BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70750.1
Length=2957
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926406 jgi|Araly1|926406|scaffold_201967.1 2401 0.0
Ahg941170 jgi|Araly1|941170|scaffold_601714.1 143 8e-33
> Ahg926406 jgi|Araly1|926406|scaffold_201967.1
Length=2317
Score = 2401 bits (1300), Expect = 0.0
Identities = 1593/1730 (92%), Gaps = 38/1730 (2%)
Strand=Plus/Plus
Query 609 TGAAGATGATGATGTTGATGAGGAGTTTTCATGCTATGTATCAAGCTTCGATTGTAAGAA 668
||| |||||||| | || ||||||||||| |||||||||||||| ||||| ||||| |
Sbjct 593 TGATGATGATGAGGAGGAGGAGGAGTTTTCGTGCTATGTATCAAGTTTCGACTGTAATAG 652
Query 669 CAAAGAAATTGCAACAGAGAAGGAAGAAGAAAACAGAGTGGATCTACCTATAGAGGTGGA 728
||||||||||||| |||||||||||||||| |||| ||||||||| |||||||||| |
Sbjct 653 CAAAGAAATTGCAGCAGAGAAGGAAGAAGACAACAAAGTGGATCTGGCTATAGAGGTTAA 712
Query 729 AACTGCAGAATCAGCTCCGAAAAACCTCGAGTTCTATATTGATGAAGAAGACTGTCATTT 788
||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||
Sbjct 713 AACTGCAGAATCAGCGCCTAAAAACCTTGAGTTCTATATTGATGAAGAAGACTGTCATTT 772
Query 789 GATTCCAGTTGAATTCTATAAACCGAGTGAAGAAGTTCGAGAGATTTCCGACATTAACGG 848
|||||||||||||||||| |||| ||| ||||||||||||||||||||||| |||||||
Sbjct 773 GATTCCAGTTGAATTCTACAAACAGAGCGAAGAAGTTCGAGAGATTTCCGATGTTAACGG 832
Query 849 AGATTTTATCCTCGATTTCGGCGTTGAGCATGATTTCACGGCGGCGGCGGAGACGGAGGA 908
||||||||| ||||||||||||||||||| ||||||||| ||||||| | || |||||
Sbjct 833 AGATTTTATACTCGATTTCGGCGTTGAGCCTGATTTCACAGCGGCGG-AG-GA-GGAGGG 889
Query 909 AATCTCCGACTTTGCTTCGCCGGGTGAATCGAAACCGGAGGATGCAGAGACGAATCTAGT 968
|||||||| |||||||||||||| ||| ||||||||||| ||||| | |||||||||||
Sbjct 890 AATCTCCGCCTTTGCTTCGCCGGATGATTCGAAACCGGACGATGCGGGGACGAATCTAGG 949
Query 969 TGCTTCG---GA--A---A-TG-----G-AAAACGACGACGAAGA-A-ACA-GACGCAGA 1010
||||||| || | | || | |||||||||||||||| | | | ||||| ||
Sbjct 950 TGCTTCGTCAGATGATTTAGTGCAAATGCAAAACGACGACGAAGATACAGACGACGCTGA 1009
Query 1011 GGTTTCTATAGGTACAGAGATTCCTGATCATGAGCAAATCGGAGATATTCCTTCTCACCA 1070
|||||||||||| ||||| |||||||||||||||||||||||||| |||||||| |||||
Sbjct 1010 GGTTTCTATAGGCACAGAAATTCCTGATCATGAGCAAATCGGAGAGATTCCTTCGCACCA 1069
Query 1071 GCTCATTCCTCACCACGATGACGATGATCATGAGGAGGAAACGTTGGAGTTCAAAACAGT 1130
|||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1070 ACTCATTCCTCACGACGATGACGATGATCATGAGGAGGATATGTTGGAGTTCAAAACAGT 1129
Query 1131 AACGATTGAAACCAAG-ATGCCAGTCTTAAACATCAACGAAGAGCGGATTTTAGAAGCTC 1189
|||||||||||| || ||||| ||||||||| ||||||||||||||||||||||| |||
Sbjct 1130 TACGATTGAAACC-AGAATGCCCGTCTTAAACGTCAACGAAGAGCGGATTTTAGAAACTC 1188
Query 1190 AAGGCTCGATGGAAAGCTCGCATAGTAGTCTACATAACGCTATGTTTCACTTAGAGCAAA 1249
||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||
Sbjct 1189 AAGGCTCGATGGAAAGCTCGC--A-TAGTCTACATAACGCTATGTTTCACTTAGAGCGAA 1245
Query 1250 GAGTAT-CTGTTGATGGTATTGAATGTCCTGAAGGAGTACTCACTGTTGATAAGTTGAAG 1308
|||||| || |||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1246 GAGTATCCT-TTGACGGTATTGAATGTCCTGAAGGAGTACTCACCGTGGATAAGTTGAAG 1304
Query 1309 TTTGAGTTACAAGAAGAGAGAAAAGCACTTCACGCGTTATACGAGGAGCTGGAGGTAGAG 1368
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1305 TTGGAGTTACAAGAAGAGAGAAAAGCACTTAACGCGTTATACGAGGAGCTGGAGGTAGAG 1364
Query 1369 AGGAATGCGTCTGCTGTTGCTGCCAGTGAAACAATGGCGATGATCAATAGGTTGCATGAG 1428
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 AGGAGTGCGTCTGCGGTTGCTGCCAGTGAAACAATGGCGATGATCAATAGGTTGCATGAG 1424
Query 1429 GAGAAAGCTGCGATGCAGATGGAAGCGTTGCAGTATCAGAGAATGATGGAGGAGCAAGCT 1488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1425 GAGAAAGCTGCGATGCAGATGGAAGCGTTGCAGTATCAGAGAATGATGGAGGAGCAAGCT 1484
Query 1489 GAGTTTGATCAAGAAGCTTTGCAGTTGTTGAATGAGCTTATGGTGAATAGAGAGAAGGAG 1548
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1485 GAGTTTGATCAAGAAGCCTTGCAGTTGTTGAATGAGCTTATGGTGAATCGAGAGAAGGAG 1544
Query 1549 AATGCTGAGCTTGAGAAGGAGCTAGAGGTGTATAGAAAGAGAATGGAGGAGTATGAAGCT 1608
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1545 AATGTTGAGCTAGAGAAGGAGCTAGAGGTGTATAGAAAGAGAATGGAGGAGTATGAAGCT 1604
Query 1609 AAAGAGAAAATGGGGATGTTGAGGAGGAGATTGAGAGATTCCTCTGTTGATTCGTATAGA 1668
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1605 AAAGAGAAAATGGGGATGTTGAGGAGGAGAATCAGAGATTCCTCTGTTGATTCGTATAGA 1664
Query 1669 AATAATGGCGATTCTGATGAGAATAGCAATGGAGAGTTACAGTT-TAAGAACGTTGAAGG 1727
|||||||||||||| |||||||||| ||||||||||||||| | |||||| ||||||||
Sbjct 1665 AATAATGGCGATTCAGATGAGAATAACAATGGAGAGTTACA-TCATAAGAATGTTGAAGG 1723
Query 1728 GGTTACGGATTGGAAATATAGAGAGAATGAGATGGAGAATACGCCGGTGGATGTTGTACT 1787
||||||||||||||||||| |||||||||||||||||| |||||||| |||||||| ||
Sbjct 1724 AGTTACGGATTGGAAATATATAGAGAATGAGATGGAGAACACGCCGGTTGATGTTGTTCT 1783
Query 1788 TCGTCTTGATGAGTGTTTAGATGATTATGATGGAGAGAGGCTTTCGATTCTTGGGAGATT 1847
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1784 TCGTCTTGATGAGTGTTTAGATGATTATGACGGAGAGAGGCTTTCGATTCTTGGGAGATT 1843
Query 1848 GAAGTTTCTTGAAGAGAAACTCACAGATCTTAATAACGAAGAGGACGACGAGGAGGAGGC 1907
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1844 GAAGTTTCTTGAAGAGAAACTCACAGATCTCAATAACGAAGAGGACGACGAGGAGGAAGC 1903
Query 1908 TAAAACGTTTGAGAGTAATGGTAGCATCAATGGAAATGAGCATATTCATGGCAAAGAAAC 1967
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 1904 TAAAACGTTTGAGAATAATGGTAGCATCAATGGAAATGGGCATATTCATGGCAAGGAAAC 1963
Query 1968 AAACGGGAAGCACAGAGTTATCAAGTCAAAGAGATTACTTCCCCTGTTTGATGCGGTCGA 2027
|||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 1964 AAACGGAAAGCACAGAGTCATCAAGTCAAAGAGACTACTTCCCCTGTTTGATGCGGTCGA 2023
Query 2028 TGGAGAGATGGAAAACGGGTTA-AGTAACGGAAACCATCACGAAAACGGGTTTGATGATT 2086
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
Sbjct 2024 TGGAGAGATGGAAAACGGGTTAGA-TAACGGAAACCATCACGAAAACGGGTTTGATGAAT 2082
Query 2087 CGGAGAAGGGTGAGAATGTGACGATAGAAGAAGAAGTGGATGAGCTTTACGAGAGGTTAG 2146
| ||||| |||| || |||||||||||||||||||||||||||||| ||||| ||| |||
Sbjct 2083 CAGAGAATGGTGCGATTGTGACGATAGAAGAAGAAGTGGATGAGCTATACGAAAGGCTAG 2142
Query 2147 AAGCTCTAGAGGCAGATAGAGAGTTCTTAAGACATTGTGTTGGTTCATTGAAAAAAGGAG 2206
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 2143 AAGCTCTAGAGGCAGATAGAGAGTTCTTGAGGCATTGTGTTGGTTCATTGAAAAAAGGAG 2202
Query 2207 ACAAAGGTGTACATCTCCTCCATGAGATTCTGCAACATCTT-CGTGATCTAAGGAATATC 2265
||||||||||||||||||||||||||||||| | |||| || ||||||||||||||||||
Sbjct 2203 ACAAAGGTGTACATCTCCTCCATGAGATTCTACGACAT-TTACGTGATCTAAGGAATATC 2261
Query 2266 GATCTTACTCGCGTCAGAGAAAACGGAGACAT--GAGT-TTAT-GAGTTT 2311
||||||| |||||||| |||||| |||||||| |||| || | ||||||
Sbjct 2262 GATCTTATTCGCGTCAAAGAAAATGGAGACATATGAGTGTTTTTGAGTTT 2311
Score = 545 bits (295), Expect = 5e-154
Identities = 437/499 (88%), Gaps = 35/499 (7%)
Strand=Plus/Plus
Query 38 AGCTTTCTTTATCGTCGTCTATGGCGGCTAACAAATTCGCGACTCTGATTCATCGGAAAA 97
||||||||| ||||||||| ||||||||||||||||||||||| |||||||| |||||||
Sbjct 1 AGCTTTCTTCATCGTCGTCCATGGCGGCTAACAAATTCGCGACACTGATTCACCGGAAAA 60
Query 98 CAAACCGAATCACTTTAATCCTCGTATACGCTTTTCTCGAATGGTCACTCATTTTCTTCA 157
|||||||||||||| |||| |||||||||||||| ||||||||||||||||| |||||||
Sbjct 61 CAAACCGAATCACTCTAATTCTCGTATACGCTTTCCTCGAATGGTCACTCATCTTCTTCA 120
Query 158 TT-TTGCTCAACTCTCTCTTTTCTTATTTCATACTCAGATTCGCTGATTATTTCGGTCTT 216
|| || |||||||||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 121 TTCTT-CTCAACTCTCTCTTCTCATATTTCATCCTCAGATTCGCTGATTATTTCGGTCTT 179
Query 217 AAACGTCCTTGTCTCTTCTGCTCTAGACTCGATCGTTTCTTCGATGCTTCTGGTAAATCT 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AAACGTCCTTGTCTCTTCTGCTCTAGACTCGATCGTTTCTTCGATGCTTCTGGTAAATCT 239
Query 277 CCTTCTCATCGAGATCTTCTCTGCGATGATCATGCTCTCCA-ATTACATTCAAAA-C-CT 333
||||||||| |||||||||||||||||||||||||||| | ||| | ||||| | |
Sbjct 240 CCTTCTCATAAAGATCTTCTCTGCGATGATCATGCTCTCGAGATT---T-CAAAATCACA 295
Query 334 GTTGAAGAATCTAATTGTGGTTTCGGAGAATTTCACAATGATTTGGTTCATC---GT-G- 388
|| || || || || | | ||||| ||||||||| |||||||||| || |
Sbjct 296 -TTCAA-AACCT----GT--T---GAAGAATCTCACAATGAATTGGTTCATCATCGTCGT 344
Query 389 -GTTGTTGCGTAGAGAAGATAAGTTCGTCACTAT---GT-G--CTCCGAT--T-GAGTCT 438
||||||||||||||||||||||||| ||||||| || | ||||||| | ||||||
Sbjct 345 TGTTGTTGCGTAGAGAAGATAAGTTCTTCACTATTTTGTTGTGCTCCGATAATTGAGTCT 404
Query 439 GACTTTGGGAATTTAGATTATCCAATTGGAGATGAAGGTCAGATTTACAATGGTCTTAAG 498
|| |||||| |||||| |||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct 405 GATTTTGGGGATTTAGGTTATCCGATTGGTGATGAAGGTCAAATTTACAATGGTCTTAAG 464
Query 499 TTTCCTCGATCGATCTTCG 517
|||||||||||||||||||
Sbjct 465 TTTCCTCGATCGATCTTCG 483
> Ahg941170 jgi|Araly1|941170|scaffold_601714.1
Length=2107
Score = 143 bits (77), Expect = 8e-33
Identities = 130/155 (84%), Gaps = 6/155 (4%)
Strand=Plus/Plus
Query 1399 ACAATGGCGATGATCAATAGGTTGCATGAGGAGAAAGCTGCGA-TGCAGATGGAAGCGTT 1457
|||||||||||||||| || | || || |||||||| | | | || |||||||||||
Sbjct 1209 ACAATGGCGATGATCACGAGACTACAAGAAGAGAAAGC-GAAAGTTCAAATGGAAGCGTT 1267
Query 1458 GCAGTATCAGAGAATGATGGAGGAGCAAGCTGAGTTTGATCAAGAAGCTTTGCAGTTGTT 1517
|||||||||||||||||||||||| ||||| |||| |||||||||||| |||||| ||||
Sbjct 1268 GCAGTATCAGAGAATGATGGAGGAACAAGCCGAGTATGATCAAGAAGCCTTGCAGCTGTT 1327
Query 1518 GAATGAGCTT-ATGGTGAATA-GAGAGAAGGAGAA 1550
|||| | || |||||||| | ||||||| |||||
Sbjct 1328 GAATCAT-TTGATGGTGAA-ACGAGAGAAAGAGAA 1360
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111642508095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5