BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70880.1
Length=746
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476223 jgi|Araly1|476223|fgenesh2_kg.2__1353__AT1G70880.1 811 0.0
> Ahg476223 jgi|Araly1|476223|fgenesh2_kg.2__1353__AT1G70880.1
Length=544
Score = 811 bits (439), Expect = 0.0
Identities = 511/545 (94%), Gaps = 7/545 (1%)
Strand=Plus/Plus
Query 5 CCATTTACTCTCAAAAACTC-AAACACTTAGAGAC---AA-TACAAATCATCGGTAAAAA 59
||||| |||||||||||||| |||||||||||||| || ||||||||| ||||| |||
Sbjct 1 CCATTCACTCTCAAAAACTCGAAACACTTAGAGACATTAATTACAAATCAGCGGTACAAA 60
Query 60 GAATGGCGGAAGAGGCATCTAGTTTGGTTGGGATCGTTGAGACAACTGTAGAGCTAAAAT 119
|||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||
Sbjct 61 GAATGGCGGAAGAGGCATCTAGTTTGGTCGGGATCATTGAAACAACTGTAGAGCTAAAAT 120
Query 120 CTTCGGTGGAGAAGTTCCATGACCTGCTTGTCGGGAGACCACACCATATGTCCAATGCAA 179
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 121 CTTCGGTGGAGAAGTTCCATGACCTGCTTGTCGGGAGACCGCACCATATGTCCAATGCAA 180
Query 180 CTCCATCCAACATTCAGAGCGCTGAGCTTCAAGAAGGCGAGATGGGCCAAGTTGGCGCCG 239
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 181 CTCCATCCAACATTCAGAGCGCTGAGCTGCAAGAAGGCGAAATGGGCCAAGTTGGCGCCG 240
Query 240 TCATCCTCTGGAATTACGTTCATGATGGGGAGGCAAA-GTCGGCGAAACAAAGGATCGAG 298
|||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||
Sbjct 241 TCATCCTCTGGAATTACGTTCATGATGGCGAGGCAAAGGT-GGCGAAACAAAGGATCGAG 299
Query 299 TCATTGGATCCGGAGAAAAATCGGATCACGTACAGGGTGGTAGAGGGTGATTTATTGAAA 358
||| |||||||||| | |||||| ||||||| | |||||||||||||||||||||||||
Sbjct 300 TCACTGGATCCGGATCACAATCGGGTCACGTATAAGGTGGTAGAGGGTGATTTATTGAAA 359
Query 359 GAGTACACGAGTTTCGTGACGACCTTCCAAGTGACACCTAAGGAAGGAGAACCTGGAAGT 418
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 360 GAGTACACGAGTTTCGTGACGACCTTCCAAGTGACCCCTAAAGAAGGAGAACCTGGAAGT 419
Query 419 GTTGCACATTGGCACTTTGAGTATGAGAAAATTAACGAGGAGGTGGCTCACCCTGAAACT 478
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 420 GTTGCACATTGGCACTTTGAGTATGAGAAAATCAACGAAGAGGTGGCTCACCCTGAAACT 479
Query 479 CTCCTCCAGTTGGCAACCGAAGTCTCTAAAGATATGGATGAACATCTCTTATCCGAGGAA 538
||||||||||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 480 CTCCTCCAGTTAGCTGTTGAAGTCTCTAAAGAGATGGATGAACATCTCTTATCCGAGGAA 539
Query 539 TAGAG 543
|||||
Sbjct 540 TAGAG 544
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27486623157
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5