BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70790.2
Length=872
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476210 jgi|Araly1|476210|fgenesh2_kg.2__1340__AT1G70790.2 1435 0.0
> Ahg476210 jgi|Araly1|476210|fgenesh2_kg.2__1340__AT1G70790.2
Length=858
Score = 1435 bits (777), Expect = 0.0
Identities = 833/859 (97%), Gaps = 7/859 (1%)
Strand=Plus/Plus
Query 20 CGGTTGTCCGCAAACAACGGATAGATCTGTCGATGTTTGTTTTTGGAACTCCGCGTTGAA 79
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CGGTTGTCCGTAAACAACGGATAGATCTGTCGATGTTTGTTTTTGGAACTCCGCGTTGAA 60
Query 80 TCAGCGTCGATGTTTCTCCAATGGAAGATAAACCATTAGGGATTCTCAGGGTTCATGTCA 139
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 TCAGCGTCGATGTTTCTCCAATGGAAGATAAACCATTAGGGATTCTCAGAGTTCATGTCA 120
Query 140 AAAGAGGGATTAATCTTGCTATTCGTGATGCCACCACCAGTGATCCTTATGTTGTTATCA 199
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AACGAGGGATTAATCTTGCTATTCGTGATGCCACCACCAGTGATCCTTATGTTGTTATCA 180
Query 200 CATTGGCTAATCAGAAACTGAAGACGCGTGTGATTAATAATAACTGTAATCCAGTGTGGA 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CATTGGCTAATCAGAAACTGAAGACGCGTGTGATTAATAATAACTGTAATCCAGTGTGGA 240
Query 260 ACGAACAACTGACCCTTTCCATCAAAGATGTGAATGATCCTATCCGTCTGACGGTGTTTG 319
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 241 ATGAACAACTGACCCTTTCCATCAAAGATGTGAATGATCCAATCCGTCTGACGGTGTTTG 300
Query 320 ATAAAGATAGATTCTCGGGAGATGACAAAATGGGTGATGCAGAAATAGACTTTAGGCCGT 379
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATAAAGACAGATTCTCGGGAGATGACAAAATGGGTGATGCAGAAATAGACTTTAGGCCGT 360
Query 380 TCCTAGAAGCGCATCAAATGGAGTTAGATTTCCAGAAGCTCCCCAATGGTTGTGCAATCA 439
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCCTAGAAGCGCATCAGATGGAGTTAGATTTCCAGAAGCTCCCCAATGGTTGTGCAATCA 420
Query 440 AGAGGATCCGTCCAGGCAGGACCAACTGTTTAGCTGAAGAGAGCAGCATCACTTGGAGCA 499
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 421 AGAGGATCCGTCCAGGCAGGACCAACTGTTTGGCTGAAGAGAGCAGCATCACTTGGAGCA 480
Query 500 ATGGGAAGATCATGCAAGAGATGATTCTTAGACTAAAGAATGTGGAGTGTGGGGAAGTAG 559
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 481 ATGGGAAGATCAAACAAGAGATGATTCTTAGACTAAAGAATGTTGAGTGTGGGGAAGTAG 540
Query 560 AGCTCATGCTTGAGTGGACTGATGGTCCAGGCTGCAAGGGTCTGGGACGCGAAGGATCCA 619
|| |||||||||||||||| || |||||||||||||||||||| ||||||||||||||||
Sbjct 541 AGATCATGCTTGAGTGGACCGACGGTCCAGGCTGCAAGGGTCTTGGACGCGAAGGATCCA 600
Query 620 AGAAGACACCATGGATGCCGACAAAACGATTGGACTAAGATGCAGAAATGTTAAAACAGA 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AGAAGACACCATGGATGCCGACAAAACGATTGGACTAAGATGCAGAAATGTTAAAACAGA 660
Query 680 GACCGTGAAGATGTGATGGTATTTTTTCGTTATGTTCATGGAAAGA------CGAGTTTG 733
|||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 661 GACCGTGAAGATGTGATGGTATTTTTTCTTTCTGTTCATGGAAAGATAAAGACGAGTTTG 720
Query 734 TCTTTGTCTCATCAGAGTTTAAATTGACAAAAAAGGCTCTGCTTTGGTCTTTAGTTGTAC 793
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 721 TCTTTGTCTCATCAGAGTTTAAATTGATAAAAA-GGCTCTGCTTTGGTCTTTAGTTGTAC 779
Query 794 ATGTCGAATAACTCAACCCTTATATATATTGTATCTGTTTCTACTAATTGAAGAAATAAA 853
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 780 ATGTCGAATAACTCAACCCTTATATATATTGTATCTGTTTCTACTAACTGAAGAAATAAA 839
Query 854 GCAAACCCTGAATTTCTAG 872
|||||||||||||||||||
Sbjct 840 GCAAACCCTGAATTTCTAG 858
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32290110699
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5