BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70800.1
Length=717
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316069 jgi|Araly1|316069|fgenesh1_pm.C_scaffold_2001102 760 0.0
Ahg316070 jgi|Araly1|316070|fgenesh1_pm.C_scaffold_2001103 549 1e-155
> Ahg316069 jgi|Araly1|316069|fgenesh1_pm.C_scaffold_2001102
Length=525
Score = 760 bits (411), Expect = 0.0
Identities = 490/528 (93%), Gaps = 6/528 (1%)
Strand=Plus/Plus
Query 53 ATGGAGAAAACAGAGGAAGAGGTTGAGATGAAGGAACTGGTAGGGCTTGTGAGAATCCTA 112
||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||| |
Sbjct 1 ATGGAGAAACCAGAGGAAGAAGTTGAGATTAAGGAACTGGTAGGGCTTGTGAGAATCCAA 60
Query 113 GTGAAGAGAGGGATCGATCTTGCTCGTCGAGACGCTCTAAGCAGCGACCCTTTTGTCGTC 172
||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||
Sbjct 61 GTGAAGAGAGGGATCAATCTTGCTCGTCGAGACGCTTTTAGCAGCGACCCTTTTGTCGTC 120
Query 173 ATAACCATGGG-TCCACAGAAGCTGAAATCTTTTACTGTGAAGAATAACTGCAACCCAGA 231
||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 121 ATAACCATGGGAT-CACAGAAGCTGAAATCTTTTACTGTGAAAAATAACTGCAACCCAGA 179
Query 232 GTGGAACGAAGAGTTGACTCTTGCGATCGAAGATCCCAATGAACCTGTGAAGCTGATGGT 291
|||||||||||||||||| |||||||| ||| ||||||||||||||||||| ||||||||
Sbjct 180 GTGGAACGAAGAGTTGACCCTTGCGATTGAAAATCCCAATGAACCTGTGAATCTGATGGT 239
Query 292 GTATGATAAAGATACATTTACAGCGGACGACAAGATGGGAGATGCGCAGATAGATATGAA 351
|||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||
Sbjct 240 GTATGATAAAGATACATTTACATCAGACGACAAGATGGGAGATGCGGAGATAGATATGAA 299
Query 352 ACCGTTCCTAGACG-TTCACAAACTCGGTTTGAAAGAACTTCCACATGGAAAAGAGCTCA 410
|||||||||||| | |||||||| | |||||| || |||||||| | |||| |||| |||
Sbjct 300 ACCGTTCCTAGA-GATTCACAAAATGGGTTTGCAACAACTTCCAGACGGAACAGAGATCA 358
Query 411 AGAGAATTGTGCCCACCAGAGATAACTGCTTGTCTGAAGATAGCATAATCGTCTCCGATA 470
|||||||||| || |||||||| ||||||||| |||||||||||| |||||||| ||||
Sbjct 359 AGAGAATTGTACCAACCAGAGACAACTGCTTGGCTGAAGATAGCAGAATCGTCTATGATA 418
Query 471 ATGGCAAGATCGTTCAGGACATGATTCTTCTGTTGAAGAATGTCGAATGCGGCAAGGTCG 530
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 419 ACGGCAAGATCGTTCAGGACATGATTCTTCTGTTGAAGAATGTCGAATGCGGCAAGATCG 478
Query 531 AGATCCAGCTTGAATGGCTTAAAAA-TCCAGGTGGTAGTGGACTCTGA 577
||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 479 AGATCCAGCTTGAATGG-TTAAAAAATCCAGGTGGTAGTGGACTCTGA 525
> Ahg316070 jgi|Araly1|316070|fgenesh1_pm.C_scaffold_2001103
Length=498
Score = 549 bits (297), Expect = 1e-155
Identities = 429/491 (87%), Gaps = 16/491 (3%)
Strand=Plus/Plus
Query 80 ATGAAGGAACTGGTAGGGCTTGTGAGAATCCTAGTGAAGAGAGGGATCGATCTTGCTC-G 138
||| ||||||| ||||||||| ||||||||| |||||||||||||||| ||||||||| |
Sbjct 1 ATGGAGGAACTTGTAGGGCTTCTGAGAATCCGAGTGAAGAGAGGGATCAATCTTGCTCAG 60
Query 139 TCGAGACGCTCTAAGCAGCGACCCTTTTGTCGTCATAACCATGGG-TCCACAGAAGCTGA 197
|||||| ||||||||||||||||||||||||||||||||||||| | |||| |||||||
Sbjct 61 -CGAGACACTCTAAGCAGCGACCCTTTTGTCGTCATAACCATGGGAT-CACATAAGCTGA 118
Query 198 A-ATCTTTTACTGT-GAAGAATAACTGCAACCCAGAGTGGAACGAAGAGTTGACTCTTGC 255
| | | |||||| ||| |||||||||||||| ||||||||||| || || || |||||
Sbjct 119 AGA-CGCGTACTGTGGAA-AATAACTGCAACCCTGAGTGGAACGAGGAATTAACCCTTGC 176
Query 256 GATCGAAGATCCCAATGAACCTGTGAAGCTGATGGTGTATGATAAAGATACATTTACAGC 315
| | || ||||| ||||||||||||| ||||| |||||||||||||||||||| ||| |
Sbjct 177 GGTAAAACATCCCGATGAACCTGTGAATCTGATAGTGTATGATAAAGATACATTCACATC 236
Query 316 GGACGACAAGATGGGAGATGCGCAGATAGATATGAAACCGTTCCTAGACGTTCACAAACT 375
| ||||||||||||||||||| |||||||||| ||||| |||||||| ||||||||| |
Sbjct 237 GCACGACAAGATGGGAGATGCAAAGATAGATATCAAACCATTCCTAGAGGTTCACAAAAT 296
Query 376 CGG-TTTGAAAGAACTTCCACATGGAAAAGAGCTCAAGAGAATTGTGCCCACCAGAGAT- 433
|| |||| ||||||||||| |||||| |||| |||||||| ||||||||||||||| |
Sbjct 297 -GGATTTGCAAGAACTTCCAGATGGAACAGAGATCAAGAGAGTTGTGCCCACCAGAG-TC 354
Query 434 AACTGCTTGTCTGAAG-ATAGCA-TAATCGTCTCCGATAATGGCAAGATCGTTCAGGACA 491
|| || || ||||||| | |||| | ||||||||| |||||||||| |||||||||||||
Sbjct 355 AATTGTTTATCTGAAGCA-AGCAGT-ATCGTCTCCAATAATGGCAAAATCGTTCAGGACA 412
Query 492 TGATTCTTCTGTTGAAGAATGTCGAATGCGGCAAGGTCGAGATCCAGCTTGAATGGCTTA 551
|||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||
Sbjct 413 TGATTCTTCTGTTGAAGAATGTCGAATGCGGCGAGGTCGAGATTCAGCTTGAATGGATTG 472
Query 552 AAAATCCAGGT 562
||| |||||||
Sbjct 473 AAATTCCAGGT 483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26381058564
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5