BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70740.1
Length=1753
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476205 jgi|Araly1|476205|fgenesh2_kg.2__1335__AT1G70740.1 2135 0.0
> Ahg476205 jgi|Araly1|476205|fgenesh2_kg.2__1335__AT1G70740.1
Length=1722
Score = 2135 bits (1156), Expect = 0.0
Identities = 1281/1341 (96%), Gaps = 9/1341 (1%)
Strand=Plus/Plus
Query 404 AGTTTTCCCATTTCAAGTTTTAGTTTCCGCTACCAAAGATTTTCACCCGACCCATAAACT 463
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 386 AGTTTTCCCATTTCAAGTTTTAGTTTCCGCTACTAAAGATTTTCACCCGACCCATAAACT 445
Query 464 CGGTGAAGGTGG-TTTCGGTCCCGTCTTCAAGGGAAGATTACCTGACGGGAGAGACATAG 522
|||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 446 CGGTGAAGGTGGATTT-GGTCCCGTCTTTAAGGGAAGATTACCTGACGGGAGAGACATAG 504
Query 523 CAGTGAAGAAGCTATCTCAGGTTTCAAGGCAAGGCAAAAACGAGTTTGTGAACGAGGCTA 582
|||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 505 CAGTGAAGAAGCTATCACAGGTTTCAAGGCAAGGTAAAAACGAGTTTGTTAACGAGGCTA 564
Query 583 AGTTGTTGGCTAAAGTTCAGCATCGCAATGTTGTTAATCTTTGGGGTTATTGTACACATG 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 565 AGTTGTTGGCTAAAGTTCAGCATCGCAATGTTGTTAATCTTTGGGGTTATTGTACACATG 624
Query 643 GAGATGATAAGCTCTTGGTTTATGAGTATGTCGTTAATGAGAGCCTCGACAAGGTCCTCT 702
|||||||||| |||||||| |||||||||||||| || |||||||||||||||||||| |
Sbjct 625 GAGATGATAAACTCTTGGTCTATGAGTATGTCGTAAACGAGAGCCTCGACAAGGTCCTAT 684
Query 703 TCAAATCCAACAGAAAATCGGAGATAGATTGGAAGCAGAGGTTTGAGATCATAACAGGCA 762
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 685 TCAAATCCAACAGAAAATCGGAGATAGATTGGAAGCAGAGGTTTGAGATAATAACAGGCA 744
Query 763 TTGCTCGAGGACTGCTCTATCTACATGAAGACGCGCCAAACTGCATCATCCACAGGGATA 822
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 745 TTGCTCGAGGACTGCTCTATCTACATGAAGACGCACCAAACTGCATCATCCACAGGGACA 804
Query 823 TTAAGGCTGGCAATATTTTGCTGGATGAAAAATGGGTTCCTAAGATTGCAGATTTTGGGA 882
|||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 805 TTAAGGCTGGTAATATTTTGTTGGATGAAAAATGGGTTCCTAAGATTGCTGATTTTGGGA 864
Query 883 TGGCTAGACTCTATCAGGAAGATGTAACACATGTCAACACTCGTGTTGCAGGAACCAATG 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 865 TGGCTAGACTCTATCAGGAAGATGTAACACATGTCAACACTCGTGTTGCAGGAACCAATG 924
Query 943 GTTATATGGCGCCAGAGTACGTAATGCACGGGGTTCTATCGGTAAAGGCAGACGTATTCA 1002
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 925 GTTATATGGCGCCAGAGTACGTAATGCACGGGGTTCTGTCGGTAAAGGCAGACGTATTCA 984
Query 1003 GCTTTGGGGTTTTGGTTCTGGAGCTCGTAAGTGGACAGAAGAACTCGAGTTTTAGCATGA 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 985 GCTTTGGGGTTTTGGTTCTGGAGCTCGTAAGTGGACAGAAGAACTCGAGTTTTAGTATGA 1044
Query 1063 GACACCCTGACCAGACTCTTCTTGAATGGGCATTTAAGTTGTACAAGAAAGGCCGGACCA 1122
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1045 GACACCCTGACCAGACTCTTCTTGAATGGGCATATAAGTTGTACAAGAAAGGCAGGACCA 1104
Query 1123 TGGAGATACTAGACCAAGATATAGCAGCTTCAGCTGATCCAGATCAAGTCAAACTCTGTG 1182
||||||||||||||| |||||||||| ||||||||||||| |||||||||||||| || |
Sbjct 1105 TGGAGATACTAGACCCAGATATAGCATCTTCAGCTGATCCGGATCAAGTCAAACTTTGCG 1164
Query 1183 TACAGATCGGACTACTCTGCGTTCAAGGCGATCCGCATCAAAGACCGAGCATGAGACGGG 1242
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1165 TACAGATCGGACTACTCTGCGTTCAAGGCGATCCGCATCAAAGACCGTCCATGAGACGAG 1224
Query 1243 TATCTCTACTTCTCTCTAGAAAACCAGGACATCTAGAAGAACCGGATCATCCTGGTGTCC 1302
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1225 TATCTCTACTTCTCTCGAGAAAACCGGGACATCTAGAAGAACCGGATCATCCTGGTGTCC 1284
Query 1303 CGGGATCTAGATACCGTCGGCGAACACAACGTCCTTCAGGAGCAGCATCACTTGGAACAT 1362
| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1285 CTGGATCTAGATACCGTCGTCGAACACATCGTCCTTCAGGAGCAGCATCACTTGGAACAT 1344
Query 1363 TGTCGACCACTGGTTCCAGCACAGATTCTTTCGGTTCAAACCTGAACACAAACACGGGAA 1422
||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||| ||||
Sbjct 1345 TGTCGACCACTGGTTCCAGTACAGATTCTTTCGGTTCGAACTTGAACACAAACACCGGAA 1404
Query 1423 CTGGTGTTAGAGGTACCCCCGCATCTTCTAAAGCTTCAACTCGGAGTAATGCCACTAGAA 1482
| |||| ||||| ||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 1405 CCGGTGGTAGAGTTACCCCCGCATCTTCTAAAACTTCGACTCGGAGTAATGCCACTAGAA 1464
Query 1483 GTGCTGGTCAGAGCTCTAGCTCAGACCCTCACGGGAAACGAC-ATATGAGTTATTGAAGT 1541
||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||
Sbjct 1465 GTGCTGGTCAGAGCTCTAGCTCAGATCCTCACGGGAAACGACCA-ATGAGTTATTGAAGT 1523
Query 1542 ACATAAAATCTGGTCATAGGTGATTGTAAATAGCGAGCTGCatatataatatttgtttca 1601
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1524 ACATAAAATCTGGTCACAGGTGATTGTAAATAGCGAGCTGCATATATAATATTTGGTTCA 1583
Query 1602 taatttatttaattttgcttttgaaaagtaaattaatttatttttttgACTGCAGTAGTG 1661
|||||||||| ||||||||||||||||||||||||||| | |||| |||||| ||||||
Sbjct 1584 CAATTTATTTATTTTTGCTTTTGAAAAGTAAATTAATTT-TGTTTT-GACTGCTGTAGTG 1641
Query 1662 ATTTAGTTTTGTAGTATGATTTGTTATATT-AGCGGGAAAAA-A-TTATGATTCATTTGT 1718
|||||||||||||||||||||||||||||| || || ||||| | |||||||||||||||
Sbjct 1642 ATTTAGTTTTGTAGTATGATTTGTTATATTTAGAGGAAAAAAGAATTATGATTCATTTGT 1701
Query 1719 TACATTTGTATATTAGAATAA 1739
|||||||||||||||||||||
Sbjct 1702 TACATTTGTATATTAGAATAA 1722
Score = 335 bits (181), Expect = 7e-91
Identities = 329/393 (84%), Gaps = 39/393 (10%)
Strand=Plus/Plus
Query 1 ACTTTCGTTTCAAATCTAAATCCTTCCTCGCATAAACTCTTCCCTGAATC-A-AAAA--C 56
|||||||| || ||||||||||||||||||||||||||||||| |||||| | |||| |
Sbjct 1 ACTTTCGTCTCTAATCTAAATCCTTCCTCGCATAAACTCTTCCTTGAATCAACAAAATTC 60
Query 57 ---C-CATTCTAATAAAAACAAAGACGATCTCAAACACG---------CTTCTTCTTCTT 103
| | ||||| ||||||||||||| ||| |||||||| ||||||||||||
Sbjct 61 ATTCTC-TTCTAGTAAAAACAAAGACAATCACAAACACGCTTCTTCTTCTTCTTCTTCTT 119
Query 104 -C-C-TC--ATTCCTCAATCATCCCTAAGA-CG---TCACCTCACTTAAACCCAATCCAA 154
| | || |||||||||||||||||||| || | |||| |||| ||||||||| ||
Sbjct 120 CCTCTTCGTCTTCCTCAATCATCCCTAAGACCGACATAACCTGACTTTAACCCAATCTAA 179
Query 155 CGCCGCCGAACCAAAATCAACTTC---TTCGGTTCTTCCCCAATTCAATACTACTTTCTG 211
|||||||||| ||||||| |||| | | ||||||||||||||||| ||||||||||
Sbjct 180 CGCCGCCGAATCAAAATC-CCTTCAAATCCACTTCTTCCCCAATTCAATTCTACTTTCTG 238
Query 212 GGTCGTCG-TTAAA-TCCCTAAATCTCTCTCTGTTGTTA-CCTTCCCATGGGATGGTCAC 268
|||||||| ||||| | ||||| |||||||||| || | || |||||||||||||||
Sbjct 239 GGTCGTCGTTTAAATTTTCTAAA--TCTCTCTGTT-ATAGCTTTTCCATGGGATGGTCAC 295
Query 269 TAAGAACTCTCATAAGAGCAATC-TGGGCATGACAAAGTCCATGAATTTCTTTCAGAACA 327
|||||| ||||| |||||||| | |||||||||||||||||||||||||||||||||| |
Sbjct 296 TAAGAATTCTCAAAAGAGCAA-CTTGGGCATGACAAAGTCCATGAATTTCTTTCAGAATA 354
Query 328 TCATTAAACCTTTCAAACGCAGCTCCAATCGAG 360
|||||||||||||||||||||||||||||||||
Sbjct 355 TCATTAAACCTTTCAAACGCAGCTCCAATCGAG 387
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65781853115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5