BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70810.1
Length=720
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316070 jgi|Araly1|316070|fgenesh1_pm.C_scaffold_2001103 798 0.0
Ahg316069 jgi|Araly1|316069|fgenesh1_pm.C_scaffold_2001102 558 2e-158
> Ahg316070 jgi|Araly1|316070|fgenesh1_pm.C_scaffold_2001103
Length=498
Score = 798 bits (432), Expect = 0.0
Identities = 476/498 (96%), Gaps = 0/498 (0%)
Strand=Plus/Plus
Query 78 ATGGAGGAACTTGTAGGGCTTCTGAGAATCCGAGTGAAGAGAGGGATCAATCTTGCTCAG 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGGAACTTGTAGGGCTTCTGAGAATCCGAGTGAAGAGAGGGATCAATCTTGCTCAG 60
Query 138 CGAGACACTCTAAGCAGCGACCCTTTTGTTGTCATAACCATGGGATCACAGAAGCTGAAG 197
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 61 CGAGACACTCTAAGCAGCGACCCTTTTGTCGTCATAACCATGGGATCACATAAGCTGAAG 120
Query 198 ACTCGTGTTGTGGAAAATAACTGCAACCCTGAGTGGAACGAGGAATTAACCCTTGCGTTA 257
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 ACGCGTACTGTGGAAAATAACTGCAACCCTGAGTGGAACGAGGAATTAACCCTTGCGGTA 180
Query 258 AGACATCCCGATGAACCTGTGAATCTGATAGTGTATGATAAAGATACATTCACATCGCAC 317
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAACATCCCGATGAACCTGTGAATCTGATAGTGTATGATAAAGATACATTCACATCGCAC 240
Query 318 GACAAGATGGGAGATGCAAAGATAGATATTAAACCATTTCTGGAGGTTCACAAAATGGGT 377
||||||||||||||||||||||||||||| |||||||| || |||||||||||||||| |
Sbjct 241 GACAAGATGGGAGATGCAAAGATAGATATCAAACCATTCCTAGAGGTTCACAAAATGGAT 300
Query 378 TTGCAAGAACTTCCAGATGGAACAGAGATCAAGAGAGTTGTGCCCAACAGAGAAAACTGT 437
|||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 301 TTGCAAGAACTTCCAGATGGAACAGAGATCAAGAGAGTTGTGCCCACCAGAGTCAATTGT 360
Query 438 TTGGCTGAAGCGAGCAGTATCGTCTCCAATAATGGCAAAATCGTTCAGAACATGATTCTT 497
|| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 361 TTATCTGAAGCAAGCAGTATCGTCTCCAATAATGGCAAAATCGTTCAGGACATGATTCTT 420
Query 498 CTGTTGAGGAATGTCGAATGCGGTGAGGTCGAGATTCAGCTTGAATGGATTGATATTCCA 557
||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 421 CTGTTGAAGAATGTCGAATGCGGCGAGGTCGAGATTCAGCTTGAATGGATTGAAATTCCA 480
Query 558 GGTTCTAGAGGGCTTTGA 575
||||||||||||||||||
Sbjct 481 GGTTCTAGAGGGCTTTGA 498
> Ahg316069 jgi|Araly1|316069|fgenesh1_pm.C_scaffold_2001102
Length=525
Score = 558 bits (302), Expect = 2e-158
Identities = 436/499 (87%), Gaps = 15/499 (3%)
Strand=Plus/Plus
Query 55 GAGAAAACAGAGGAAG-AGGTGAGATGGAGGAACTTGTAGGGCTTCTGAGAATCCGAGTG 113
|||||| ||||||||| || |||||| ||||||| ||||||||| ||||||||| ||||
Sbjct 4 GAGAAACCAGAGGAAGAAGTTGAGATTAAGGAACTGGTAGGGCTTGTGAGAATCCAAGTG 63
Query 114 AAGAGAGGGATCAATCTTGCTCAG-CGAGACACTCTAAGCAGCGACCCTTTTGTTGTCAT 172
|||||||||||||||||||||| | |||||| || | ||||||||||||||||| |||||
Sbjct 64 AAGAGAGGGATCAATCTTGCTC-GTCGAGACGCTTTTAGCAGCGACCCTTTTGTCGTCAT 122
Query 173 AACCATGGGATCACAGAAGCTGAAGACTCGTGT--TGTGGAAAATAACTGCAACCCTGAG 230
|||||||||||||||||||||||| | || | | |||| |||||||||||||||| |||
Sbjct 123 AACCATGGGATCACAGAAGCTGAA-A-TCTTTTACTGTGAAAAATAACTGCAACCCAGAG 180
Query 231 TGGAACGAGGAATTAACCCTTGCG-TT-AAGACATCCCGATGAACCTGTGAATCTGATAG 288
|||||||| || || ||||||||| || || | ||||| ||||||||||||||||||| |
Sbjct 181 TGGAACGAAGAGTTGACCCTTGCGATTGAA-A-ATCCCAATGAACCTGTGAATCTGATGG 238
Query 289 TGTATGATAAAGATACATTCACATC-GCACGACAAGATGGGAGATGCAAAGATAGATATT 347
||||||||||||||||||| ||||| | ||||||||||||||||||| ||||||||||
Sbjct 239 TGTATGATAAAGATACATTTACATCAG-ACGACAAGATGGGAGATGCGGAGATAGATATG 297
Query 348 AAACCATTTCTGGAGGTTCACAAAATGGGTTTGCAAGAACTTCCAGATGGAACAGAGATC 407
||||| || || ||| |||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 298 AAACCGTTCCTAGAGATTCACAAAATGGGTTTGCAACAACTTCCAGACGGAACAGAGATC 357
Query 408 AAGAGAGTTGTGCCCAAC-AGAGAAAACTGTTTGGCTGAAGCGAGCAGTATCGTCTCCAA 466
|||||| |||| || ||| ||||| ||||| |||||||||| ||||| ||||||| |
Sbjct 358 AAGAGAATTGTACC-AACCAGAGACAACTGCTTGGCTGAAGATAGCAGAATCGTCTATGA 416
Query 467 TAATGGCAAAATCGTTCAGAACATGATTCTTCTGTTGAGGAATGTCGAATGCGGTGAGGT 526
||| ||||| ||||||||| |||||||||||||||||| ||||||||||||||| || |
Sbjct 417 TAACGGCAAGATCGTTCAGGACATGATTCTTCTGTTGAAGAATGTCGAATGCGGCAAGAT 476
Query 527 CGAGATTCAGCTTGAATGG 545
|||||| ||||||||||||
Sbjct 477 CGAGATCCAGCTTGAATGG 495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26495427315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5