BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70782.1
Length=1136
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926409 jgi|Araly1|926409|scaffold_201970.1 728 0.0
Ahg926410 jgi|Araly1|926410|scaffold_201971.1 309 3e-83
Ahg921353 jgi|Araly1|921353|scaffold_102634.1 191 1e-47
> Ahg926409 jgi|Araly1|926409|scaffold_201970.1
Length=463
Score = 728 bits (394), Expect = 0.0
Identities = 434/453 (96%), Gaps = 3/453 (1%)
Strand=Plus/Plus
Query 410 TTT-CGAAGATGTTGCTCTACAACAAGCAGAAGAAGAACCAAAACGCTAAAGGGAATAGG 468
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 12 TTTACGAAGATGTTGCTCTACAACAAGCAGAAGAAGAACCAAAACGCTAAAGGGAATAGA 71
Query 469 ATTCTCATTAGCGTTACGGTTTTGGGTAGTGCCGGTCCGATCCGGTTTGTTGCTTATGAG 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 72 ATTCTCATTAGCGTTACGGTTTTGGGTAGTGCCGGTCCGATCCGGTTTGTTGCTTTTGAG 131
Query 529 GATGATCTTGTTGCCTCTGTTATCGATACTGCTCTTAAAGGTTACGCTCGTGAAGGTCGT 588
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 132 GATGATCTTGTTGCCTCTGTTATCGATACTGCTCTTAAATGTTACGCTCGTGAAGGTCGT 191
Query 589 CTTCCTCTTCTTGGATCTGATTTCAATGATTTTCTTCTCTATTGTCCTATGGTTGGACCT 648
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 192 CTTCCACTTCTTGGATCTGATTTCAATGATTTTCTTCTTTATTGTCCTATGGTTGGACCT 251
Query 649 GAAGCTTTAAGCACATGGGATGCAATTGGATCTCTTGGAGCGAGGAACTTTATGCTCTGT 708
|||||||||||||||||| ||||||||||||| |||||||| |||||||||||| | |||
Sbjct 252 GAAGCTTTAAGCACATGGAATGCAATTGGATCGCTTGGAGCAAGGAACTTTATGTTGTGT 311
Query 709 AGGAAACCAGAGGAGAAGAAGGTTGAGGAAAGTAATGGAAGATCTGACTCTACCATTAAT 768
||||||||||| |||||||| ||||| |||||||||||||||||| ||||||||||||||
Sbjct 312 AGGAAACCAGAAGAGAAGAAAGTTGATGAAAGTAATGGAAGATCTAACTCTACCATTAAT 371
Query 769 GGTGCAAGAAAAGGTGGAAGCTTGAAGGCTTGGATCAACAAATCCTTCAATCTCAAAGTC 828
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 GGAGCAAGAAAAGGTGGAAGCTTGAAGGCTTGGATCAACAAATCCTTCAATCTCAAAGTC 431
Query 829 TCAAGCCATTAAGATTAAT-TTTCTTCTCTTTT 860
|||||||||||||||| | |||||||||||||
Sbjct 432 CCAAGCCATTAAGATTA-TGTTTCTTCTCTTTT 463
> Ahg926410 jgi|Araly1|926410|scaffold_201971.1
Length=193
Score = 309 bits (167), Expect = 3e-83
Identities = 181/187 (97%), Gaps = 3/187 (2%)
Strand=Plus/Plus
Query 131 GTGTGAATCGTTTGTGAATGGTGGAAACTAATCCGATCGGTGGTAAGTTTACGCTCTCCC 190
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 4 GTGTGAATCGTTTGTGAATGGTGGAAACTAATCCGATCGGTGGTAAGTTTTCGCTCTCCC 63
Query 191 TTTCCATCAAAAGGGCGAGC-TTTTCTCTTCCTCTCTCGACATCCTCTGTTTTCGCTTTC 249
|||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||
Sbjct 64 TTTCCATCAAAAGGGCGAGCTTTTTC-CTTCCTCTCTTGACATCCTCTGTTTTCGCTTTC 122
Query 250 GGATCTTGCAAAGAAGGCTGGTACTTTCGCTGCCTTGGCCTCGACCCGTGAACGATTCGC 309
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 123 GGATCTTGCAAAGAAGGCTGGTACTTTCGCTGCCTTGGCCTCGACCCGTGAACGATTCAC 182
Query 310 CCCTAAA 316
||| |||
Sbjct 183 CCC-AAA 188
> Ahg921353 jgi|Araly1|921353|scaffold_102634.1
Length=197
Score = 191 bits (103), Expect = 1e-47
Identities = 156/180 (87%), Gaps = 10/180 (6%)
Strand=Plus/Plus
Query 127 CTCCGTGTGAATCGTTTGTGAATGGTGGAAACTAATCCGATCGGTGGTAAGT-TTACGCT 185
||||| ||| | ||||||||||||||||||||||||||||| |||| ||| | ||| |||
Sbjct 4 CTCCG-GTG-A-CGTTTGTGAATGGTGGAAACTAATCCGATAGGTGATAA-TCTTAAGCT 59
Query 186 CTCCCTTTCCATCAA-AAGGGCGAGCTTTT-C-TCTTCC-TCTCTCGACATCCTCTGTTT 241
| ||||||| | ||| |||||||||||||| | || ||| |||||| || ||||||||
Sbjct 60 CACCCTTTCAA-CAACAAGGGCGAGCTTTTACATCATCCCTCTCTCTTCAGACTCTGTTT 118
Query 242 TCGCTTTCGGATCTTGCAAAGAAGGCTGGTACTTTCGCTGCCTTGGCCTCGACCCGTGAA 301
|||||||||| ||||||||||||||||||||||| || ||| ||||||||||||||||||
Sbjct 119 TCGCTTTCGGTTCTTGCAAAGAAGGCTGGTACTTCCGTTGCATTGGCCTCGACCCGTGAA 178
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42354560787
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5