BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G70870.1

Length=420
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg316075 jgi|Araly1|316075|fgenesh1_pm.C_scaffold_2001108           516    6e-146


> Ahg316075 jgi|Araly1|316075|fgenesh1_pm.C_scaffold_2001108
Length=450

 Score =  516 bits (279),  Expect = 6e-146
 Identities = 307/321 (96%), Gaps = 0/321 (0%)
 Strand=Plus/Plus

Query  100  GAGCATATTGGTGATGGCTGTAAAGGCACCAAGAACTGGACTTTGTCTGTTGATGGAAAA  159
            |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct  130  GAGCATATTGGTGATGACTCTAAAGGCACCAAGAACTGGACTTTGTCTGTTGATGGAAAA  189

Query  160  GTAGAGAAAATGAAGGAGAGAGTTGAAATAGACGAGGCAAACAAATCAATGACTGTGTTT  219
            || |||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||
Sbjct  190  GTGGAGAAAATGAAGGAGAGAGTGGTAATAGACGAGGCAAACAAATCGATGACTGTGTTT  249

Query  220  GTGTTCGAAGGAGATGTGATGGAGAATTATAGTAGTTTCACATGCAATCTTCAGATCATA  279
            |||||||||||||||||||||||||| |||||||| |||| ||| |||||||||||||||
Sbjct  250  GTGTTCGAAGGAGATGTGATGGAGAACTATAGTAGCTTCAAATGTAATCTTCAGATCATA  309

Query  280  CCAAAGCTTCATGGTAGAAGTATAGCAAGATGGAGCTGGGAATACGAGAAGCTTAATGCA  339
            |||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||
Sbjct  310  CCAAAGCTTCATGGAAGAAGTATAGCAAGATGGAGCTGGGAATACGAAAAACTTAATGCA  369

Query  340  GATTCTCCAGCTCCGAACAAATACATGGATTTTGCAGTCTATCTCACTAAAGACATTGAA  399
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  370  GATTCTCCAGCTCCGAACAAATACATGGATTTTGCAGTCTATCTCACTAAAGATATTGAA  429

Query  400  TCTAATCTTCTCAAAACATAG  420
            |||||||||||||||||||||
Sbjct  430  TCTAATCTTCTCAAAACATAG  450


 Score =  100 bits (54),  Expect = 7e-21
 Identities = 60/63 (95%), Gaps = 0/63 (0%)
 Strand=Plus/Plus

Query  1   ATGGCTCAGATGGCGAAATCCATGATAGAAGTGGAGATCAATGTATCAGCTGATATGATT  60
           |||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||
Sbjct  1   ATGGCTCAGATGGCGAAATCCATGATAGAAGTCGAGATCAATGTATCAGCCGATAAGATT  60

Query  61  TTC  63
           |||
Sbjct  61  TTC  63



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15109613244


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5