAGCAATGCGCTGGCTTTAGTTAACCGCTATGCCGACGAGTCAATAATA-A--A- 618
|| |||||||||||||| |||||||||||||||||||||||||||||| ||||| | |
Sbjct 540 CTGACTAGCAATGCGCTCGCTTTAGTTAACCGCTATGCCGACGAGTCAGTAATACATTAA 599
Query 619 TTAATAATATCTCAGTCATCGATCCTTCGAGTCTTTTGtt 658
|||||||||||| |||||| |||| ||||||||||| |||
Sbjct 600 TTAATAATATCTTAGTCATTGATCGTTCGAGTCTTTCGTT 639
Score = 113 bits (61), Expect = 2e-24
Identities = 78/85 (92%), Gaps = 6/85 (7%)
Strand=Plus/Plus
Query 718 TCGTTGTTGCATGTAATACTGAAA-ATATATGTGAGTTTTCCTTGGA----ATTATTATT 772
|||||||||||||||||||||||| | ||||||||||||||||||| |||||||||
Sbjct 635 TCGTTGTTGCATGTAATACTGAAACA-ATATGTGAGTTTTCCTTGGTTGTTATTATTATT 693
Query 773 TACTTGGATTTATTTCAGTTTTTGC 797
|||||||||||||||||||||||||
Sbjct 694 TACTTGGATTTATTTCAGTTTTTGC 718
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29430891924
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5